RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CALM3P0DP25 149 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 CFAP58Q5T655 872 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 ANKRD24Q8TF21 1146 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 UBA7P41226 1012 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 ATP2B3Q16720 1220 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 TDRD12Q587J7 1177 aaKnown RBP7.01□□□□□ -1.29
SCN1A-217ENST00000637988 CERS3Q8IU89 383 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 PRPHP41219 470 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 ZNF569Q5MCW4 686 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 FLAD1Q8NFF5 587 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 GTF3C6Q969F1 213 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 CNNM2Q9H8M5 875 aa7.01□□□□□ -1.29
SCN1A-217ENST00000637988 TROQ12816 1431 aaPredicted RBP7.01□□□□□ -1.29
SCN1A-217ENST00000637988 CNBD1Q8NA66 436 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 SLC12A5Q9H2X9 1139 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7□□□□□ -1.29
SCN1A-217ENST00000637988 CLIP2Q9UDT6 1046 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 ZRANB1Q9UGI0 708 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 IL2RBP14784 551 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 CALML3P27482 149 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 MTIF2P46199 727 aaKnown RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 SLC4A8Q2Y0W8 1093 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 ZBTB3Q9H5J0 574 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 WWC3Q9ULE0 1092 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 PALM3A6NDB9 673 aaPredicted RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 ALDH1B1P30837 517 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 GABPAQ06546 454 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 ZNF772Q68DY9 489 aaPredicted RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 PUS7Q96PZ0 661 aaKnown RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 NUP88Q99567 741 aaPredicted RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 DKC1O60832 514 aaKnown RBP eCLIP7□□□□□ -1.296e-8■■■■■ 53.6
SCN1A-217ENST00000637988 FAM193AP78312 1265 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 CCDC83Q8IWF9 413 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 DCPSQ96C86 337 aaKnown RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 TXNDC16Q9P2K2 825 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 NOL12Q9UGY1 213 aaKnown RBP eCLIP7□□□□□ -1.29
SCN1A-217ENST00000637988 V9GYY5 206 aaPredicted RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 IRX3P78415 501 aaPredicted RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 CFAP100Q494V2 611 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 NSMCE1Q8WV22 266 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 RNF34Q969K3 372 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 RTEL1Q9NZ71 1219 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 TNNT1P13805 278 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 CUL4BQ13620 913 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 NAA16Q6N069 864 aaPredicted RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 LARGE2Q8N3Y3 721 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 RRP36Q96EU6 259 aaKnown RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 GTPBP4Q9BZE4 634 aaKnown RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 IQCGQ9H095 443 aaKnown RBP7□□□□□ -1.29
SCN1A-217ENST00000637988 GNPATO15228 680 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 FAM13AO94988 1023 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 USHBP1Q8N6Y0 703 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 RMND1Q9NWS8 449 aa7□□□□□ -1.29
SCN1A-217ENST00000637988 FMNL3Q8IVF7 1028 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 EXOC6Q8TAG9 804 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 UHRF1BP1Q6BDS2 1440 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 PAFAH1B1P43034 410 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 KLHL10Q6JEL2 608 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 FAM177A1Q8N128 213 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-217ENST00000637988 CCDC89Q8N998 374 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 BOLA2Q9H3K6 86 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 TOPBP1Q92547 1522 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 NSD3Q9BZ95 1437 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 NCAPD3P42695 1498 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 KIF5CO60282 957 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 GMNNO75496 209 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 DNM2P50570 870 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 TNFAIP1Q13829 316 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 ESR2Q92731 530 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 YEATS4O95619 227 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 APBA3O96018 575 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 CCT6BQ92526 530 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 TIGD1Q96MW7 591 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 LDHBP07195 334 aaKnown RBP6.99□□□□□ -1.29
SCN1A-217ENST00000637988 GNAT2P19087 354 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 UTP14CQ5TAP6 766 aaKnown RBP6.99□□□□□ -1.29
SCN1A-217ENST00000637988 C6orf163Q5TEZ5 329 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 SMC1BQ8NDV3 1235 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 KIAA1107Q9UPP5 1409 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 ZEB2O60315 1214 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 SMTNP53814 917 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 ARHGAP27Q6ZUM4 889 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 MTERF4Q7Z6M4 381 aaKnown RBP6.99□□□□□ -1.29
SCN1A-217ENST00000637988 CCDC125Q86Z20 511 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 GBP3Q9H0R5 595 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 WASLO00401 505 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-217ENST00000637988 RIMBP2O15034 1052 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 PPP2R1AP30153 589 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-217ENST00000637988 DNAAF4Q8WXU2 420 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 MAP3K2Q9Y2U5 619 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 RAD50Q92878 1312 aa6.99□□□□□ -1.29
SCN1A-217ENST00000637988 STK25O00506 426 aa6.98□□□□□ -1.29
SCN1A-217ENST00000637988 BMP15O95972 392 aa6.98□□□□□ -1.29
SCN1A-217ENST00000637988 KIF5AQ12840 1032 aa6.98□□□□□ -1.29
SCN1A-217ENST00000637988 MAP7D1Q3KQU3 841 aa6.98□□□□□ -1.29
SCN1A-217ENST00000637988 MMRN2Q9H8L6 949 aa6.98□□□□□ -1.29
SCN1A-217ENST00000637988 NSFL1CQ9UNZ2 370 aaKnown RBP6.98□□□□□ -1.29
SCN1A-217ENST00000637988 CDC37L1Q7L3B6 337 aa6.98□□□□□ -1.29
SCN1A-217ENST00000637988 HEATR3Q7Z4Q2 680 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms