RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ELF2Q15723 593 aa12.75□□□□□ -0.37
UPF3A-212ENST00000619079 LRRC8AQ8IWT6 810 aa12.75□□□□□ -0.37
UPF3A-212ENST00000619079 MRFAP1L1Q96HT8 127 aa12.75□□□□□ -0.37
UPF3A-212ENST00000619079 MAP2P11137 1827 aaKnown RBP12.75□□□□□ -0.37
UPF3A-212ENST00000619079 BCL9LQ86UU0 1499 aa12.75□□□□□ -0.37
UPF3A-212ENST00000619079 PLCH1Q4KWH8 1693 aa12.75□□□□□ -0.37
UPF3A-212ENST00000619079 A0A0G2JS52 829 aa12.74□□□□□ -0.37
UPF3A-212ENST00000619079 CHL1O00533 1208 aa12.74□□□□□ -0.37
UPF3A-212ENST00000619079 SGSM2O43147 1006 aa12.74□□□□□ -0.37
UPF3A-212ENST00000619079 ZNF165P49910 485 aa12.74□□□□□ -0.37
UPF3A-212ENST00000619079 WDR17Q8IZU2 1322 aa12.74□□□□□ -0.37
UPF3A-212ENST00000619079 VPS37CA5D8V6 355 aaPredicted RBP12.74□□□□□ -0.37
UPF3A-212ENST00000619079 TUBB4AP04350 444 aa12.74□□□□□ -0.37
UPF3A-212ENST00000619079 CAPN2P17655 700 aa12.74□□□□□ -0.37
UPF3A-212ENST00000619079 VPS53Q5VIR6 699 aa12.74□□□□□ -0.37
UPF3A-212ENST00000619079 CLSTN2Q9H4D0 955 aa12.74□□□□□ -0.37
UPF3A-212ENST00000619079 EIF4A2Q14240 407 aaKnown RBP12.73□□□□□ -0.37
UPF3A-212ENST00000619079 TTC6Q86TZ1 520 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 ABCC6O95255 1503 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 GOLGA6L19H0YKK7 550 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 H2AFXP16104 143 aaPredicted RBP12.73□□□□□ -0.37
UPF3A-212ENST00000619079 TPM4P67936 248 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 VPS72Q15906 364 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 CAMK4Q16566 473 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 TXLNBQ8N3L3 684 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 HYPKQ9NX55 129 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 DACT1Q9NYF0 836 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 PEAK1Q9H792 1746 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 LMO7Q8WWI1 1683 aa12.73□□□□□ -0.37
UPF3A-212ENST00000619079 SLC4A2P04920 1241 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 SKILP12757 684 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 CCDC83Q8IWF9 413 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 USHBP1Q8N6Y0 703 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 ARGLU1Q9NWB6 273 aaPredicted RBP12.72□□□□□ -0.37
UPF3A-212ENST00000619079 LIG1P18858 919 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 ATP8B2P98198 1209 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 MUM1L1Q5H9M0 696 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 CKAP2LQ8IYA6 745 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 TM6SF1Q9BZW5 370 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 EFCC1Q9HA90 598 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 CRB1P82279 1406 aa12.72□□□□□ -0.37
UPF3A-212ENST00000619079 HNRNPH2P55795 449 aaKnown RBP12.71□□□□□ -0.37
UPF3A-212ENST00000619079 DHX8Q14562 1220 aaKnown RBP12.71□□□□□ -0.37
UPF3A-212ENST00000619079 CCDC144BQ3MJ40 725 aa12.71□□□□□ -0.37
UPF3A-212ENST00000619079 SLC4A10Q6U841 1118 aa12.71□□□□□ -0.37
UPF3A-212ENST00000619079 CCDC144CPQ8IYA2 1237 aa12.71□□□□□ -0.37
UPF3A-212ENST00000619079 GJD4Q96KN9 370 aaPredicted RBP12.71□□□□□ -0.37
UPF3A-212ENST00000619079 TRIM34Q9BYJ4 488 aa12.71□□□□□ -0.37
UPF3A-212ENST00000619079 LSG1Q9H089 658 aaKnown RBP12.71□□□□□ -0.37
UPF3A-212ENST00000619079 ZNF446Q9NWS9 450 aa12.71□□□□□ -0.37
UPF3A-212ENST00000619079 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.71□□□□□ -0.37
UPF3A-212ENST00000619079 RGS17Q9UGC6 210 aaPredicted RBP12.71□□□□□ -0.37
UPF3A-212ENST00000619079 FEZ2Q9UHY8 353 aaPredicted RBP12.71□□□□□ -0.37
UPF3A-212ENST00000619079 COL18A1P39060 1754 aa12.71□□□□□ -0.37
UPF3A-212ENST00000619079 NWD2Q9ULI1 1742 aa12.71□□□□□ -0.37
UPF3A-212ENST00000619079 CASTP20810 708 aaKnown RBP12.71□□□□□ -0.38
UPF3A-212ENST00000619079 GSDMDP57764 484 aa12.71□□□□□ -0.38
UPF3A-212ENST00000619079 NBPF6Q5VWK0 638 aa12.71□□□□□ -0.38
UPF3A-212ENST00000619079 CCAR2Q8N163 923 aaKnown RBP12.71□□□□□ -0.38
UPF3A-212ENST00000619079 PLCD3Q8N3E9 789 aa12.71□□□□□ -0.38
UPF3A-212ENST00000619079 NBPF4Q96M43 638 aa12.71□□□□□ -0.38
UPF3A-212ENST00000619079 L2HGDHQ9H9P8 463 aa12.71□□□□□ -0.38
UPF3A-212ENST00000619079 PDRG1Q9NUG6 133 aa12.71□□□□□ -0.38
UPF3A-212ENST00000619079 GPS2Q13227 327 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 DCTN1Q14203 1278 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 LARP1BQ659C4 914 aaKnown RBP12.7□□□□□ -0.38
UPF3A-212ENST00000619079 FILIP1Q7Z7B0 1213 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 CNTROBQ8N137 903 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.7□□□□□ -0.38
UPF3A-212ENST00000619079 CYP46A1Q9Y6A2 500 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 V9GYY5 206 aaPredicted RBP12.7□□□□□ -0.38
UPF3A-212ENST00000619079 RGPD5Q99666 1765 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 SPATA31A1Q5TZJ5 1347 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 SPATA31A5Q5VU36 1347 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 SPATA31A7Q8IWB4 1347 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 RAB11FIP3O75154 756 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 RXRBP28702 533 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 IRX3P78415 501 aaPredicted RBP12.7□□□□□ -0.38
UPF3A-212ENST00000619079 RAD51AP2Q09MP3 1159 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 FAM98CQ17RN3 349 aaKnown RBP12.7□□□□□ -0.38
UPF3A-212ENST00000619079 POTEAQ6S8J7 498 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 RUFY2Q8WXA3 655 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 SPATA32Q96LK8 384 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 EYA1Q99502 592 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 CARD10Q9BWT7 1032 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 FHOD1Q9Y613 1164 aa12.7□□□□□ -0.38
UPF3A-212ENST00000619079 ATP8B1O43520 1251 aa12.69□□□□□ -0.38
UPF3A-212ENST00000619079 RASEFQ8IZ41 740 aa12.69□□□□□ -0.38
UPF3A-212ENST00000619079 DNAJC25Q9H1X3 360 aa12.69□□□□□ -0.38
UPF3A-212ENST00000619079 IL25Q9H293 177 aa12.69□□□□□ -0.38
UPF3A-212ENST00000619079 ATRNO75882 1429 aa12.69□□□□□ -0.38
UPF3A-212ENST00000619079 USP27XA6NNY8 438 aa12.69□□□□□ -0.38
UPF3A-212ENST00000619079 PNMA6AP0CW24 399 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-212ENST00000619079 ZSWIM6Q9HCJ5 1215 aa12.69□□□□□ -0.38
UPF3A-212ENST00000619079 CHMP3Q9Y3E7 222 aa12.69□□□□□ -0.38
UPF3A-212ENST00000619079 NRAPQ86VF7 1730 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 SOS1Q07889 1333 aaPredicted RBP12.68□□□□□ -0.38
UPF3A-212ENST00000619079 CCDC69A6NI79 296 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 CTAGE5O15320 804 aa12.68□□□□□ -0.38
UPF3A-212ENST00000619079 LARGE1O95461 756 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms