RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 PA2G4Q9UQ80 394 aaKnown RBP18.42■□□□□ 0.54
LIMS3-206ENST00000631420 HMMRO75330 724 aa18.41■□□□□ 0.54
LIMS3-206ENST00000631420 FAM161AQ3B820 660 aa18.41■□□□□ 0.54
LIMS3-206ENST00000631420 NLRP3Q96P20 1036 aa18.41■□□□□ 0.54
LIMS3-206ENST00000631420 HSP90B1P14625 803 aaKnown RBP18.4■□□□□ 0.54
LIMS3-206ENST00000631420 SF3B3Q15393 1217 aaKnown RBP18.4■□□□□ 0.54
LIMS3-206ENST00000631420 KDM2BQ8NHM5 1336 aa18.4■□□□□ 0.54
LIMS3-206ENST00000631420 ZNF594Q96JF6 807 aaPredicted RBP18.39■□□□□ 0.53
LIMS3-206ENST00000631420 DCTPP1Q9H773 170 aa18.39■□□□□ 0.53
LIMS3-206ENST00000631420 SEC31BQ9NQW1 1179 aa18.39■□□□□ 0.53
LIMS3-206ENST00000631420 CASZ1Q86V15 1759 aa18.39■□□□□ 0.53
LIMS3-206ENST00000631420 ITGA6P23229 1130 aa18.38■□□□□ 0.53
LIMS3-206ENST00000631420 PTPN12Q05209 780 aaKnown RBP18.38■□□□□ 0.53
LIMS3-206ENST00000631420 SOCS7O14512 581 aa18.38■□□□□ 0.53
LIMS3-206ENST00000631420 SURF6O75683 361 aaKnown RBP18.38■□□□□ 0.53
LIMS3-206ENST00000631420 CCDC57Q2TAC2 916 aa18.38■□□□□ 0.53
LIMS3-206ENST00000631420 CCDC152Q4G0S7 254 aa18.38■□□□□ 0.53
LIMS3-206ENST00000631420 EXOC6BQ9Y2D4 811 aa18.38■□□□□ 0.53
LIMS3-206ENST00000631420 DDX60Q8IY21 1712 aaKnown RBP18.38■□□□□ 0.53
LIMS3-206ENST00000631420 IFIT5Q13325 482 aaKnown RBP18.37■□□□□ 0.53
LIMS3-206ENST00000631420 BRIP1Q9BX63 1249 aa18.37■□□□□ 0.53
LIMS3-206ENST00000631420 SIL1Q9H173 461 aa18.37■□□□□ 0.53
LIMS3-206ENST00000631420 ANKRD18BA2A2Z9 1011 aa18.36■□□□□ 0.53
LIMS3-206ENST00000631420 CENPQQ7L2Z9 268 aaPredicted RBP18.36■□□□□ 0.53
LIMS3-206ENST00000631420 SMC5Q8IY18 1101 aa18.36■□□□□ 0.53
LIMS3-206ENST00000631420 SGIP1Q9BQI5 828 aa18.36■□□□□ 0.53
LIMS3-206ENST00000631420 COPRSQ9NQ92 184 aa18.36■□□□□ 0.53
LIMS3-206ENST00000631420 KLRG2A4D1S0 409 aaPredicted RBP18.35■□□□□ 0.53
LIMS3-206ENST00000631420 APBB1O00213 710 aa18.35■□□□□ 0.53
LIMS3-206ENST00000631420 NOP58Q9Y2X3 529 aaKnown RBP18.35■□□□□ 0.53
LIMS3-206ENST00000631420 NRXN2Q9P2S2 1712 aa18.35■□□□□ 0.53
LIMS3-206ENST00000631420 POLD1P28340 1107 aa18.34■□□□□ 0.53
LIMS3-206ENST00000631420 PTGER2P43116 358 aa18.34■□□□□ 0.53
LIMS3-206ENST00000631420 GCC1Q96CN9 775 aa18.34■□□□□ 0.53
LIMS3-206ENST00000631420 PUS3Q9BZE2 481 aaKnown RBP18.34■□□□□ 0.53
LIMS3-206ENST00000631420 RIC1Q4ADV7 1423 aa18.34■□□□□ 0.53
LIMS3-206ENST00000631420 CRY2Q49AN0 593 aa18.34■□□□□ 0.53
LIMS3-206ENST00000631420 LRRC24Q50LG9 513 aa18.34■□□□□ 0.53
LIMS3-206ENST00000631420 CELF1Q92879 486 aaKnown RBP18.34■□□□□ 0.53
LIMS3-206ENST00000631420 TNRC6CQ9HCJ0 1690 aaKnown RBP18.33■□□□□ 0.53
LIMS3-206ENST00000631420 RTL9Q8NET4 1388 aa18.33■□□□□ 0.53
LIMS3-206ENST00000631420 TAF7LQ5H9L4 462 aa18.33■□□□□ 0.52
LIMS3-206ENST00000631420 PDE6BP35913 854 aa18.32■□□□□ 0.52
LIMS3-206ENST00000631420 G3BP1Q13283 466 aaKnown RBP eCLIP18.32■□□□□ 0.52
LIMS3-206ENST00000631420 ANKRD45Q5TZF3 282 aa18.32■□□□□ 0.52
LIMS3-206ENST00000631420 DDX46Q7L014 1031 aaKnown RBP18.32■□□□□ 0.52
LIMS3-206ENST00000631420 EYA2O00167 538 aa18.31■□□□□ 0.52
LIMS3-206ENST00000631420 SMARCA5O60264 1052 aaPredicted RBP18.31■□□□□ 0.52
LIMS3-206ENST00000631420 SASH1O94885 1247 aa18.31■□□□□ 0.52
LIMS3-206ENST00000631420 LDHAL6AQ6ZMR3 332 aa18.31■□□□□ 0.52
LIMS3-206ENST00000631420 ATG9AQ7Z3C6 839 aa18.31■□□□□ 0.52
LIMS3-206ENST00000631420 SKAP1Q86WV1 359 aa18.31■□□□□ 0.52
LIMS3-206ENST00000631420 RPGRQ92834 1020 aaKnown RBP18.31■□□□□ 0.52
LIMS3-206ENST00000631420 BCL11AQ9H165 835 aa18.31■□□□□ 0.52
LIMS3-206ENST00000631420 PDZRN3Q9UPQ7 1066 aa18.31■□□□□ 0.52
LIMS3-206ENST00000631420 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.31■□□□□ 0.52
LIMS3-206ENST00000631420 LAMB2P55268 1798 aa18.31■□□□□ 0.52
LIMS3-206ENST00000631420 COL4A1P02462 1669 aa18.31■□□□□ 0.52
LIMS3-206ENST00000631420 SRGNP10124 158 aa18.3■□□□□ 0.52
LIMS3-206ENST00000631420 CHRNA5P30532 468 aa18.3■□□□□ 0.52
LIMS3-206ENST00000631420 OS9Q13438 667 aaPredicted RBP18.3■□□□□ 0.52
LIMS3-206ENST00000631420 HOXA10P31260 410 aaPredicted RBP18.3■□□□□ 0.52
LIMS3-206ENST00000631420 RPS8P62241 208 aaKnown RBP18.3■□□□□ 0.52
LIMS3-206ENST00000631420 C2CD5Q86YS7 1000 aa18.3■□□□□ 0.52
LIMS3-206ENST00000631420 ANKRD18AQ8IVF6 992 aa18.3■□□□□ 0.52
LIMS3-206ENST00000631420 RBM17Q96I25 401 aaKnown RBP18.3■□□□□ 0.52
LIMS3-206ENST00000631420 CDC5LQ99459 802 aaKnown RBP18.3■□□□□ 0.52
LIMS3-206ENST00000631420 SPON1Q9HCB6 807 aa18.3■□□□□ 0.52
LIMS3-206ENST00000631420 RIPOR2Q9Y4F9 1068 aa18.3■□□□□ 0.52
LIMS3-206ENST00000631420 C10orf71Q711Q0 1435 aa18.29■□□□□ 0.52
LIMS3-206ENST00000631420 RAB11FIP3O75154 756 aa18.29■□□□□ 0.52
LIMS3-206ENST00000631420 IGHMBP2P38935 993 aaKnown RBP18.29■□□□□ 0.52
LIMS3-206ENST00000631420 NUCB1Q02818 461 aa18.29■□□□□ 0.52
LIMS3-206ENST00000631420 HSP90AB4PQ58FF6 505 aa18.29■□□□□ 0.52
LIMS3-206ENST00000631420 RHPN1Q8TCX5 695 aa18.29■□□□□ 0.52
LIMS3-206ENST00000631420 MPHOSPH8Q99549 860 aa18.29■□□□□ 0.52
LIMS3-206ENST00000631420 IL1RAPL2Q9NP60 686 aa18.29■□□□□ 0.52
LIMS3-206ENST00000631420 CNNM1Q9NRU3 951 aa18.29■□□□□ 0.52
LIMS3-206ENST00000631420 MYH3P11055 1940 aa18.28■□□□□ 0.52
LIMS3-206ENST00000631420 ANKRD31Q8N7Z5 1873 aa18.28■□□□□ 0.52
LIMS3-206ENST00000631420 H0YIN7 160 aa18.28■□□□□ 0.52
LIMS3-206ENST00000631420 CIAO1O76071 339 aa18.28■□□□□ 0.52
LIMS3-206ENST00000631420 GRAPQ13588 217 aa18.28■□□□□ 0.52
LIMS3-206ENST00000631420 SLC51AQ86UW1 340 aa18.28■□□□□ 0.52
LIMS3-206ENST00000631420 GRAPLQ8TC17 118 aaPredicted RBP18.28■□□□□ 0.52
LIMS3-206ENST00000631420 LRRCC1Q9C099 1032 aa18.28■□□□□ 0.52
LIMS3-206ENST00000631420 LNPKQ9C0E8 428 aa18.28■□□□□ 0.52
LIMS3-206ENST00000631420 NPR1P16066 1061 aa18.27■□□□□ 0.52
LIMS3-206ENST00000631420 IL15P40933 162 aaPredicted RBP18.27■□□□□ 0.52
LIMS3-206ENST00000631420 TFCP2Q12800 502 aa18.27■□□□□ 0.52
LIMS3-206ENST00000631420 CHD1LQ86WJ1 897 aa18.27■□□□□ 0.52
LIMS3-206ENST00000631420 C16orf71Q8IYS4 520 aaPredicted RBP18.27■□□□□ 0.52
LIMS3-206ENST00000631420 ZNF622Q969S3 477 aaKnown RBP eCLIP18.27■□□□□ 0.52
LIMS3-206ENST00000631420 KIF1BPQ96EK5 621 aa18.27■□□□□ 0.52
LIMS3-206ENST00000631420 MASTLQ96GX5 879 aa18.27■□□□□ 0.52
LIMS3-206ENST00000631420 CRAMP1Q96RY5 1269 aa18.27■□□□□ 0.52
LIMS3-206ENST00000631420 PPP1R1BQ9UD71 204 aaPredicted RBP18.27■□□□□ 0.52
LIMS3-206ENST00000631420 FBXO3Q9UK99 471 aa18.27■□□□□ 0.52
LIMS3-206ENST00000631420 A0A0G2JLW4 131 aa18.26■□□□□ 0.51
LIMS3-206ENST00000631420 BSDC1Q9NW68 430 aaPredicted RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms