RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SLC10A3P09131 477 aa19.5■□□□□ 0.71
CLN3-249ENST00000636685 KIAA2012Q0VF49 1180 aa19.5■□□□□ 0.71
CLN3-249ENST00000636685 HABP4Q5JVS0 413 aaKnown RBP19.5■□□□□ 0.71
CLN3-249ENST00000636685 CC2D1BQ5T0F9 858 aaKnown RBP19.5■□□□□ 0.71
CLN3-249ENST00000636685 DPP8Q6V1X1 898 aaPredicted RBP19.5■□□□□ 0.71
CLN3-249ENST00000636685 ZBTB12Q9Y330 459 aaPredicted RBP19.5■□□□□ 0.71
CLN3-249ENST00000636685 ABCC4O15439 1325 aa19.5■□□□□ 0.71
CLN3-249ENST00000636685 PRKAR2BP31323 418 aa19.49■□□□□ 0.71
CLN3-249ENST00000636685 ZBTB3Q9H5J0 574 aa19.49■□□□□ 0.71
CLN3-249ENST00000636685 EGFRP00533 1210 aa19.48■□□□□ 0.71
CLN3-249ENST00000636685 TBC1D10BQ4KMP7 808 aaPredicted RBP19.48■□□□□ 0.71
CLN3-249ENST00000636685 KIF6Q6ZMV9 814 aa19.48■□□□□ 0.71
CLN3-249ENST00000636685 MPNDQ8N594 471 aa19.48■□□□□ 0.71
CLN3-249ENST00000636685 LAMB2P55268 1798 aa19.47■□□□□ 0.71
CLN3-249ENST00000636685 DCTN1Q14203 1278 aa19.47■□□□□ 0.71
CLN3-249ENST00000636685 ZNF34Q8IZ26 560 aa19.47■□□□□ 0.71
CLN3-249ENST00000636685 NLRP3Q96P20 1036 aa19.47■□□□□ 0.71
CLN3-249ENST00000636685 RRP7AQ9Y3A4 280 aaKnown RBP19.47■□□□□ 0.71
CLN3-249ENST00000636685 TAF1P21675 1872 aa19.47■□□□□ 0.71
CLN3-249ENST00000636685 PKN2Q16513 984 aaKnown RBP19.46■□□□□ 0.71
CLN3-249ENST00000636685 SP8Q8IXZ3 490 aa19.46■□□□□ 0.71
CLN3-249ENST00000636685 RTF1Q92541 710 aaKnown RBP19.46■□□□□ 0.71
CLN3-249ENST00000636685 HDAC9Q9UKV0 1011 aa19.46■□□□□ 0.71
CLN3-249ENST00000636685 TIMELESSQ9UNS1 1208 aa19.46■□□□□ 0.71
CLN3-249ENST00000636685 RBM26Q5T8P6 1007 aaKnown RBP19.45■□□□□ 0.7
CLN3-249ENST00000636685 DPF2Q92785 391 aa19.45■□□□□ 0.7
CLN3-249ENST00000636685 DCPSQ96C86 337 aaKnown RBP19.45■□□□□ 0.7
CLN3-249ENST00000636685 RSPH6AQ9H0K4 717 aa19.45■□□□□ 0.7
CLN3-249ENST00000636685 MIS18AQ9NYP9 233 aa19.45■□□□□ 0.7
CLN3-249ENST00000636685 PSMD14O00487 310 aa19.44■□□□□ 0.7
CLN3-249ENST00000636685 MYL6BP14649 208 aa19.44■□□□□ 0.7
CLN3-249ENST00000636685 RASAL3Q86YV0 1011 aa19.44■□□□□ 0.7
CLN3-249ENST00000636685 ZNF296Q8WUU4 475 aaPredicted RBP19.44■□□□□ 0.7
CLN3-249ENST00000636685 DUOX1Q9NRD9 1551 aa19.44■□□□□ 0.7
CLN3-249ENST00000636685 ANKRD36CQ5JPF3 1778 aa19.43■□□□□ 0.7
CLN3-249ENST00000636685 BBOX1O75936 387 aa19.43■□□□□ 0.7
CLN3-249ENST00000636685 CNGB1Q14028 1251 aaPredicted RBP19.43■□□□□ 0.7
CLN3-249ENST00000636685 PPP1R42Q7Z4L9 355 aa19.43■□□□□ 0.7
CLN3-249ENST00000636685 MKI67P46013 3256 aaKnown RBP19.42■□□□□ 0.7
CLN3-249ENST00000636685 TBC1D8O95759 1140 aa19.42■□□□□ 0.7
CLN3-249ENST00000636685 SLC10A5Q5PT55 438 aa19.42■□□□□ 0.7
CLN3-249ENST00000636685 PER1O15534 1290 aaPredicted RBP19.41■□□□□ 0.7
CLN3-249ENST00000636685 TAF7Q15545 349 aaPredicted RBP19.41■□□□□ 0.7
CLN3-249ENST00000636685 GIGYF2Q6Y7W6 1299 aaKnown RBP19.41■□□□□ 0.7
CLN3-249ENST00000636685 REM2Q8IYK8 340 aaPredicted RBP19.41■□□□□ 0.7
CLN3-249ENST00000636685 ASTN2O75129 1339 aaPredicted RBP19.41■□□□□ 0.7
CLN3-249ENST00000636685 CDCA5Q96FF9 252 aa19.4■□□□□ 0.7
CLN3-249ENST00000636685 DBNDD1Q9H9R9 158 aa19.4■□□□□ 0.7
CLN3-249ENST00000636685 PARP10Q53GL7 1025 aa19.39■□□□□ 0.69
CLN3-249ENST00000636685 FBXO46Q6PJ61 603 aaPredicted RBP19.39■□□□□ 0.69
CLN3-249ENST00000636685 SULF1Q8IWU6 871 aa19.39■□□□□ 0.69
CLN3-249ENST00000636685 UTP14AQ9BVJ6 771 aaKnown RBP19.39■□□□□ 0.69
CLN3-249ENST00000636685 KCNQ5Q9NR82 932 aa19.39■□□□□ 0.69
CLN3-249ENST00000636685 GGA3Q9NZ52 723 aa19.39■□□□□ 0.69
CLN3-249ENST00000636685 KDM3BQ7LBC6 1761 aa19.39■□□□□ 0.69
CLN3-249ENST00000636685 KIF4BQ2VIQ3 1234 aa19.38■□□□□ 0.69
CLN3-249ENST00000636685 LRRC37AA6NMS7 1700 aa19.37■□□□□ 0.69
CLN3-249ENST00000636685 RIMBP2O15034 1052 aa19.37■□□□□ 0.69
CLN3-249ENST00000636685 HCLS1P14317 486 aaPredicted RBP19.37■□□□□ 0.69
CLN3-249ENST00000636685 FXR1P51114 621 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLN3-249ENST00000636685 GRAPQ13588 217 aa19.37■□□□□ 0.69
CLN3-249ENST00000636685 GRAPLQ8TC17 118 aaPredicted RBP19.37■□□□□ 0.69
CLN3-249ENST00000636685 RTL9Q8NET4 1388 aa19.36■□□□□ 0.69
CLN3-249ENST00000636685 SCN9AQ15858 1988 aa19.36■□□□□ 0.69
CLN3-249ENST00000636685 GPR25O00155 361 aa19.36■□□□□ 0.69
CLN3-249ENST00000636685 RPS12P25398 132 aaKnown RBP19.36■□□□□ 0.69
CLN3-249ENST00000636685 WASHC4Q2M389 1173 aa19.36■□□□□ 0.69
CLN3-249ENST00000636685 DDX46Q7L014 1031 aaKnown RBP19.36■□□□□ 0.69
CLN3-249ENST00000636685 PAPPA2Q9BXP8 1791 aa19.36■□□□□ 0.69
CLN3-249ENST00000636685 KIAA0100Q14667 2235 aaKnown RBP19.35■□□□□ 0.69
CLN3-249ENST00000636685 HTATSF1O43719 755 aaKnown RBP19.35■□□□□ 0.69
CLN3-249ENST00000636685 MOB2Q70IA6 237 aa19.35■□□□□ 0.69
CLN3-249ENST00000636685 DDX60Q8IY21 1712 aaKnown RBP19.34■□□□□ 0.69
CLN3-249ENST00000636685 EIF4A1P60842 406 aaKnown RBP19.34■□□□□ 0.69
CLN3-249ENST00000636685 DOK7Q18PE1 504 aa19.34■□□□□ 0.69
CLN3-249ENST00000636685 THUMPD2Q9BTF0 503 aaKnown RBP19.34■□□□□ 0.69
CLN3-249ENST00000636685 DLG5Q8TDM6 1919 aa19.33■□□□□ 0.69
CLN3-249ENST00000636685 POTEFA5A3E0 1075 aa19.33■□□□□ 0.68
CLN3-249ENST00000636685 ECE2O60344 883 aa19.33■□□□□ 0.68
CLN3-249ENST00000636685 U2AF1L5P0DN76 240 aaPredicted RBP19.32■□□□□ 0.68
CLN3-249ENST00000636685 U2AF1Q01081 240 aaKnown RBP eCLIP19.32■□□□□ 0.68
CLN3-249ENST00000636685 ANGEL2Q5VTE6 544 aaKnown RBP19.32■□□□□ 0.68
CLN3-249ENST00000636685 NSFL1CQ9UNZ2 370 aaKnown RBP19.32■□□□□ 0.68
CLN3-249ENST00000636685 UBE2Q2LH0YL09 131 aa19.31■□□□□ 0.68
CLN3-249ENST00000636685 C6orf229H3BNL8 230 aa19.31■□□□□ 0.68
CLN3-249ENST00000636685 FKBP1BP68106 108 aa19.31■□□□□ 0.68
CLN3-249ENST00000636685 SCARF1Q14162 830 aa19.31■□□□□ 0.68
CLN3-249ENST00000636685 NOM1Q5C9Z4 860 aaKnown RBP19.31■□□□□ 0.68
CLN3-249ENST00000636685 R3HDMLQ9H3Y0 253 aa19.31■□□□□ 0.68
CLN3-249ENST00000636685 POLLQ9UGP5 575 aa19.31■□□□□ 0.68
CLN3-249ENST00000636685 HTTP42858 3142 aa19.3■□□□□ 0.68
CLN3-249ENST00000636685 FKTNO75072 461 aa19.3■□□□□ 0.68
CLN3-249ENST00000636685 TM4SF4P48230 202 aa19.3■□□□□ 0.68
CLN3-249ENST00000636685 MKRN3Q13064 507 aaKnown RBP19.3■□□□□ 0.68
CLN3-249ENST00000636685 TMC4Q7Z404 712 aa19.3■□□□□ 0.68
CLN3-249ENST00000636685 CFAP53Q96M91 514 aa19.3■□□□□ 0.68
CLN3-249ENST00000636685 SCAF8Q9UPN6 1271 aaKnown RBP19.3■□□□□ 0.68
CLN3-249ENST00000636685 GPSM2P81274 684 aa19.29■□□□□ 0.68
CLN3-249ENST00000636685 LRP10Q7Z4F1 713 aa19.29■□□□□ 0.68
CLN3-249ENST00000636685 NLRP10Q86W26 655 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms