RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-240	ENST00000610489	PDE6B	P35913	854 aa		13.02	□□□□□ -0.33
SYNE1-240	ENST00000610489	KLHL34	Q8N239	644 aa		13.02	□□□□□ -0.33
SYNE1-240	ENST00000610489	KLRG2	A4D1S0	409 aa	Predicted RBP	13.01	□□□□□ -0.33
SYNE1-240	ENST00000610489	UBTFL1	P0CB47	393 aa	Predicted RBP	13.01	□□□□□ -0.33
SYNE1-240	ENST00000610489	C3orf67	Q6ZVT6	689 aa		13.01	□□□□□ -0.33
SYNE1-240	ENST00000610489	PLA2G12B	Q9BX93	195 aa		13.01	□□□□□ -0.33
SYNE1-240	ENST00000610489	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.01	□□□□□ -0.33
SYNE1-240	ENST00000610489	TAF1	P21675	1872 aa		13.01	□□□□□ -0.33
SYNE1-240	ENST00000610489	PDE8A	O60658	829 aa		13	□□□□□ -0.33
SYNE1-240	ENST00000610489	GNAI3	P08754	354 aa		13	□□□□□ -0.33
SYNE1-240	ENST00000610489	NLRP3	Q96P20	1036 aa		13	□□□□□ -0.33
SYNE1-240	ENST00000610489	DDX19B	Q9UMR2	479 aa		13	□□□□□ -0.33
SYNE1-240	ENST00000610489	GOLGB1	Q14789	3259 aa	Known RBP	13	□□□□□ -0.33
SYNE1-240	ENST00000610489	ZBTB7B	O15156	539 aa	Predicted RBP	12.99	□□□□□ -0.33
SYNE1-240	ENST00000610489	CRY2	Q49AN0	593 aa		12.99	□□□□□ -0.33
SYNE1-240	ENST00000610489	KAZALD1	Q96I82	304 aa		12.99	□□□□□ -0.33
SYNE1-240	ENST00000610489	SUCLG2	Q96I99	432 aa		12.99	□□□□□ -0.33
SYNE1-240	ENST00000610489	PDZRN3	Q9UPQ7	1066 aa		12.99	□□□□□ -0.33
SYNE1-240	ENST00000610489	CTSW	P56202	376 aa		12.99	□□□□□ -0.33
SYNE1-240	ENST00000610489	TGFB2	P61812	414 aa		12.99	□□□□□ -0.33
SYNE1-240	ENST00000610489	EPHA10	Q5JZY3	1008 aa		12.99	□□□□□ -0.33
SYNE1-240	ENST00000610489	C2CD5	Q86YS7	1000 aa		12.99	□□□□□ -0.33
SYNE1-240	ENST00000610489	SPEF2	Q9C093	1822 aa		12.98	□□□□□ -0.33
SYNE1-240	ENST00000610489		H0YIN7	160 aa		12.98	□□□□□ -0.33
SYNE1-240	ENST00000610489	SRGN	P10124	158 aa		12.98	□□□□□ -0.33
SYNE1-240	ENST00000610489	CHRNA5	P30532	468 aa		12.98	□□□□□ -0.33
SYNE1-240	ENST00000610489	FOXO4	P98177	505 aa		12.98	□□□□□ -0.33
SYNE1-240	ENST00000610489	SF3B3	Q15393	1217 aa	Known RBP	12.98	□□□□□ -0.33
SYNE1-240	ENST00000610489	NLGN2	Q8NFZ4	835 aa		12.98	□□□□□ -0.33
SYNE1-240	ENST00000610489	TAOK2	Q9UL54	1235 aa		12.98	□□□□□ -0.33
SYNE1-240	ENST00000610489	HDAC5	Q9UQL6	1122 aa		12.98	□□□□□ -0.33
SYNE1-240	ENST00000610489	LRRFIP2	Q9Y608	721 aa	Known RBP	12.98	□□□□□ -0.33
SYNE1-240	ENST00000610489	DPEP1	P16444	411 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	TTLL11	Q8NHH1	800 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	RPGR	Q92834	1020 aa	Known RBP	12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	SYT17	Q9BSW7	474 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	CHMP4B	Q9H444	224 aa	Known RBP	12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	BICC1	Q9H694	974 aa	Known RBP	12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	RTL9	Q8NET4	1388 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489		A0A0G2JLW4	131 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	GNAI2	P04899	355 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	CSF1R	P07333	972 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	NPR1	P16066	1061 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	RABL6	Q3YEC7	729 aa	Predicted RBP	12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	CCDC152	Q4G0S7	254 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	ANKRD44	Q8N8A2	993 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	MASTL	Q96GX5	879 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	CRBN	Q96SW2	442 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	ZBTB40	Q9NUA8	1239 aa		12.97	□□□□□ -0.33
SYNE1-240	ENST00000610489	SLX4	Q8IY92	1834 aa		12.96	□□□□□ -0.33
SYNE1-240	ENST00000610489	COL4A1	P02462	1669 aa		12.96	□□□□□ -0.33
SYNE1-240	ENST00000610489	KCNA3	P22001	575 aa		12.96	□□□□□ -0.34
SYNE1-240	ENST00000610489	HOXA10	P31260	410 aa	Predicted RBP	12.96	□□□□□ -0.34
SYNE1-240	ENST00000610489	LMBR1L	Q6UX01	489 aa		12.96	□□□□□ -0.34
SYNE1-240	ENST00000610489	SPOCK2	Q92563	424 aa		12.96	□□□□□ -0.34
SYNE1-240	ENST00000610489	CCDC85A	Q96PX6	553 aa	Predicted RBP	12.96	□□□□□ -0.34
SYNE1-240	ENST00000610489	ARFGEF1	Q9Y6D6	1849 aa		12.96	□□□□□ -0.34
SYNE1-240	ENST00000610489	ECM2	O94769	699 aa	Predicted RBP	12.95	□□□□□ -0.34
SYNE1-240	ENST00000610489	FAM161A	Q3B820	660 aa		12.95	□□□□□ -0.34
SYNE1-240	ENST00000610489	STYK1	Q6J9G0	422 aa		12.95	□□□□□ -0.34
SYNE1-240	ENST00000610489	GREM2	Q9H772	168 aa		12.95	□□□□□ -0.34
SYNE1-240	ENST00000610489	C1orf115	Q9H7X2	142 aa		12.95	□□□□□ -0.34
SYNE1-240	ENST00000610489	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.95	□□□□□ -0.34
SYNE1-240	ENST00000610489	DDX46	Q7L014	1031 aa	Known RBP	12.94	□□□□□ -0.34
SYNE1-240	ENST00000610489	BBX	Q8WY36	941 aa	Predicted RBP	12.94	□□□□□ -0.34
SYNE1-240	ENST00000610489	ZNF622	Q969S3	477 aa	Known RBP eCLIP	12.94	□□□□□ -0.34
SYNE1-240	ENST00000610489	RBM17	Q96I25	401 aa	Known RBP	12.94	□□□□□ -0.34
SYNE1-240	ENST00000610489	CRAMP1	Q96RY5	1269 aa		12.94	□□□□□ -0.34
SYNE1-240	ENST00000610489	CHMP3	Q9Y3E7	222 aa		12.94	□□□□□ -0.34
SYNE1-240	ENST00000610489	IRX6	P78412	446 aa	Predicted RBP	12.94	□□□□□ -0.34
SYNE1-240	ENST00000610489	SEC31B	Q9NQW1	1179 aa		12.94	□□□□□ -0.34
SYNE1-240	ENST00000610489	ITGA6	P23229	1130 aa		12.93	□□□□□ -0.34
SYNE1-240	ENST00000610489	ALDH1B1	P30837	517 aa		12.93	□□□□□ -0.34
SYNE1-240	ENST00000610489	MTX1	Q13505	466 aa		12.93	□□□□□ -0.34
SYNE1-240	ENST00000610489	CNKSR1	Q969H4	720 aa		12.93	□□□□□ -0.34
SYNE1-240	ENST00000610489	PIM2	Q9P1W9	311 aa		12.93	□□□□□ -0.34
SYNE1-240	ENST00000610489	LRRC37A	A6NMS7	1700 aa		12.93	□□□□□ -0.34
SYNE1-240	ENST00000610489	IFIT5	Q13325	482 aa	Known RBP	12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489	GRAP	Q13588	217 aa		12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489	TTLL6	Q8N841	843 aa		12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489	GRAPL	Q8TC17	118 aa	Predicted RBP	12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489	ANKRD18B	A2A2Z9	1011 aa		12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489	CCDC57	Q2TAC2	916 aa		12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489	PRPF40B	Q6NWY9	871 aa	Known RBP	12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489	EXOC6	Q8TAG9	804 aa		12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489	CELF1	Q92879	486 aa	Known RBP	12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489	CDC5L	Q99459	802 aa	Known RBP	12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.92	□□□□□ -0.34
SYNE1-240	ENST00000610489		A0A1B0GUL6	1792 aa		12.91	□□□□□ -0.34
SYNE1-240	ENST00000610489	AAMP	Q13685	434 aa		12.91	□□□□□ -0.34
SYNE1-240	ENST00000610489	DALRD3	Q5D0E6	543 aa	Known RBP	12.91	□□□□□ -0.34
SYNE1-240	ENST00000610489	CEP85	Q6P2H3	762 aa		12.91	□□□□□ -0.34
SYNE1-240	ENST00000610489	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.91	□□□□□ -0.34
SYNE1-240	ENST00000610489	WWC3	Q9ULE0	1092 aa		12.91	□□□□□ -0.34
SYNE1-240	ENST00000610489	SRGAP3	O43295	1099 aa		12.9	□□□□□ -0.34
SYNE1-240	ENST00000610489	BBOX1	O75936	387 aa		12.9	□□□□□ -0.34
SYNE1-240	ENST00000610489	RPS8	P62241	208 aa	Known RBP	12.9	□□□□□ -0.34
SYNE1-240	ENST00000610489	ANKRD18A	Q8IVF6	992 aa		12.9	□□□□□ -0.34
SYNE1-240	ENST00000610489	PNMA6E	A0A0J9YXQ4	647 aa		12.89	□□□□□ -0.35
SYNE1-240	ENST00000610489	PPEF1	O14829	653 aa	Predicted RBP	12.89	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms