RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SYNE4Q8N205 404 aa22.91■■□□□ 1.26
CLN3-239ENST00000628023 RPGRQ92834 1020 aaKnown RBP22.91■■□□□ 1.26
CLN3-239ENST00000628023 CACNA1SQ13698 1873 aa22.9■■□□□ 1.26
CLN3-239ENST00000628023 IRS4O14654 1257 aaPredicted RBP22.9■■□□□ 1.26
CLN3-239ENST00000628023 BCAR3O75815 825 aa22.9■■□□□ 1.26
CLN3-239ENST00000628023 PCCAP05165 728 aaPredicted RBP22.9■■□□□ 1.26
CLN3-239ENST00000628023 HSP90B1P14625 803 aaKnown RBP22.9■■□□□ 1.26
CLN3-239ENST00000628023 BEND3Q5T5X7 828 aa22.9■■□□□ 1.26
CLN3-239ENST00000628023 FRAT1Q92837 279 aaPredicted RBP22.9■■□□□ 1.26
CLN3-239ENST00000628023 API5Q9BZZ5 524 aaKnown RBP22.9■■□□□ 1.26
CLN3-239ENST00000628023 GCKRQ14397 625 aa22.89■■□□□ 1.25
CLN3-239ENST00000628023 SLC10A5Q5PT55 438 aa22.89■■□□□ 1.25
CLN3-239ENST00000628023 RTKN2Q8IZC4 609 aa22.89■■□□□ 1.25
CLN3-239ENST00000628023 C7orf43Q8WVR3 580 aa22.89■■□□□ 1.25
CLN3-239ENST00000628023 JARID2Q92833 1246 aaPredicted RBP22.89■■□□□ 1.25
CLN3-239ENST00000628023 KLRG1Q96E93 195 aa22.89■■□□□ 1.25
CLN3-239ENST00000628023 SRCIN1Q9C0H9 1055 aa22.89■■□□□ 1.25
CLN3-239ENST00000628023 IPO8O15397 1037 aaKnown RBP22.88■■□□□ 1.25
CLN3-239ENST00000628023 HTRA3P83110 453 aa22.87■■□□□ 1.25
CLN3-239ENST00000628023 FKBP4Q02790 459 aaKnown RBP eCLIP22.87■■□□□ 1.25
CLN3-239ENST00000628023 CRY2Q49AN0 593 aa22.87■■□□□ 1.25
CLN3-239ENST00000628023 C3orf67Q6ZVT6 689 aa22.87■■□□□ 1.25
CLN3-239ENST00000628023 UBE3BQ7Z3V4 1068 aa22.87■■□□□ 1.25
CLN3-239ENST00000628023 POTECB2RU33 542 aa22.86■■□□□ 1.25
CLN3-239ENST00000628023 ALDH1L1O75891 902 aa22.86■■□□□ 1.25
CLN3-239ENST00000628023 DDX60Q8IY21 1712 aaKnown RBP22.85■■□□□ 1.25
CLN3-239ENST00000628023 DDNO94850 711 aaPredicted RBP22.85■■□□□ 1.25
CLN3-239ENST00000628023 ARHGAP45Q92619 1136 aa22.85■■□□□ 1.25
CLN3-239ENST00000628023 RBM17Q96I25 401 aaKnown RBP22.85■■□□□ 1.25
CLN3-239ENST00000628023 C9orf78Q9NZ63 289 aaPredicted RBP22.85■■□□□ 1.25
CLN3-239ENST00000628023 LAMB2P55268 1798 aa22.85■■□□□ 1.25
CLN3-239ENST00000628023 CDHR2Q9BYE9 1310 aa22.84■■□□□ 1.25
CLN3-239ENST00000628023 IQCA1LA6NCM1 817 aa22.84■■□□□ 1.25
CLN3-239ENST00000628023 GRM8O00222 908 aa22.83■■□□□ 1.25
CLN3-239ENST00000628023 PDE8AO60658 829 aa22.83■■□□□ 1.25
CLN3-239ENST00000628023 ZKSCAN2Q63HK3 967 aa22.83■■□□□ 1.25
CLN3-239ENST00000628023 RCAN3Q9UKA8 241 aa22.83■■□□□ 1.25
CLN3-239ENST00000628023 H7C1W4 665 aa22.82■■□□□ 1.24
CLN3-239ENST00000628023 CCT4P50991 539 aaKnown RBP22.82■■□□□ 1.24
CLN3-239ENST00000628023 CC2D2BQ6DHV5 1058 aa22.82■■□□□ 1.24
CLN3-239ENST00000628023 ATF7IPQ6VMQ6 1270 aa22.82■■□□□ 1.24
CLN3-239ENST00000628023 DDX46Q7L014 1031 aaKnown RBP22.82■■□□□ 1.24
CLN3-239ENST00000628023 ZNF277Q9NRM2 450 aaPredicted RBP22.82■■□□□ 1.24
CLN3-239ENST00000628023 TRIM27P14373 513 aa22.81■■□□□ 1.24
CLN3-239ENST00000628023 CHADLQ6NUI6 762 aa22.81■■□□□ 1.24
CLN3-239ENST00000628023 JMYQ8N9B5 988 aa22.81■■□□□ 1.24
CLN3-239ENST00000628023 HOXA10P31260 410 aaPredicted RBP22.8■■□□□ 1.24
CLN3-239ENST00000628023 SF3B3Q15393 1217 aaKnown RBP22.8■■□□□ 1.24
CLN3-239ENST00000628023 CCDC152Q4G0S7 254 aa22.8■■□□□ 1.24
CLN3-239ENST00000628023 GRIPAP1Q4V328 841 aa22.8■■□□□ 1.24
CLN3-239ENST00000628023 FTSJ3Q8IY81 847 aaKnown RBP22.8■■□□□ 1.24
CLN3-239ENST00000628023 CLUAP1Q96AJ1 413 aa22.8■■□□□ 1.24
CLN3-239ENST00000628023 IARSP41252 1262 aaKnown RBP22.79■■□□□ 1.24
CLN3-239ENST00000628023 CTSWP56202 376 aa22.79■■□□□ 1.24
CLN3-239ENST00000628023 OLFM4Q6UX06 510 aa22.79■■□□□ 1.24
CLN3-239ENST00000628023 JDP2Q8WYK2 163 aa22.79■■□□□ 1.24
CLN3-239ENST00000628023 L3MBTL3Q96JM7 780 aaPredicted RBP22.79■■□□□ 1.24
CLN3-239ENST00000628023 CCDC85AQ96PX6 553 aaPredicted RBP22.79■■□□□ 1.24
CLN3-239ENST00000628023 CRAMP1Q96RY5 1269 aa22.79■■□□□ 1.24
CLN3-239ENST00000628023 TMX4Q9H1E5 349 aaPredicted RBP22.79■■□□□ 1.24
CLN3-239ENST00000628023 ABCC4O15439 1325 aa22.79■■□□□ 1.24
CLN3-239ENST00000628023 PSMD1Q99460 953 aa22.78■■□□□ 1.24
CLN3-239ENST00000628023 PPEF1O14829 653 aaPredicted RBP22.77■■□□□ 1.24
CLN3-239ENST00000628023 CASP7P55210 303 aa22.77■■□□□ 1.24
CLN3-239ENST00000628023 PLA2G12BQ9BX93 195 aa22.76■■□□□ 1.23
CLN3-239ENST00000628023 TNNQ9UQP3 1299 aa22.76■■□□□ 1.23
CLN3-239ENST00000628023 MYH3P11055 1940 aa22.76■■□□□ 1.23
CLN3-239ENST00000628023 GRAPQ13588 217 aa22.75■■□□□ 1.23
CLN3-239ENST00000628023 LDHDQ86WU2 507 aa22.75■■□□□ 1.23
CLN3-239ENST00000628023 GRAPLQ8TC17 118 aaPredicted RBP22.75■■□□□ 1.23
CLN3-239ENST00000628023 TAF1DQ9H5J8 278 aaPredicted RBP22.75■■□□□ 1.23
CLN3-239ENST00000628023 HACL1Q9UJ83 578 aa22.75■■□□□ 1.23
CLN3-239ENST00000628023 SCN4AP35499 1836 aa22.74■■□□□ 1.23
CLN3-239ENST00000628023 NBPF7P0C2Y1 421 aaPredicted RBP22.74■■□□□ 1.23
CLN3-239ENST00000628023 INTS3Q68E01 1043 aaKnown RBP22.74■■□□□ 1.23
CLN3-239ENST00000628023 CHMP3Q9Y3E7 222 aa22.74■■□□□ 1.23
CLN3-239ENST00000628023 FZD9O00144 591 aa22.73■■□□□ 1.23
CLN3-239ENST00000628023 DZIP1LQ8IYY4 767 aaKnown RBP22.73■■□□□ 1.23
CLN3-239ENST00000628023 TTLL11Q8NHH1 800 aa22.73■■□□□ 1.23
CLN3-239ENST00000628023 UTYO14607 1347 aa22.73■■□□□ 1.23
CLN3-239ENST00000628023 ZNF541Q9H0D2 1346 aa22.73■■□□□ 1.23
CLN3-239ENST00000628023 BBOX1O75936 387 aa22.72■■□□□ 1.23
CLN3-239ENST00000628023 POTEIP0CG38 1075 aa22.72■■□□□ 1.23
CLN3-239ENST00000628023 POTEJP0CG39 1038 aa22.72■■□□□ 1.23
CLN3-239ENST00000628023 EIF6P56537 245 aaKnown RBP22.72■■□□□ 1.23
CLN3-239ENST00000628023 EAPPQ56P03 285 aaPredicted RBP22.72■■□□□ 1.23
CLN3-239ENST00000628023 PNMA8AQ86V59 439 aaPredicted RBP22.72■■□□□ 1.23
CLN3-239ENST00000628023 GPC2Q8N158 579 aa22.72■■□□□ 1.23
CLN3-239ENST00000628023 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.72■■□□□ 1.23
CLN3-239ENST00000628023 SUCLG2Q96I99 432 aa22.72■■□□□ 1.23
CLN3-239ENST00000628023 CDC5LQ99459 802 aaKnown RBP22.72■■□□□ 1.23
CLN3-239ENST00000628023 USP44Q9H0E7 712 aa22.72■■□□□ 1.23
CLN3-239ENST00000628023 GREM2Q9H772 168 aa22.72■■□□□ 1.23
CLN3-239ENST00000628023 SEC31BQ9NQW1 1179 aa22.72■■□□□ 1.23
CLN3-239ENST00000628023 CREBZFQ9NS37 354 aa22.72■■□□□ 1.23
CLN3-239ENST00000628023 UBTFL1P0CB47 393 aaPredicted RBP22.71■■□□□ 1.23
CLN3-239ENST00000628023 MS4A1P11836 297 aa22.71■■□□□ 1.23
CLN3-239ENST00000628023 FAM161AQ3B820 660 aa22.71■■□□□ 1.23
CLN3-239ENST00000628023 TMEM57Q8N5G2 664 aa22.71■■□□□ 1.23
CLN3-239ENST00000628023 CELF1Q92879 486 aaKnown RBP22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms