RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 G2E3Q7L622 706 aa23.1■■□□□ 1.29
CLN3-243ENST00000635973 ZNF428Q96B54 188 aa23.1■■□□□ 1.29
CLN3-243ENST00000635973 YTHDC1Q96MU7 727 aaKnown RBP23.1■■□□□ 1.29
CLN3-243ENST00000635973 TAF1DQ9H5J8 278 aaPredicted RBP23.1■■□□□ 1.29
CLN3-243ENST00000635973 CACNA1FO60840 1977 aa23.09■■□□□ 1.29
CLN3-243ENST00000635973 FKBP5Q13451 457 aaPredicted RBP23.09■■□□□ 1.29
CLN3-243ENST00000635973 DDX46Q7L014 1031 aaKnown RBP23.09■■□□□ 1.29
CLN3-243ENST00000635973 LDHDQ86WU2 507 aa23.09■■□□□ 1.29
CLN3-243ENST00000635973 GPC2Q8N158 579 aa23.09■■□□□ 1.29
CLN3-243ENST00000635973 CLEC11AQ9Y240 323 aa23.09■■□□□ 1.29
CLN3-243ENST00000635973 BBOX1O75936 387 aa23.08■■□□□ 1.29
CLN3-243ENST00000635973 ATP6V0A2Q9Y487 856 aa23.08■■□□□ 1.29
CLN3-243ENST00000635973 GJA3Q9Y6H8 435 aa23.08■■□□□ 1.29
CLN3-243ENST00000635973 ABCC4O15439 1325 aa23.08■■□□□ 1.28
CLN3-243ENST00000635973 POTEIP0CG38 1075 aa23.07■■□□□ 1.28
CLN3-243ENST00000635973 POTEJP0CG39 1038 aa23.07■■□□□ 1.28
CLN3-243ENST00000635973 KSR2Q6VAB6 950 aa23.07■■□□□ 1.28
CLN3-243ENST00000635973 NIM1KQ8IY84 436 aa23.07■■□□□ 1.28
CLN3-243ENST00000635973 SUPT20HQ8NEM7 779 aa23.07■■□□□ 1.28
CLN3-243ENST00000635973 BCL2L13Q9BXK5 485 aa23.07■■□□□ 1.28
CLN3-243ENST00000635973 MAP3K2Q9Y2U5 619 aa23.07■■□□□ 1.28
CLN3-243ENST00000635973 SNED1Q8TER0 1413 aa23.07■■□□□ 1.28
CLN3-243ENST00000635973 PI4KAP2A4QPH2 592 aa23.06■■□□□ 1.28
CLN3-243ENST00000635973 PPIP5K2O43314 1243 aa23.06■■□□□ 1.28
CLN3-243ENST00000635973 LMOD1P29536 600 aaPredicted RBP23.06■■□□□ 1.28
CLN3-243ENST00000635973 EPHX2P34913 555 aa23.06■■□□□ 1.28
CLN3-243ENST00000635973 PNMA8AQ86V59 439 aaPredicted RBP23.06■■□□□ 1.28
CLN3-243ENST00000635973 PI4KAP1Q8N8J0 262 aa23.06■■□□□ 1.28
CLN3-243ENST00000635973 SSH1Q8WYL5 1049 aa23.06■■□□□ 1.28
CLN3-243ENST00000635973 MYD88Q99836 296 aa23.06■■□□□ 1.28
CLN3-243ENST00000635973 SMC4Q9NTJ3 1288 aa23.06■■□□□ 1.28
CLN3-243ENST00000635973 ATP5J2-PTCD1G3V325 749 aa23.05■■□□□ 1.28
CLN3-243ENST00000635973 ALDH1L2Q3SY69 923 aa23.05■■□□□ 1.28
CLN3-243ENST00000635973 COL13A1Q5TAT6 717 aaPredicted RBP23.05■■□□□ 1.28
CLN3-243ENST00000635973 NEXNQ0ZGT2 675 aa23.04■■□□□ 1.28
CLN3-243ENST00000635973 DPP8Q6V1X1 898 aaPredicted RBP23.04■■□□□ 1.28
CLN3-243ENST00000635973 SP8Q8IXZ3 490 aa23.04■■□□□ 1.28
CLN3-243ENST00000635973 MRPL50Q8N5N7 158 aaKnown RBP23.04■■□□□ 1.28
CLN3-243ENST00000635973 VPS33BQ9H267 617 aa23.04■■□□□ 1.28
CLN3-243ENST00000635973 GRAPQ13588 217 aa23.03■■□□□ 1.28
CLN3-243ENST00000635973 MPNDQ8N594 471 aa23.03■■□□□ 1.28
CLN3-243ENST00000635973 GRAPLQ8TC17 118 aaPredicted RBP23.03■■□□□ 1.28
CLN3-243ENST00000635973 ISCA1Q9BUE6 129 aa23.03■■□□□ 1.28
CLN3-243ENST00000635973 METTL22Q9BUU2 404 aaPredicted RBP23.03■■□□□ 1.28
CLN3-243ENST00000635973 TAF1P21675 1872 aa23.02■■□□□ 1.28
CLN3-243ENST00000635973 DDX60Q8IY21 1712 aaKnown RBP23.02■■□□□ 1.28
CLN3-243ENST00000635973 AOC3Q16853 763 aa23.02■■□□□ 1.28
CLN3-243ENST00000635973 FAM89AQ96GI7 184 aa23.02■■□□□ 1.28
CLN3-243ENST00000635973 CREBZFQ9NS37 354 aa23.02■■□□□ 1.28
CLN3-243ENST00000635973 RTL5Q5HYW3 569 aaPredicted RBP23.01■■□□□ 1.27
CLN3-243ENST00000635973 TMC4Q7Z404 712 aa23.01■■□□□ 1.27
CLN3-243ENST00000635973 DNAAF4Q8WXU2 420 aa23.01■■□□□ 1.27
CLN3-243ENST00000635973 SLC51AQ86UW1 340 aa23■■□□□ 1.27
CLN3-243ENST00000635973 PCNTO95613 3336 aa23■■□□□ 1.27
CLN3-243ENST00000635973 COL4A5P29400 1685 aa23■■□□□ 1.27
CLN3-243ENST00000635973 HSP90B1P14625 803 aaKnown RBP22.99■■□□□ 1.27
CLN3-243ENST00000635973 RARSP54136 660 aaKnown RBP22.99■■□□□ 1.27
CLN3-243ENST00000635973 PTPRCP08575 1304 aa22.99■■□□□ 1.27
CLN3-243ENST00000635973 F6X3S4 739 aa22.98■■□□□ 1.27
CLN3-243ENST00000635973 HSPA1AP0DMV8 641 aaKnown RBP22.98■■□□□ 1.27
CLN3-243ENST00000635973 HSPA1BP0DMV9 641 aaKnown RBP22.98■■□□□ 1.27
CLN3-243ENST00000635973 TRIM28Q13263 835 aaKnown RBP22.98■■□□□ 1.27
CLN3-243ENST00000635973 RTFDC1Q9BY42 306 aaPredicted RBP22.98■■□□□ 1.27
CLN3-243ENST00000635973 CWC25Q9NXE8 425 aaPredicted RBP22.98■■□□□ 1.27
CLN3-243ENST00000635973 ZNRF3Q9ULT6 936 aa22.98■■□□□ 1.27
CLN3-243ENST00000635973 IRS4O14654 1257 aaPredicted RBP22.97■■□□□ 1.27
CLN3-243ENST00000635973 CCDC191Q8NCU4 936 aa22.97■■□□□ 1.27
CLN3-243ENST00000635973 SF3B3Q15393 1217 aaKnown RBP22.96■■□□□ 1.27
CLN3-243ENST00000635973 MAP1SQ66K74 1059 aaPredicted RBP22.96■■□□□ 1.27
CLN3-243ENST00000635973 SLC4A10Q6U841 1118 aa22.96■■□□□ 1.27
CLN3-243ENST00000635973 CNTROBQ8N137 903 aa22.96■■□□□ 1.27
CLN3-243ENST00000635973 MKRN1Q9UHC7 482 aaKnown RBP22.96■■□□□ 1.27
CLN3-243ENST00000635973 KIF16BQ96L93 1317 aa22.96■■□□□ 1.27
CLN3-243ENST00000635973 PASKQ96RG2 1323 aa22.96■■□□□ 1.27
CLN3-243ENST00000635973 TMEM88BA6NKF7 163 aa22.95■■□□□ 1.26
CLN3-243ENST00000635973 CWF19L2Q2TBE0 894 aaKnown RBP22.95■■□□□ 1.26
CLN3-243ENST00000635973 ADAMTSL1Q8N6G6 1762 aa22.95■■□□□ 1.26
CLN3-243ENST00000635973 NEURL1BA8MQ27 555 aa22.94■■□□□ 1.26
CLN3-243ENST00000635973 ITGBL1O95965 494 aaPredicted RBP22.94■■□□□ 1.26
CLN3-243ENST00000635973 SCNN1DP51172 638 aa22.94■■□□□ 1.26
CLN3-243ENST00000635973 KIAA2012Q0VF49 1180 aa22.94■■□□□ 1.26
CLN3-243ENST00000635973 ZBTB38Q8NAP3 1195 aaPredicted RBP22.94■■□□□ 1.26
CLN3-243ENST00000635973 LINS1Q8NG48 757 aa22.94■■□□□ 1.26
CLN3-243ENST00000635973 NSFL1CQ9UNZ2 370 aaKnown RBP22.94■■□□□ 1.26
CLN3-243ENST00000635973 IGKV5-2P06315 115 aa22.93■■□□□ 1.26
CLN3-243ENST00000635973 EPS15P42566 896 aa22.93■■□□□ 1.26
CLN3-243ENST00000635973 TNIP1Q15025 636 aa22.93■■□□□ 1.26
CLN3-243ENST00000635973 USP50Q70EL3 339 aaPredicted RBP22.93■■□□□ 1.26
CLN3-243ENST00000635973 TNS4Q8IZW8 715 aa22.93■■□□□ 1.26
CLN3-243ENST00000635973 NOB1Q9ULX3 412 aaKnown RBP22.93■■□□□ 1.26
CLN3-243ENST00000635973 LRRC37AA6NMS7 1700 aa22.92■■□□□ 1.26
CLN3-243ENST00000635973 CXCL9Q07325 125 aa22.92■■□□□ 1.26
CLN3-243ENST00000635973 CIAPIN1Q6FI81 312 aa22.92■■□□□ 1.26
CLN3-243ENST00000635973 CELF1Q92879 486 aaKnown RBP22.92■■□□□ 1.26
CLN3-243ENST00000635973 LTBP1Q14766 1721 aa22.91■■□□□ 1.26
CLN3-243ENST00000635973 C6orf229H3BNL8 230 aa22.91■■□□□ 1.26
CLN3-243ENST00000635973 BRPF1P55201 1214 aaPredicted RBP22.91■■□□□ 1.26
CLN3-243ENST00000635973 WASHC4Q2M389 1173 aa22.91■■□□□ 1.26
CLN3-243ENST00000635973 CAPN15O75808 1086 aa22.9■■□□□ 1.26
CLN3-243ENST00000635973 BCAR3O75815 825 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms