RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 CD163Q86VB7 1156 aa10.25□□□□□ -0.77
VPS29-212ENST00000621131 MKNK1Q9BUB5 465 aa10.25□□□□□ -0.77
VPS29-212ENST00000621131 ZBTB42B2RXF5 422 aa10.24□□□□□ -0.77
VPS29-212ENST00000621131 TNFRSF10BO14763 440 aa10.24□□□□□ -0.77
VPS29-212ENST00000621131 PTCD1O75127 700 aaKnown RBP10.24□□□□□ -0.77
VPS29-212ENST00000621131 SUZ12Q15022 739 aaKnown RBP10.24□□□□□ -0.77
VPS29-212ENST00000621131 KRT25Q7Z3Z0 450 aa10.24□□□□□ -0.77
VPS29-212ENST00000621131 KCNMB2Q9Y691 235 aa10.24□□□□□ -0.77
VPS29-212ENST00000621131 C14orf37Q86TY3 774 aa10.23□□□□□ -0.77
VPS29-212ENST00000621131 CMTR1Q8N1G2 835 aaKnown RBP10.23□□□□□ -0.77
VPS29-212ENST00000621131 SPDYE3A6NKU9 549 aa10.22□□□□□ -0.77
VPS29-212ENST00000621131 LILRB5O75023 590 aa10.22□□□□□ -0.77
VPS29-212ENST00000621131 SPATA31C1P0DKV0 1188 aa10.22□□□□□ -0.77
VPS29-212ENST00000621131 CHRNA4P43681 627 aa10.22□□□□□ -0.77
VPS29-212ENST00000621131 ILDR2Q71H61 639 aa10.22□□□□□ -0.77
VPS29-212ENST00000621131 DHX32Q7L7V1 743 aaKnown RBP10.22□□□□□ -0.77
VPS29-212ENST00000621131 RGL4Q8IZJ4 473 aa10.22□□□□□ -0.77
VPS29-212ENST00000621131 TRPM4Q8TD43 1214 aa10.22□□□□□ -0.77
VPS29-212ENST00000621131 NAGPAQ9UK23 515 aa10.22□□□□□ -0.77
VPS29-212ENST00000621131 RARAP10276 462 aa10.21□□□□□ -0.77
VPS29-212ENST00000621131 ATP2B4P23634 1241 aa10.21□□□□□ -0.77
VPS29-212ENST00000621131 NUDT8Q8WV74 236 aa10.21□□□□□ -0.77
VPS29-212ENST00000621131 XYLBO75191 536 aa10.2□□□□□ -0.78
VPS29-212ENST00000621131 PPP1R15AO75807 674 aaPredicted RBP10.2□□□□□ -0.78
VPS29-212ENST00000621131 PCSK7Q16549 785 aa10.2□□□□□ -0.78
VPS29-212ENST00000621131 PSAPL1Q6NUJ1 521 aa10.2□□□□□ -0.78
VPS29-212ENST00000621131 AFF1P51825 1210 aaKnown RBP10.19□□□□□ -0.78
VPS29-212ENST00000621131 JPH1Q9HDC5 661 aaPredicted RBP10.19□□□□□ -0.78
VPS29-212ENST00000621131 TLR7Q9NYK1 1049 aaKnown RBP10.19□□□□□ -0.78
VPS29-212ENST00000621131 TMEM88BA6NKF7 163 aa10.18□□□□□ -0.78
VPS29-212ENST00000621131 BAG6P46379 1132 aa10.18□□□□□ -0.78
VPS29-212ENST00000621131 TRIM28Q13263 835 aaKnown RBP10.18□□□□□ -0.78
VPS29-212ENST00000621131 PRRT3Q5FWE3 981 aa10.18□□□□□ -0.78
VPS29-212ENST00000621131 FAM35AQ86V20 835 aa10.18□□□□□ -0.78
VPS29-212ENST00000621131 STIM2Q9P246 746 aa10.18□□□□□ -0.78
VPS29-212ENST00000621131 SEPT3Q9UH03 358 aa10.18□□□□□ -0.78
VPS29-212ENST00000621131 FAM229AH3BQW9 127 aa10.17□□□□□ -0.78
VPS29-212ENST00000621131 ZBTB39O15060 712 aa10.17□□□□□ -0.78
VPS29-212ENST00000621131 RGS9O75916 674 aaPredicted RBP10.17□□□□□ -0.78
VPS29-212ENST00000621131 CPB1P15086 417 aa10.17□□□□□ -0.78
VPS29-212ENST00000621131 GPLD1P80108 840 aa10.17□□□□□ -0.78
VPS29-212ENST00000621131 PERM1Q5SV97 790 aa10.17□□□□□ -0.78
VPS29-212ENST00000621131 TRAPPC3LQ5T215 181 aa10.17□□□□□ -0.78
VPS29-212ENST00000621131 LPIN3Q9BQK8 851 aa10.17□□□□□ -0.78
VPS29-212ENST00000621131 NRLP54845 237 aa10.16□□□□□ -0.78
VPS29-212ENST00000621131 MLLT1Q03111 559 aaPredicted RBP10.16□□□□□ -0.78
VPS29-212ENST00000621131 TRIP4Q15650 581 aaPredicted RBP10.16□□□□□ -0.78
VPS29-212ENST00000621131 GRIK5Q16478 980 aa10.16□□□□□ -0.78
VPS29-212ENST00000621131 FRRS1LQ9P0K9 344 aa10.16□□□□□ -0.78
VPS29-212ENST00000621131 MMP20O60882 483 aa10.15□□□□□ -0.78
VPS29-212ENST00000621131 PLAURQ03405 335 aa10.15□□□□□ -0.78
VPS29-212ENST00000621131 TTC9Q92623 222 aa10.15□□□□□ -0.78
VPS29-212ENST00000621131 A0A0A0MRY4 1105 aa10.14□□□□□ -0.79
VPS29-212ENST00000621131 SSFA2P28290 1259 aa10.14□□□□□ -0.79
VPS29-212ENST00000621131 SCNN1AP37088 669 aa10.14□□□□□ -0.79
VPS29-212ENST00000621131 ZAP70P43403 619 aa10.14□□□□□ -0.79
VPS29-212ENST00000621131 HFE2Q6ZVN8 426 aa10.14□□□□□ -0.79
VPS29-212ENST00000621131 PIK3R5Q8WYR1 880 aa10.14□□□□□ -0.79
VPS29-212ENST00000621131 FAM13BQ9NYF5 915 aa10.14□□□□□ -0.79
VPS29-212ENST00000621131 ARID4AP29374 1257 aaPredicted RBP10.13□□□□□ -0.79
VPS29-212ENST00000621131 GRIK4Q16099 956 aa10.13□□□□□ -0.79
VPS29-212ENST00000621131 ELMSAN1Q6PJG2 1045 aa10.13□□□□□ -0.79
VPS29-212ENST00000621131 NLRP13Q86W25 1043 aa10.13□□□□□ -0.79
VPS29-212ENST00000621131 LOC102724428A0A0B4J2F2 783 aa10.12□□□□□ -0.79
VPS29-212ENST00000621131 ADAM23O75077 832 aa10.12□□□□□ -0.79
VPS29-212ENST00000621131 HOXD8P13378 290 aaPredicted RBP10.12□□□□□ -0.79
VPS29-212ENST00000621131 SIK1P57059 783 aa10.12□□□□□ -0.79
VPS29-212ENST00000621131 DMRTC2Q8IXT2 367 aaPredicted RBP10.12□□□□□ -0.79
VPS29-212ENST00000621131 ABTB2Q8N961 1025 aa10.12□□□□□ -0.79
VPS29-212ENST00000621131 GPR152Q8TDT2 470 aa10.12□□□□□ -0.79
VPS29-212ENST00000621131 UBAP1LF5GYI3 381 aa10.11□□□□□ -0.79
VPS29-212ENST00000621131 J3QW42 95 aa10.11□□□□□ -0.79
VPS29-212ENST00000621131 APBA3O96018 575 aa10.11□□□□□ -0.79
VPS29-212ENST00000621131 PSAPP07602 524 aa10.11□□□□□ -0.79
VPS29-212ENST00000621131 SOX18P35713 384 aa10.11□□□□□ -0.79
VPS29-212ENST00000621131 GATA4P43694 442 aa10.11□□□□□ -0.79
VPS29-212ENST00000621131 MSL1Q68DK7 614 aa10.11□□□□□ -0.79
VPS29-212ENST00000621131 FURINP09958 794 aa10.1□□□□□ -0.79
VPS29-212ENST00000621131 SMG9Q9H0W8 520 aaKnown RBP10.1□□□□□ -0.79
VPS29-212ENST00000621131 CARNS1A5YM72 827 aa10.09□□□□□ -0.79
VPS29-212ENST00000621131 SELPP16109 830 aa10.09□□□□□ -0.79
VPS29-212ENST00000621131 HELQQ8TDG4 1101 aa10.09□□□□□ -0.79
VPS29-212ENST00000621131 NACC1Q96RE7 527 aa10.09□□□□□ -0.79
VPS29-212ENST00000621131 ELNP15502 786 aa10.08□□□□□ -0.8
VPS29-212ENST00000621131 PHLDB3Q6NSJ2 640 aa10.08□□□□□ -0.8
VPS29-212ENST00000621131 FMR1NBQ8N0W7 255 aaPredicted RBP10.08□□□□□ -0.8
VPS29-212ENST00000621131 FNDC3AQ9Y2H6 1198 aaKnown RBP10.08□□□□□ -0.8
VPS29-212ENST00000621131 EIF2AK2P19525 551 aaKnown RBP10.07□□□□□ -0.8
VPS29-212ENST00000621131 RAC1P63000 192 aa10.07□□□□□ -0.8
VPS29-212ENST00000621131 DOC2BQ14184 412 aa10.07□□□□□ -0.8
VPS29-212ENST00000621131 ATCAYQ86WG3 371 aa10.07□□□□□ -0.8
VPS29-212ENST00000621131 OR13H1Q8NG92 308 aa10.07□□□□□ -0.8
VPS29-212ENST00000621131 PLD4Q96BZ4 506 aa10.07□□□□□ -0.8
VPS29-212ENST00000621131 NSUN5Q96P11 429 aaKnown RBP10.07□□□□□ -0.8
VPS29-212ENST00000621131 C9orf172C9J069 976 aa10.06□□□□□ -0.8
VPS29-212ENST00000621131 K7ELQ4 463 aaPredicted RBP10.06□□□□□ -0.8
VPS29-212ENST00000621131 GTF3C2Q8WUA4 911 aaPredicted RBP10.06□□□□□ -0.8
VPS29-212ENST00000621131 LENG1Q96BZ8 264 aaPredicted RBP10.06□□□□□ -0.8
VPS29-212ENST00000621131 COL13A1Q5TAT6 717 aaPredicted RBP10.05□□□□□ -0.8
VPS29-212ENST00000621131 WFDC8Q8IUA0 241 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms