RNA–Protein interactions for RNA: ENST00000611833.4

NEK3-206, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-206ENST00000611833 TPCN1Q9ULQ1 816 aa20.58■□□□□ 0.88
NEK3-206ENST00000611833 MTMR6Q9Y217 621 aa20.58■□□□□ 0.88
NEK3-206ENST00000611833 VPS37CA5D8V6 355 aaPredicted RBP20.57■□□□□ 0.88
NEK3-206ENST00000611833 BLOC1S2Q6QNY1 142 aa20.57■□□□□ 0.88
NEK3-206ENST00000611833 BRINP3Q76B58 766 aa20.57■□□□□ 0.88
NEK3-206ENST00000611833 ZNF589Q86UQ0 364 aaPredicted RBP20.57■□□□□ 0.88
NEK3-206ENST00000611833 XIRP1Q702N8 1843 aaKnown RBP20.57■□□□□ 0.88
NEK3-206ENST00000611833 ATP5JP18859 108 aa20.56■□□□□ 0.88
NEK3-206ENST00000611833 LETM1O95202 739 aaPredicted RBP20.56■□□□□ 0.88
NEK3-206ENST00000611833 HSPA2P54652 639 aa20.56■□□□□ 0.88
NEK3-206ENST00000611833 WDR17Q8IZU2 1322 aa20.56■□□□□ 0.88
NEK3-206ENST00000611833 JCADQ9P266 1359 aa20.55■□□□□ 0.88
NEK3-206ENST00000611833 ANKRD1Q15327 319 aa20.55■□□□□ 0.88
NEK3-206ENST00000611833 CCDC39Q9UFE4 941 aa20.55■□□□□ 0.88
NEK3-206ENST00000611833 TAF6LQ9Y6J9 622 aa20.55■□□□□ 0.88
NEK3-206ENST00000611833 PCDH11XQ9BZA7 1347 aa20.55■□□□□ 0.88
NEK3-206ENST00000611833 PCDH11YQ9BZA8 1340 aa20.55■□□□□ 0.88
NEK3-206ENST00000611833 DNM1Q05193 864 aaKnown RBP20.55■□□□□ 0.88
NEK3-206ENST00000611833 PRDM11Q9NQV5 511 aa20.55■□□□□ 0.88
NEK3-206ENST00000611833 LARP1BQ659C4 914 aaKnown RBP20.54■□□□□ 0.88
NEK3-206ENST00000611833 TOM1L2Q6ZVM7 507 aa20.54■□□□□ 0.88
NEK3-206ENST00000611833 ZCRB1Q8TBF4 217 aaKnown RBP20.54■□□□□ 0.88
NEK3-206ENST00000611833 NDUFB9Q9Y6M9 179 aa20.54■□□□□ 0.88
NEK3-206ENST00000611833 LMBR1LQ6UX01 489 aa20.54■□□□□ 0.88
NEK3-206ENST00000611833 FAM184AQ8NB25 1140 aa20.54■□□□□ 0.88
NEK3-206ENST00000611833 DBNDD2Q9BQY9 259 aa20.54■□□□□ 0.88
NEK3-206ENST00000611833 HMG20BQ9P0W2 317 aa20.54■□□□□ 0.88
NEK3-206ENST00000611833 UBR2Q8IWV8 1755 aa20.53■□□□□ 0.88
NEK3-206ENST00000611833 RPS6KB1P23443 525 aa20.53■□□□□ 0.88
NEK3-206ENST00000611833 TTLL7Q6ZT98 887 aa20.53■□□□□ 0.88
NEK3-206ENST00000611833 TCEANC2Q96MN5 208 aa20.53■□□□□ 0.88
NEK3-206ENST00000611833 TAF5LO75529 589 aa20.53■□□□□ 0.88
NEK3-206ENST00000611833 FOXO4P98177 505 aa20.53■□□□□ 0.88
NEK3-206ENST00000611833 H7C1W4 665 aa20.52■□□□□ 0.88
NEK3-206ENST00000611833 ZKSCAN5Q9Y2L8 839 aa20.52■□□□□ 0.88
NEK3-206ENST00000611833 OFD1O75665 1012 aa20.52■□□□□ 0.87
NEK3-206ENST00000611833 PTMAP06454 111 aaKnown RBP20.52■□□□□ 0.87
NEK3-206ENST00000611833 PDIA4P13667 645 aaKnown RBP20.52■□□□□ 0.87
NEK3-206ENST00000611833 DNAJC2Q99543 621 aaKnown RBP20.52■□□□□ 0.87
NEK3-206ENST00000611833 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.52■□□□□ 0.87
NEK3-206ENST00000611833 NUP188Q5SRE5 1749 aa20.51■□□□□ 0.87
NEK3-206ENST00000611833 COL5A2P05997 1499 aaPredicted RBP20.51■□□□□ 0.87
NEK3-206ENST00000611833 CHGBP05060 677 aa20.51■□□□□ 0.87
NEK3-206ENST00000611833 PDCP20941 246 aa20.51■□□□□ 0.87
NEK3-206ENST00000611833 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.51■□□□□ 0.87
NEK3-206ENST00000611833 CHMP3Q9Y3E7 222 aa20.51■□□□□ 0.87
NEK3-206ENST00000611833 KCPQ6ZWJ8 1503 aa20.51■□□□□ 0.87
NEK3-206ENST00000611833 ERVV-2B6SEH9 535 aa20.5■□□□□ 0.87
NEK3-206ENST00000611833 A1BGP04217 495 aa20.5■□□□□ 0.87
NEK3-206ENST00000611833 UVSSAQ2YD98 709 aa20.5■□□□□ 0.87
NEK3-206ENST00000611833 ALDH8A1Q9H2A2 487 aaPredicted RBP20.5■□□□□ 0.87
NEK3-206ENST00000611833 ZNF500O60304 480 aaPredicted RBP20.5■□□□□ 0.87
NEK3-206ENST00000611833 MCM5P33992 734 aa20.5■□□□□ 0.87
NEK3-206ENST00000611833 KRT32Q14532 448 aa20.5■□□□□ 0.87
NEK3-206ENST00000611833 TSGA10IPQ3SY00 556 aa20.5■□□□□ 0.87
NEK3-206ENST00000611833 ZNF609O15014 1411 aa20.5■□□□□ 0.87
NEK3-206ENST00000611833 TJP1Q07157 1748 aa20.49■□□□□ 0.87
NEK3-206ENST00000611833 USPL1Q5W0Q7 1092 aa20.49■□□□□ 0.87
NEK3-206ENST00000611833 HAUS7Q99871 368 aa20.49■□□□□ 0.87
NEK3-206ENST00000611833 TOB2Q14106 344 aaPredicted RBP20.49■□□□□ 0.87
NEK3-206ENST00000611833 CWC25Q9NXE8 425 aaPredicted RBP20.49■□□□□ 0.87
NEK3-206ENST00000611833 PAPPAQ13219 1627 aa20.49■□□□□ 0.87
NEK3-206ENST00000611833 RFX7Q2KHR2 1363 aa20.48■□□□□ 0.87
NEK3-206ENST00000611833 NKX1-1Q15270 411 aaPredicted RBP20.48■□□□□ 0.87
NEK3-206ENST00000611833 ATG9AQ7Z3C6 839 aa20.48■□□□□ 0.87
NEK3-206ENST00000611833 SEC62Q99442 399 aaKnown RBP20.48■□□□□ 0.87
NEK3-206ENST00000611833 STK3Q13188 491 aa20.48■□□□□ 0.87
NEK3-206ENST00000611833 ZBTB3Q9H5J0 574 aa20.48■□□□□ 0.87
NEK3-206ENST00000611833 CCDC9Q9Y3X0 531 aaKnown RBP20.48■□□□□ 0.87
NEK3-206ENST00000611833 SOS2Q07890 1332 aaPredicted RBP20.47■□□□□ 0.87
NEK3-206ENST00000611833 SHANK3Q9BYB0 1731 aa20.47■□□□□ 0.87
NEK3-206ENST00000611833 HCLS1P14317 486 aaPredicted RBP20.47■□□□□ 0.87
NEK3-206ENST00000611833 IL2RBP14784 551 aa20.47■□□□□ 0.87
NEK3-206ENST00000611833 KRT85P78386 507 aa20.47■□□□□ 0.87
NEK3-206ENST00000611833 CCDC129Q6ZRS4 1044 aa20.47■□□□□ 0.87
NEK3-206ENST00000611833 DDX46Q7L014 1031 aaKnown RBP20.47■□□□□ 0.87
NEK3-206ENST00000611833 CDC37L1Q7L3B6 337 aa20.47■□□□□ 0.87
NEK3-206ENST00000611833 FERMT3Q86UX7 667 aa20.47■□□□□ 0.87
NEK3-206ENST00000611833 NEK1Q96PY6 1258 aa20.47■□□□□ 0.87
NEK3-206ENST00000611833 TPM2P07951 284 aa20.46■□□□□ 0.87
NEK3-206ENST00000611833 MCMDC2Q4G0Z9 681 aa20.46■□□□□ 0.87
NEK3-206ENST00000611833 GIMAP6Q6P9H5 292 aa20.46■□□□□ 0.87
NEK3-206ENST00000611833 U3KPZ7 1027 aaPredicted RBP20.46■□□□□ 0.87
NEK3-206ENST00000611833 NEUROD6Q96NK8 337 aa20.45■□□□□ 0.87
NEK3-206ENST00000611833 CARD10Q9BWT7 1032 aa20.45■□□□□ 0.86
NEK3-206ENST00000611833 USP25Q9UHP3 1055 aa20.45■□□□□ 0.86
NEK3-206ENST00000611833 KBTBD3Q8NAB2 608 aa20.44■□□□□ 0.86
NEK3-206ENST00000611833 CCDC191Q8NCU4 936 aa20.44■□□□□ 0.86
NEK3-206ENST00000611833 TNS2Q63HR2 1409 aa20.44■□□□□ 0.86
NEK3-206ENST00000611833 TIMM10P62072 90 aa20.44■□□□□ 0.86
NEK3-206ENST00000611833 SLAIN2Q9P270 581 aa20.44■□□□□ 0.86
NEK3-206ENST00000611833 KLHL34Q8N239 644 aa20.43■□□□□ 0.86
NEK3-206ENST00000611833 STRN4Q9NRL3 753 aa20.43■□□□□ 0.86
NEK3-206ENST00000611833 ABCA3Q99758 1704 aa20.43■□□□□ 0.86
NEK3-206ENST00000611833 CYP21A2P08686 494 aa20.43■□□□□ 0.86
NEK3-206ENST00000611833 HSP90B1P14625 803 aaKnown RBP20.43■□□□□ 0.86
NEK3-206ENST00000611833 LRRC24Q50LG9 513 aa20.43■□□□□ 0.86
NEK3-206ENST00000611833 FAM173BQ6P4H8 233 aa20.43■□□□□ 0.86
NEK3-206ENST00000611833 TTC6Q86TZ1 520 aa20.43■□□□□ 0.86
NEK3-206ENST00000611833 IL15P40933 162 aaPredicted RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms