RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CSRNP1Q96S65 589 aa21.79■■□□□ 1.08
CLN3-264ENST00000637985 RSPH6AQ9H0K4 717 aa21.79■■□□□ 1.08
CLN3-264ENST00000637985 POLR2AP24928 1970 aaKnown RBP21.78■■□□□ 1.08
CLN3-264ENST00000637985 DPP8Q6V1X1 898 aaPredicted RBP21.78■■□□□ 1.08
CLN3-264ENST00000637985 TTLL7Q6ZT98 887 aa21.78■■□□□ 1.08
CLN3-264ENST00000637985 MICALL2Q8IY33 904 aa21.78■■□□□ 1.08
CLN3-264ENST00000637985 RTF1Q92541 710 aaKnown RBP21.78■■□□□ 1.08
CLN3-264ENST00000637985 NLRP3Q96P20 1036 aa21.78■■□□□ 1.08
CLN3-264ENST00000637985 LAMB4A4D0S4 1761 aa21.78■■□□□ 1.08
CLN3-264ENST00000637985 YDJCA8MPS7 323 aa21.77■■□□□ 1.08
CLN3-264ENST00000637985 KIF6Q6ZMV9 814 aa21.77■■□□□ 1.08
CLN3-264ENST00000637985 KRT26Q7Z3Y9 468 aa21.77■■□□□ 1.08
CLN3-264ENST00000637985 SP8Q8IXZ3 490 aa21.77■■□□□ 1.08
CLN3-264ENST00000637985 GCC1Q96CN9 775 aa21.77■■□□□ 1.08
CLN3-264ENST00000637985 ABCC4O15439 1325 aa21.77■■□□□ 1.07
CLN3-264ENST00000637985 SLC10A3P09131 477 aa21.76■■□□□ 1.07
CLN3-264ENST00000637985 SLC10A5Q5PT55 438 aa21.76■■□□□ 1.07
CLN3-264ENST00000637985 SAMD7Q7Z3H4 446 aa21.76■■□□□ 1.07
CLN3-264ENST00000637985 MPNDQ8N594 471 aa21.76■■□□□ 1.07
CLN3-264ENST00000637985 DPF2Q92785 391 aa21.76■■□□□ 1.07
CLN3-264ENST00000637985 BBOX1O75936 387 aa21.75■■□□□ 1.07
CLN3-264ENST00000637985 PKN2Q16513 984 aaKnown RBP21.75■■□□□ 1.07
CLN3-264ENST00000637985 ZBTB3Q9H5J0 574 aa21.75■■□□□ 1.07
CLN3-264ENST00000637985 DCTN1Q14203 1278 aa21.74■■□□□ 1.07
CLN3-264ENST00000637985 TAF7Q15545 349 aaPredicted RBP21.74■■□□□ 1.07
CLN3-264ENST00000637985 PPP1R42Q7Z4L9 355 aa21.74■■□□□ 1.07
CLN3-264ENST00000637985 REM2Q8IYK8 340 aaPredicted RBP21.74■■□□□ 1.07
CLN3-264ENST00000637985 ZBTB12Q9Y330 459 aaPredicted RBP21.74■■□□□ 1.07
CLN3-264ENST00000637985 ADM5C9JUS6 153 aa21.73■■□□□ 1.07
CLN3-264ENST00000637985 EGFRP00533 1210 aa21.73■■□□□ 1.07
CLN3-264ENST00000637985 RRP7AQ9Y3A4 280 aaKnown RBP21.73■■□□□ 1.07
CLN3-264ENST00000637985 HTATSF1O43719 755 aaKnown RBP21.72■■□□□ 1.07
CLN3-264ENST00000637985 GIGYF2Q6Y7W6 1299 aaKnown RBP21.72■■□□□ 1.07
CLN3-264ENST00000637985 MIS18AQ9NYP9 233 aa21.72■■□□□ 1.07
CLN3-264ENST00000637985 TBC1D10BQ4KMP7 808 aaPredicted RBP21.71■■□□□ 1.07
CLN3-264ENST00000637985 PARP10Q53GL7 1025 aa21.71■■□□□ 1.07
CLN3-264ENST00000637985 DCPSQ96C86 337 aaKnown RBP21.71■■□□□ 1.07
CLN3-264ENST00000637985 MYL6BP14649 208 aa21.7■■□□□ 1.06
CLN3-264ENST00000637985 HABP4Q5JVS0 413 aaKnown RBP21.7■■□□□ 1.06
CLN3-264ENST00000637985 PSMD14O00487 310 aa21.69■■□□□ 1.06
CLN3-264ENST00000637985 UTP14AQ9BVJ6 771 aaKnown RBP21.69■■□□□ 1.06
CLN3-264ENST00000637985 DUOX1Q9NRD9 1551 aa21.69■■□□□ 1.06
CLN3-264ENST00000637985 MKI67P46013 3256 aaKnown RBP21.67■■□□□ 1.06
CLN3-264ENST00000637985 ANKRD36CQ5JPF3 1778 aa21.67■■□□□ 1.06
CLN3-264ENST00000637985 RASAL3Q86YV0 1011 aa21.67■■□□□ 1.06
CLN3-264ENST00000637985 HDAC9Q9UKV0 1011 aa21.67■■□□□ 1.06
CLN3-264ENST00000637985 LAMB2P55268 1798 aa21.66■■□□□ 1.06
CLN3-264ENST00000637985 RPS12P25398 132 aaKnown RBP21.66■■□□□ 1.06
CLN3-264ENST00000637985 RBM26Q5T8P6 1007 aaKnown RBP21.66■■□□□ 1.06
CLN3-264ENST00000637985 ZNF296Q8WUU4 475 aaPredicted RBP21.66■■□□□ 1.06
CLN3-264ENST00000637985 EIF4A1P60842 406 aaKnown RBP21.65■■□□□ 1.06
CLN3-264ENST00000637985 GRAPQ13588 217 aa21.65■■□□□ 1.06
CLN3-264ENST00000637985 SULF1Q8IWU6 871 aa21.65■■□□□ 1.06
CLN3-264ENST00000637985 GRAPLQ8TC17 118 aaPredicted RBP21.65■■□□□ 1.06
CLN3-264ENST00000637985 DDX46Q7L014 1031 aaKnown RBP21.64■■□□□ 1.05
CLN3-264ENST00000637985 CDCA5Q96FF9 252 aa21.64■■□□□ 1.05
CLN3-264ENST00000637985 KDM3BQ7LBC6 1761 aa21.64■■□□□ 1.05
CLN3-264ENST00000637985 WASHC4Q2M389 1173 aa21.63■■□□□ 1.05
CLN3-264ENST00000637985 FBXO46Q6PJ61 603 aaPredicted RBP21.63■■□□□ 1.05
CLN3-264ENST00000637985 TMC4Q7Z404 712 aa21.63■■□□□ 1.05
CLN3-264ENST00000637985 PNISRQ8TF01 805 aaKnown RBP21.63■■□□□ 1.05
CLN3-264ENST00000637985 CFAP53Q96M91 514 aa21.63■■□□□ 1.05
CLN3-264ENST00000637985 DBNDD1Q9H9R9 158 aa21.63■■□□□ 1.05
CLN3-264ENST00000637985 NUDCQ9Y266 331 aa21.63■■□□□ 1.05
CLN3-264ENST00000637985 TAF1P21675 1872 aa21.62■■□□□ 1.05
CLN3-264ENST00000637985 ERBB4Q15303 1308 aa21.62■■□□□ 1.05
CLN3-264ENST00000637985 TBC1D8O95759 1140 aa21.62■■□□□ 1.05
CLN3-264ENST00000637985 U2AF1L5P0DN76 240 aaPredicted RBP21.62■■□□□ 1.05
CLN3-264ENST00000637985 HCLS1P14317 486 aaPredicted RBP21.62■■□□□ 1.05
CLN3-264ENST00000637985 U2AF1Q01081 240 aaKnown RBP eCLIP21.62■■□□□ 1.05
CLN3-264ENST00000637985 KIF4BQ2VIQ3 1234 aa21.62■■□□□ 1.05
CLN3-264ENST00000637985 NOM1Q5C9Z4 860 aaKnown RBP21.62■■□□□ 1.05
CLN3-264ENST00000637985 LRP10Q7Z4F1 713 aa21.62■■□□□ 1.05
CLN3-264ENST00000637985 KCNQ5Q9NR82 932 aa21.62■■□□□ 1.05
CLN3-264ENST00000637985 GGA3Q9NZ52 723 aa21.62■■□□□ 1.05
CLN3-264ENST00000637985 LRRC37AA6NMS7 1700 aa21.62■■□□□ 1.05
CLN3-264ENST00000637985 RTL9Q8NET4 1388 aa21.61■■□□□ 1.05
CLN3-264ENST00000637985 ASTN2O75129 1339 aaPredicted RBP21.61■■□□□ 1.05
CLN3-264ENST00000637985 FKBP1BP68106 108 aa21.61■■□□□ 1.05
CLN3-264ENST00000637985 CNGB1Q14028 1251 aaPredicted RBP21.61■■□□□ 1.05
CLN3-264ENST00000637985 GPR25O00155 361 aa21.59■■□□□ 1.05
CLN3-264ENST00000637985 PAPPA2Q9BXP8 1791 aa21.59■■□□□ 1.05
CLN3-264ENST00000637985 RIMBP2O15034 1052 aa21.58■■□□□ 1.05
CLN3-264ENST00000637985 NLRP10Q86W26 655 aa21.58■■□□□ 1.05
CLN3-264ENST00000637985 POLLQ9UGP5 575 aa21.58■■□□□ 1.05
CLN3-264ENST00000637985 NSFL1CQ9UNZ2 370 aaKnown RBP21.58■■□□□ 1.05
CLN3-264ENST00000637985 ECE2O60344 883 aa21.57■■□□□ 1.04
CLN3-264ENST00000637985 VIL1P09327 827 aaKnown RBP21.57■■□□□ 1.04
CLN3-264ENST00000637985 TM4SF4P48230 202 aa21.57■■□□□ 1.04
CLN3-264ENST00000637985 FXR1P51114 621 aaKnown RBP eCLIP21.57■■□□□ 1.04
CLN3-264ENST00000637985 PDIA6Q15084 440 aa21.57■■□□□ 1.04
CLN3-264ENST00000637985 THUMPD2Q9BTF0 503 aaKnown RBP21.57■■□□□ 1.04
CLN3-264ENST00000637985 DOK7Q18PE1 504 aa21.56■■□□□ 1.04
CLN3-264ENST00000637985 ANGEL2Q5VTE6 544 aaKnown RBP21.56■■□□□ 1.04
CLN3-264ENST00000637985 HTTP42858 3142 aa21.56■■□□□ 1.04
CLN3-264ENST00000637985 SH3TC1Q8TE82 1336 aa21.55■■□□□ 1.04
CLN3-264ENST00000637985 TRMT112Q9UI30 125 aaKnown RBP21.55■■□□□ 1.04
CLN3-264ENST00000637985 SCN9AQ15858 1988 aa21.55■■□□□ 1.04
CLN3-264ENST00000637985 DDX60Q8IY21 1712 aaKnown RBP21.55■■□□□ 1.04
CLN3-264ENST00000637985 C6orf229H3BNL8 230 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms