RNA–Protein interactions for RNA: ENST00000622166.1

IGHV3-54-201, Transcript of immunoglobulin heavy variable 3-54 (pseudogene), humanhuman

BASIC

Gene IGHV3-54, Length 353 nt, Biotype IG V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV3-54-201ENST00000622166 UBR2Q8IWV8 1755 aa11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 NUP188Q5SRE5 1749 aa11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 TNS3Q68CZ2 1445 aa11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 CYP27B1O15528 508 aa11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 DNM1Q05193 864 aaKnown RBP11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 TOB2Q14106 344 aaPredicted RBP11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 TTC5Q8N0Z6 440 aa11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 HAUS7Q99871 368 aa11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 SIL1Q9H173 461 aa11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 GPR108Q9NPR9 543 aa11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 U3KPZ7 1027 aaPredicted RBP11.46□□□□□ -0.57
IGHV3-54-201ENST00000622166 STRCP1A6NGW2 1772 aa11.46□□□□□ -0.58
IGHV3-54-201ENST00000622166 H7C1W4 665 aa11.45□□□□□ -0.58
IGHV3-54-201ENST00000622166 FIBPO43427 364 aa11.45□□□□□ -0.58
IGHV3-54-201ENST00000622166 TFCP2Q12800 502 aa11.45□□□□□ -0.58
IGHV3-54-201ENST00000622166 LARP1BQ659C4 914 aaKnown RBP11.45□□□□□ -0.58
IGHV3-54-201ENST00000622166 NECAB1Q8N987 351 aa11.45□□□□□ -0.58
IGHV3-54-201ENST00000622166 KLHDC4Q8TBB5 520 aa11.45□□□□□ -0.58
IGHV3-54-201ENST00000622166 DBNLQ9UJU6 430 aaKnown RBP11.45□□□□□ -0.58
IGHV3-54-201ENST00000622166 TJP1Q07157 1748 aa11.45□□□□□ -0.58
IGHV3-54-201ENST00000622166 PAPPAQ13219 1627 aa11.45□□□□□ -0.58
IGHV3-54-201ENST00000622166 SPEF2Q9C093 1822 aa11.44□□□□□ -0.58
IGHV3-54-201ENST00000622166 RRP9O43818 475 aaKnown RBP11.44□□□□□ -0.58
IGHV3-54-201ENST00000622166 ATF3P18847 181 aa11.44□□□□□ -0.58
IGHV3-54-201ENST00000622166 CABP4P57796 275 aa11.44□□□□□ -0.58
IGHV3-54-201ENST00000622166 KRT85P78386 507 aa11.44□□□□□ -0.58
IGHV3-54-201ENST00000622166 ZNF589Q86UQ0 364 aaPredicted RBP11.44□□□□□ -0.58
IGHV3-54-201ENST00000622166 ZNF609O15014 1411 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 PALLDQ8WX93 1383 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 SPATA31A3Q5VYP0 1347 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 SH3TC1Q8TE82 1336 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 VPS37CA5D8V6 355 aaPredicted RBP11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 KDM4AO75164 1064 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 CSB-PGBD3P0DP91 1061 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 FOXO4P98177 505 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 UBE3BQ7Z3V4 1068 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 TTC6Q86TZ1 520 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 DDX54Q8TDD1 881 aaKnown RBP11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 TAF6LQ9Y6J9 622 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 LAMA4Q16363 1823 aa11.43□□□□□ -0.58
IGHV3-54-201ENST00000622166 A0A087WZG4 1122 aa11.42□□□□□ -0.58
IGHV3-54-201ENST00000622166 PTMAP06454 111 aaKnown RBP11.42□□□□□ -0.58
IGHV3-54-201ENST00000622166 COL9A3Q14050 684 aaPredicted RBP11.42□□□□□ -0.58
IGHV3-54-201ENST00000622166 MCMDC2Q4G0Z9 681 aa11.42□□□□□ -0.58
IGHV3-54-201ENST00000622166 KBTBD3Q8NAB2 608 aa11.42□□□□□ -0.58
IGHV3-54-201ENST00000622166 NEK1Q96PY6 1258 aa11.42□□□□□ -0.58
IGHV3-54-201ENST00000622166 DBNDD2Q9BQY9 259 aa11.42□□□□□ -0.58
IGHV3-54-201ENST00000622166 SCAND2PQ9GZW5 306 aaPredicted RBP11.42□□□□□ -0.58
IGHV3-54-201ENST00000622166 HELLSQ9NRZ9 838 aa11.42□□□□□ -0.58
IGHV3-54-201ENST00000622166 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.42□□□□□ -0.58
IGHV3-54-201ENST00000622166 KCPQ6ZWJ8 1503 aa11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 MYH15Q9Y2K3 1946 aa11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 ERVV-2B6SEH9 535 aa11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 ADCY5O95622 1261 aa11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 HCLS1P14317 486 aaPredicted RBP11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 CDC37L1Q7L3B6 337 aa11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 ATG9AQ7Z3C6 839 aa11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 GTF3C6Q969F1 213 aa11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 EDC3Q96F86 508 aaKnown RBP11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 LLPHQ9BRT6 129 aaKnown RBP11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 ATG3Q9NT62 314 aa11.41□□□□□ -0.58
IGHV3-54-201ENST00000622166 NBPF26B4DH59 902 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 ATP5J2-PTCD1G3V325 749 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 PTCD1O75127 700 aaKnown RBP11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 TPM3P06753 285 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 HMGB1P09429 215 aaKnown RBP11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 CCDC192P0DO97 292 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 KIAA2012Q0VF49 1180 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 RESTQ13127 1097 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 NKX1-1Q15270 411 aaPredicted RBP11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 NBPF14Q5TI25 921 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 NBPF10Q6P3W6 841 aaKnown RBP11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 GIMAP6Q6P9H5 292 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 LMBR1LQ6UX01 489 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 RBM43Q6ZSC3 357 aaKnown RBP11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 CADPS2Q86UW7 1296 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 NBPF15Q8N660 670 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 SMARCC2Q8TAQ2 1214 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 JARID2Q92833 1246 aaPredicted RBP11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 DSCC1Q9BVC3 393 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 DDX19AQ9NUU7 478 aaKnown RBP11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 CWC25Q9NXE8 425 aaPredicted RBP11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 USP25Q9UHP3 1055 aa11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 R3HCC1Q9Y3T6 440 aaKnown RBP11.4□□□□□ -0.58
IGHV3-54-201ENST00000622166 PFKFB2O60825 505 aa11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 CIAO1O76071 339 aa11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 IL15P40933 162 aaPredicted RBP11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 CHRNA2Q15822 529 aa11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 ZMYM1Q5SVZ6 1142 aa11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 TNS2Q63HR2 1409 aa11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 SASS6Q6UVJ0 657 aa11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 Q6ZUG5 572 aa11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 LEO1Q8WVC0 666 aaPredicted RBP11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 TCEANC2Q96MN5 208 aa11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 AGXT2Q9BYV1 514 aa11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 NUP62CLQ9H1M0 184 aa11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 ZSCAN16Q9H4T2 348 aaPredicted RBP11.39□□□□□ -0.59
IGHV3-54-201ENST00000622166 PCDH11XQ9BZA7 1347 aa11.38□□□□□ -0.59
IGHV3-54-201ENST00000622166 PCDH11YQ9BZA8 1340 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms