RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 AIDAQ96BJ3 306 aa16.25■□□□□ 0.19
UPF1-208ENST00000600012 VPS33BQ9H267 617 aa16.25■□□□□ 0.19
UPF1-208ENST00000600012 RCAN3Q9UKA8 241 aa16.25■□□□□ 0.19
UPF1-208ENST00000600012 ATP6V0A2Q9Y487 856 aa16.25■□□□□ 0.19
UPF1-208ENST00000600012 TRPM7Q96QT4 1865 aa16.25■□□□□ 0.19
UPF1-208ENST00000600012 RASSF10A6NK89 507 aa16.24■□□□□ 0.19
UPF1-208ENST00000600012 PPIP5K2O43314 1243 aa16.24■□□□□ 0.19
UPF1-208ENST00000600012 ANXA1P04083 346 aa16.24■□□□□ 0.19
UPF1-208ENST00000600012 SCNN1DP51172 638 aa16.24■□□□□ 0.19
UPF1-208ENST00000600012 PRDM10Q9NQV6 1147 aa16.24■□□□□ 0.19
UPF1-208ENST00000600012 ABCC4O15439 1325 aa16.23■□□□□ 0.19
UPF1-208ENST00000600012 CHL1O00533 1208 aa16.23■□□□□ 0.19
UPF1-208ENST00000600012 CTCFP49711 727 aaPredicted RBP16.23■□□□□ 0.19
UPF1-208ENST00000600012 DEFB115Q30KQ5 88 aa16.23■□□□□ 0.19
UPF1-208ENST00000600012 SLC51AQ86UW1 340 aa16.23■□□□□ 0.19
UPF1-208ENST00000600012 SUPT20HQ8NEM7 779 aa16.23■□□□□ 0.19
UPF1-208ENST00000600012 EPS15P42566 896 aa16.22■□□□□ 0.19
UPF1-208ENST00000600012 AOC3Q16853 763 aa16.22■□□□□ 0.19
UPF1-208ENST00000600012 USP50Q70EL3 339 aaPredicted RBP16.22■□□□□ 0.19
UPF1-208ENST00000600012 COPS6Q7L5N1 327 aa16.22■□□□□ 0.19
UPF1-208ENST00000600012 NLRP10Q86W26 655 aa16.22■□□□□ 0.19
UPF1-208ENST00000600012 DDX21Q9NR30 783 aaKnown RBP eCLIP16.22■□□□□ 0.19
UPF1-208ENST00000600012 ABT1Q9ULW3 272 aaKnown RBP16.22■□□□□ 0.19
UPF1-208ENST00000600012 BBOX1O75936 387 aa16.21■□□□□ 0.19
UPF1-208ENST00000600012 AIMP1Q12904 312 aaKnown RBP16.21■□□□□ 0.19
UPF1-208ENST00000600012 XAGE3Q8WTP9 111 aa16.21■□□□□ 0.19
UPF1-208ENST00000600012 RTFDC1Q9BY42 306 aaPredicted RBP16.21■□□□□ 0.19
UPF1-208ENST00000600012 WBP1LQ9NX94 342 aa16.21■□□□□ 0.19
UPF1-208ENST00000600012 TCIRG1Q13488 830 aa16.2■□□□□ 0.18
UPF1-208ENST00000600012 DPP8Q6V1X1 898 aaPredicted RBP16.2■□□□□ 0.18
UPF1-208ENST00000600012 SP8Q8IXZ3 490 aa16.2■□□□□ 0.18
UPF1-208ENST00000600012 NECTIN2Q92692 538 aa16.2■□□□□ 0.18
UPF1-208ENST00000600012 ZNRF3Q9ULT6 936 aa16.2■□□□□ 0.18
UPF1-208ENST00000600012 SH3TC1Q8TE82 1336 aa16.19■□□□□ 0.18
UPF1-208ENST00000600012 WDR33Q9C0J8 1336 aaKnown RBP16.19■□□□□ 0.18
UPF1-208ENST00000600012 THSD7BQ9C0I4 1608 aa16.19■□□□□ 0.18
UPF1-208ENST00000600012 TAF1P21675 1872 aa16.19■□□□□ 0.18
UPF1-208ENST00000600012 HCLS1P14317 486 aaPredicted RBP16.19■□□□□ 0.18
UPF1-208ENST00000600012 KRT24Q2M2I5 525 aa16.19■□□□□ 0.18
UPF1-208ENST00000600012 DDX46Q7L014 1031 aaKnown RBP16.19■□□□□ 0.18
UPF1-208ENST00000600012 MPNDQ8N594 471 aa16.19■□□□□ 0.18
UPF1-208ENST00000600012 ADARB2Q9NS39 739 aaKnown RBP16.19■□□□□ 0.18
UPF1-208ENST00000600012 GPRC5DQ9NZD1 345 aa16.19■□□□□ 0.18
UPF1-208ENST00000600012 TRMT112Q9UI30 125 aaKnown RBP16.19■□□□□ 0.18
UPF1-208ENST00000600012 LRRC37AA6NMS7 1700 aa16.19■□□□□ 0.18
UPF1-208ENST00000600012 CDHR2Q9BYE9 1310 aa16.19■□□□□ 0.18
UPF1-208ENST00000600012 MAP2K1Q02750 393 aaPredicted RBP16.18■□□□□ 0.18
UPF1-208ENST00000600012 CXCL9Q07325 125 aa16.18■□□□□ 0.18
UPF1-208ENST00000600012 KIAA2012Q0VF49 1180 aa16.18■□□□□ 0.18
UPF1-208ENST00000600012 GRAPQ13588 217 aa16.18■□□□□ 0.18
UPF1-208ENST00000600012 TSPYL6Q8N831 410 aa16.18■□□□□ 0.18
UPF1-208ENST00000600012 C8orf58Q8NAV2 365 aa16.18■□□□□ 0.18
UPF1-208ENST00000600012 GRAPLQ8TC17 118 aaPredicted RBP16.18■□□□□ 0.18
UPF1-208ENST00000600012 DDX60Q8IY21 1712 aaKnown RBP16.18■□□□□ 0.18
UPF1-208ENST00000600012 ELL2O00472 640 aaPredicted RBP16.17■□□□□ 0.18
UPF1-208ENST00000600012 HOXB7P09629 217 aa16.17■□□□□ 0.18
UPF1-208ENST00000600012 ECE1P42892 770 aa16.17■□□□□ 0.18
UPF1-208ENST00000600012 TMC4Q7Z404 712 aa16.17■□□□□ 0.18
UPF1-208ENST00000600012 CHPF2Q9P2E5 772 aa16.17■□□□□ 0.18
UPF1-208ENST00000600012 CT47B1P0C2W7 299 aaPredicted RBP16.16■□□□□ 0.18
UPF1-208ENST00000600012 LBX1P52954 281 aa16.16■□□□□ 0.18
UPF1-208ENST00000600012 RRP1P56182 461 aaKnown RBP16.16■□□□□ 0.18
UPF1-208ENST00000600012 IRX6P78412 446 aaPredicted RBP16.16■□□□□ 0.18
UPF1-208ENST00000600012 FMR1Q06787 632 aaKnown RBP eCLIP16.16■□□□□ 0.183e-6■■■□□ 17.2
UPF1-208ENST00000600012 TWISTNBQ3B726 338 aaPredicted RBP16.16■□□□□ 0.18
UPF1-208ENST00000600012 HDGFL1Q5TGJ6 251 aa16.16■□□□□ 0.18
UPF1-208ENST00000600012 CIAPIN1Q6FI81 312 aa16.16■□□□□ 0.18
UPF1-208ENST00000600012 PLBD2Q8NHP8 589 aa16.16■□□□□ 0.18
UPF1-208ENST00000600012 DUOX1Q9NRD9 1551 aa16.16■□□□□ 0.18
UPF1-208ENST00000600012 TRAF5O00463 557 aa16.15■□□□□ 0.18
UPF1-208ENST00000600012 BCAR3O75815 825 aa16.15■□□□□ 0.18
UPF1-208ENST00000600012 GMPSP49915 693 aaPredicted RBP16.15■□□□□ 0.18
UPF1-208ENST00000600012 RARSP54136 660 aaKnown RBP16.15■□□□□ 0.18
UPF1-208ENST00000600012 TNIP1Q15025 636 aa16.15■□□□□ 0.18
UPF1-208ENST00000600012 CAPNS2Q96L46 248 aa16.15■□□□□ 0.18
UPF1-208ENST00000600012 BCL2L13Q9BXK5 485 aa16.15■□□□□ 0.18
UPF1-208ENST00000600012 GTF3C3Q9Y5Q9 886 aa16.15■□□□□ 0.18
UPF1-208ENST00000600012 VAMP4O75379 141 aa16.14■□□□□ 0.17
UPF1-208ENST00000600012 NEFLP07196 543 aa16.14■□□□□ 0.17
UPF1-208ENST00000600012 HSPA8P11142 646 aaKnown RBP16.14■□□□□ 0.17
UPF1-208ENST00000600012 CST9Q5W186 159 aa16.14■□□□□ 0.17
UPF1-208ENST00000600012 PAXIP1Q6ZW49 1069 aaPredicted RBP16.14■□□□□ 0.17
UPF1-208ENST00000600012 DBF4Q9UBU7 674 aaPredicted RBP16.14■□□□□ 0.17
UPF1-208ENST00000600012 TLL2Q9Y6L7 1015 aa16.14■□□□□ 0.17
UPF1-208ENST00000600012 CACNA1FO60840 1977 aa16.14■□□□□ 0.17
UPF1-208ENST00000600012 PLIN1O60240 522 aa16.13■□□□□ 0.17
UPF1-208ENST00000600012 ANKRD13DQ6ZTN6 518 aa16.13■□□□□ 0.17
UPF1-208ENST00000600012 ISCA1Q9BUE6 129 aa16.13■□□□□ 0.17
UPF1-208ENST00000600012 RAD17O75943 681 aa16.12■□□□□ 0.17
UPF1-208ENST00000600012 SF3B3Q15393 1217 aaKnown RBP16.12■□□□□ 0.17
UPF1-208ENST00000600012 CYP4F22Q6NT55 531 aa16.12■□□□□ 0.17
UPF1-208ENST00000600012 ZC3H15Q8WU90 426 aaKnown RBP16.12■□□□□ 0.17
UPF1-208ENST00000600012 SSH1Q8WYL5 1049 aa16.12■□□□□ 0.17
UPF1-208ENST00000600012 BEGAINQ9BUH8 593 aa16.12■□□□□ 0.17
UPF1-208ENST00000600012 HYPKQ9NX55 129 aa16.12■□□□□ 0.17
UPF1-208ENST00000600012 PGAP2Q9UHJ9 254 aa16.12■□□□□ 0.17
UPF1-208ENST00000600012 GRM1Q13255 1194 aa16.11■□□□□ 0.17
UPF1-208ENST00000600012 FAM89AQ96GI7 184 aa16.11■□□□□ 0.17
UPF1-208ENST00000600012 GPR101Q96P66 508 aaPredicted RBP16.11■□□□□ 0.17
UPF1-208ENST00000600012 GLIS2Q9BZE0 524 aaPredicted RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms