RNA–Protein interactions for RNA: ENST00000620675.4

NEK3-210, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-210ENST00000620675 BICC1Q9H694 974 aaKnown RBP17.17■□□□□ 0.34
NEK3-210ENST00000620675 PDE8AO60658 829 aa17.16■□□□□ 0.34
NEK3-210ENST00000620675 UBTFL1P0CB47 393 aaPredicted RBP17.16■□□□□ 0.34
NEK3-210ENST00000620675 ANKRD44Q8N8A2 993 aa17.16■□□□□ 0.34
NEK3-210ENST00000620675 NLRP3Q96P20 1036 aa17.16■□□□□ 0.34
NEK3-210ENST00000620675 CD2APQ9Y5K6 639 aa17.16■□□□□ 0.34
NEK3-210ENST00000620675 SRGNP10124 158 aa17.16■□□□□ 0.34
NEK3-210ENST00000620675 MS4A1P11836 297 aa17.16■□□□□ 0.34
NEK3-210ENST00000620675 CTSWP56202 376 aa17.16■□□□□ 0.34
NEK3-210ENST00000620675 CRY2Q49AN0 593 aa17.16■□□□□ 0.34
NEK3-210ENST00000620675 TTLL11Q8NHH1 800 aa17.16■□□□□ 0.34
NEK3-210ENST00000620675 SEC31BQ9NQW1 1179 aa17.16■□□□□ 0.34
NEK3-210ENST00000620675 LMBR1LQ6UX01 489 aa17.15■□□□□ 0.34
NEK3-210ENST00000620675 PLA2G12BQ9BX93 195 aa17.15■□□□□ 0.34
NEK3-210ENST00000620675 GREM2Q9H772 168 aa17.15■□□□□ 0.34
NEK3-210ENST00000620675 PDE6BP35913 854 aa17.14■□□□□ 0.33
NEK3-210ENST00000620675 FAM161AQ3B820 660 aa17.14■□□□□ 0.33
NEK3-210ENST00000620675 EXOC6Q8TAG9 804 aa17.14■□□□□ 0.33
NEK3-210ENST00000620675 CSF1RP07333 972 aa17.13■□□□□ 0.33
NEK3-210ENST00000620675 SF3B3Q15393 1217 aaKnown RBP17.13■□□□□ 0.33
NEK3-210ENST00000620675 ZNF622Q969S3 477 aaKnown RBP eCLIP17.13■□□□□ 0.33
NEK3-210ENST00000620675 ZBTB40Q9NUA8 1239 aa17.13■□□□□ 0.33
NEK3-210ENST00000620675 DDX19BQ9UMR2 479 aa17.13■□□□□ 0.33
NEK3-210ENST00000620675 H0YIN7 160 aa17.12■□□□□ 0.33
NEK3-210ENST00000620675 GNAI3P08754 354 aa17.12■□□□□ 0.33
NEK3-210ENST00000620675 CHMP3Q9Y3E7 222 aa17.12■□□□□ 0.33
NEK3-210ENST00000620675 TGFB2P61812 414 aa17.12■□□□□ 0.33
NEK3-210ENST00000620675 RABL6Q3YEC7 729 aaPredicted RBP17.11■□□□□ 0.33
NEK3-210ENST00000620675 OLFM4Q6UX06 510 aa17.11■□□□□ 0.33
NEK3-210ENST00000620675 CELF1Q92879 486 aaKnown RBP17.11■□□□□ 0.33
NEK3-210ENST00000620675 GNAI2P04899 355 aa17.11■□□□□ 0.33
NEK3-210ENST00000620675 KLHDC4Q8TBB5 520 aa17.11■□□□□ 0.33
NEK3-210ENST00000620675 RPGRQ92834 1020 aaKnown RBP17.11■□□□□ 0.33
NEK3-210ENST00000620675 MASTLQ96GX5 879 aa17.11■□□□□ 0.33
NEK3-210ENST00000620675 ZNF594Q96JF6 807 aaPredicted RBP17.11■□□□□ 0.33
NEK3-210ENST00000620675 PNMA6EA0A0J9YXQ4 647 aa17.1■□□□□ 0.33
NEK3-210ENST00000620675 NPR1P16066 1061 aa17.1■□□□□ 0.33
NEK3-210ENST00000620675 HOXA10P31260 410 aaPredicted RBP17.1■□□□□ 0.33
NEK3-210ENST00000620675 ARFGEF1Q9Y6D6 1849 aa17.1■□□□□ 0.33
NEK3-210ENST00000620675 ITGA6P23229 1130 aa17.09■□□□□ 0.33
NEK3-210ENST00000620675 CCDC152Q4G0S7 254 aa17.09■□□□□ 0.33
NEK3-210ENST00000620675 ZNF219Q9P2Y4 722 aaPredicted RBP17.09■□□□□ 0.33
NEK3-210ENST00000620675 A0A1B0GUL6 1792 aa17.09■□□□□ 0.33
NEK3-210ENST00000620675 DDX46Q7L014 1031 aaKnown RBP17.08■□□□□ 0.33
NEK3-210ENST00000620675 STYK1Q6J9G0 422 aa17.08■□□□□ 0.32
NEK3-210ENST00000620675 PRPF40BQ6NWY9 871 aaKnown RBP17.08■□□□□ 0.32
NEK3-210ENST00000620675 SIRT2Q8IXJ6 389 aa17.08■□□□□ 0.32
NEK3-210ENST00000620675 HSP90B1P14625 803 aaKnown RBP17.07■□□□□ 0.32
NEK3-210ENST00000620675 RFX5P48382 616 aaPredicted RBP17.07■□□□□ 0.32
NEK3-210ENST00000620675 CEP85Q6P2H3 762 aa17.07■□□□□ 0.32
NEK3-210ENST00000620675 RBM17Q96I25 401 aaKnown RBP17.07■□□□□ 0.32
NEK3-210ENST00000620675 PA2G4Q9UQ80 394 aaKnown RBP17.07■□□□□ 0.32
NEK3-210ENST00000620675 PCDHB15Q9Y5E8 787 aa17.07■□□□□ 0.32
NEK3-210ENST00000620675 RTL9Q8NET4 1388 aa17.06■□□□□ 0.32
NEK3-210ENST00000620675 CRAMP1Q96RY5 1269 aa17.06■□□□□ 0.32
NEK3-210ENST00000620675 PIM2Q9P1W9 311 aa17.06■□□□□ 0.32
NEK3-210ENST00000620675 CCDC88AQ3V6T2 1871 aa17.06■□□□□ 0.32
NEK3-210ENST00000620675 SRGAP3O43295 1099 aa17.06■□□□□ 0.32
NEK3-210ENST00000620675 GRAPQ13588 217 aa17.06■□□□□ 0.32
NEK3-210ENST00000620675 TTLL6Q8N841 843 aa17.06■□□□□ 0.32
NEK3-210ENST00000620675 GRAPLQ8TC17 118 aaPredicted RBP17.06■□□□□ 0.32
NEK3-210ENST00000620675 PUS3Q9BZE2 481 aaKnown RBP17.06■□□□□ 0.32
NEK3-210ENST00000620675 BCS1LQ9Y276 419 aa17.06■□□□□ 0.32
NEK3-210ENST00000620675 LRRC37AA6NMS7 1700 aa17.05■□□□□ 0.32
NEK3-210ENST00000620675 YBX3P16989 372 aaKnown RBP eCLIP17.05■□□□□ 0.32
NEK3-210ENST00000620675 IFIT5Q13325 482 aaKnown RBP17.05■□□□□ 0.32
NEK3-210ENST00000620675 RPS8P62241 208 aaKnown RBP17.05■□□□□ 0.32
NEK3-210ENST00000620675 MTX1Q13505 466 aa17.05■□□□□ 0.32
NEK3-210ENST00000620675 C7orf43Q8WVR3 580 aa17.05■□□□□ 0.32
NEK3-210ENST00000620675 FER1L6Q2WGJ9 1857 aa17.04■□□□□ 0.32
NEK3-210ENST00000620675 ANKRD18BA2A2Z9 1011 aa17.04■□□□□ 0.32
NEK3-210ENST00000620675 C21orf2O43822 256 aa17.04■□□□□ 0.32
NEK3-210ENST00000620675 ATP8B2P98198 1209 aa17.04■□□□□ 0.32
NEK3-210ENST00000620675 PTPN12Q05209 780 aaKnown RBP17.04■□□□□ 0.32
NEK3-210ENST00000620675 CCDC57Q2TAC2 916 aa17.04■□□□□ 0.32
NEK3-210ENST00000620675 PELP1Q8IZL8 1130 aaKnown RBP17.04■□□□□ 0.32
NEK3-210ENST00000620675 CNKSR1Q969H4 720 aa17.04■□□□□ 0.32
NEK3-210ENST00000620675 PDZRN3Q9UPQ7 1066 aa17.04■□□□□ 0.32
NEK3-210ENST00000620675 WTIPA6NIX2 430 aaPredicted RBP17.03■□□□□ 0.32
NEK3-210ENST00000620675 ALDH1B1P30837 517 aa17.03■□□□□ 0.32
NEK3-210ENST00000620675 DALRD3Q5D0E6 543 aaKnown RBP17.03■□□□□ 0.32
NEK3-210ENST00000620675 SIL1Q9H173 461 aa17.03■□□□□ 0.32
NEK3-210ENST00000620675 PPEF1O14829 653 aaPredicted RBP17.03■□□□□ 0.32
NEK3-210ENST00000620675 LTBP1Q14766 1721 aa17.03■□□□□ 0.32
NEK3-210ENST00000620675 LRRC24Q50LG9 513 aa17.03■□□□□ 0.32
NEK3-210ENST00000620675 POLA2Q14181 598 aa17.02■□□□□ 0.32
NEK3-210ENST00000620675 ANKRD18AQ8IVF6 992 aa17.02■□□□□ 0.32
NEK3-210ENST00000620675 SSH3Q8TE77 659 aa17.01■□□□□ 0.31
NEK3-210ENST00000620675 CDC5LQ99459 802 aaKnown RBP17.01■□□□□ 0.31
NEK3-210ENST00000620675 SNED1Q8TER0 1413 aa17.01■□□□□ 0.31
NEK3-210ENST00000620675 SBF1O95248 1867 aa17.01■□□□□ 0.31
NEK3-210ENST00000620675 SNAP23O00161 211 aa17.01■□□□□ 0.31
NEK3-210ENST00000620675 TAF7LQ5H9L4 462 aa17.01■□□□□ 0.31
NEK3-210ENST00000620675 HELBQ8NG08 1087 aaPredicted RBP17.01■□□□□ 0.31
NEK3-210ENST00000620675 HDAC5Q9UQL6 1122 aa17.01■□□□□ 0.31
NEK3-210ENST00000620675 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.01■□□□□ 0.31
NEK3-210ENST00000620675 BBOX1O75936 387 aa17■□□□□ 0.31
NEK3-210ENST00000620675 DUOX1Q9NRD9 1551 aa17■□□□□ 0.31
NEK3-210ENST00000620675 IGHMBP2P38935 993 aaKnown RBP17■□□□□ 0.31
NEK3-210ENST00000620675 LDHAL6AQ6ZMR3 332 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms