RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SAGE1Q9NXZ1 904 aa13.44□□□□□ -0.26
TRIM28-210ENST00000597618 ERBB4Q15303 1308 aa13.43□□□□□ -0.26
TRIM28-210ENST00000597618 H7C1D1 291 aa13.43□□□□□ -0.26
TRIM28-210ENST00000597618 BBOX1O75936 387 aa13.43□□□□□ -0.26
TRIM28-210ENST00000597618 RAD17O75943 681 aa13.43□□□□□ -0.26
TRIM28-210ENST00000597618 HIRAP54198 1017 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-210ENST00000597618 EIF4A1P60842 406 aaKnown RBP13.43□□□□□ -0.26
TRIM28-210ENST00000597618 MPNDQ8N594 471 aa13.43□□□□□ -0.26
TRIM28-210ENST00000597618 UTP14AQ9BVJ6 771 aaKnown RBP13.43□□□□□ -0.26
TRIM28-210ENST00000597618 SLC10A5Q5PT55 438 aa13.42□□□□□ -0.26
TRIM28-210ENST00000597618 SP8Q8IXZ3 490 aa13.42□□□□□ -0.26
TRIM28-210ENST00000597618 ZIC5Q96T25 663 aa13.42□□□□□ -0.26
TRIM28-210ENST00000597618 CNOT7Q9UIV1 285 aaKnown RBP13.42□□□□□ -0.26
TRIM28-210ENST00000597618 KDM3BQ7LBC6 1761 aa13.42□□□□□ -0.26
TRIM28-210ENST00000597618 NEFMP07197 916 aa13.41□□□□□ -0.26
TRIM28-210ENST00000597618 RGMBQ6NW40 437 aa13.41□□□□□ -0.26
TRIM28-210ENST00000597618 USP48Q86UV5 1035 aa13.41□□□□□ -0.26
TRIM28-210ENST00000597618 MICALL2Q8IY33 904 aa13.41□□□□□ -0.26
TRIM28-210ENST00000597618 PPP2R1AP30153 589 aa13.4□□□□□ -0.26
TRIM28-210ENST00000597618 KRT26Q7Z3Y9 468 aa13.4□□□□□ -0.26
TRIM28-210ENST00000597618 CCER1Q8TC90 406 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-210ENST00000597618 DPF2Q92785 391 aa13.4□□□□□ -0.26
TRIM28-210ENST00000597618 CCDC102AQ96A19 550 aa13.4□□□□□ -0.26
TRIM28-210ENST00000597618 SHTN1A0MZ66 631 aa13.39□□□□□ -0.27
TRIM28-210ENST00000597618 YDJCA8MPS7 323 aa13.39□□□□□ -0.27
TRIM28-210ENST00000597618 FAM155AB1AL88 458 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-210ENST00000597618 SOX10P56693 466 aa13.39□□□□□ -0.27
TRIM28-210ENST00000597618 GRAPQ13588 217 aa13.39□□□□□ -0.27
TRIM28-210ENST00000597618 DDX46Q7L014 1031 aaKnown RBP13.39□□□□□ -0.27
TRIM28-210ENST00000597618 TMC4Q7Z404 712 aa13.39□□□□□ -0.27
TRIM28-210ENST00000597618 C2orf69Q8N8R5 385 aa13.39□□□□□ -0.27
TRIM28-210ENST00000597618 GRAPLQ8TC17 118 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-210ENST00000597618 GBA2Q9HCG7 927 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-210ENST00000597618 ZNF157P51786 506 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-210ENST00000597618 KIF23Q02241 960 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-210ENST00000597618 HSP90AB3PQ58FF7 597 aa13.38□□□□□ -0.27
TRIM28-210ENST00000597618 PRPF38BQ5VTL8 546 aaKnown RBP13.38□□□□□ -0.27
TRIM28-210ENST00000597618 DUOX1Q9NRD9 1551 aa13.37□□□□□ -0.27
TRIM28-210ENST00000597618 RPS12P25398 132 aaKnown RBP13.37□□□□□ -0.27
TRIM28-210ENST00000597618 SAMD7Q7Z3H4 446 aa13.37□□□□□ -0.27
TRIM28-210ENST00000597618 LRP10Q7Z4F1 713 aa13.37□□□□□ -0.27
TRIM28-210ENST00000597618 DCPSQ96C86 337 aaKnown RBP13.37□□□□□ -0.27
TRIM28-210ENST00000597618 RNF186Q9NXI6 227 aa13.37□□□□□ -0.27
TRIM28-210ENST00000597618 ZBTB12Q9Y330 459 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-210ENST00000597618 PSMD14O00487 310 aa13.36□□□□□ -0.27
TRIM28-210ENST00000597618 TRPA1O75762 1119 aa13.36□□□□□ -0.27
TRIM28-210ENST00000597618 HCLS1P14317 486 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-210ENST00000597618 TBC1D10BQ4KMP7 808 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-210ENST00000597618 DLK2Q6UY11 383 aa13.36□□□□□ -0.27
TRIM28-210ENST00000597618 CTU1Q7Z7A3 348 aaKnown RBP13.36□□□□□ -0.27
TRIM28-210ENST00000597618 SH3TC1Q8TE82 1336 aa13.36□□□□□ -0.27
TRIM28-210ENST00000597618 ADM5C9JUS6 153 aa13.35□□□□□ -0.27
TRIM28-210ENST00000597618 SLC10A3P09131 477 aa13.35□□□□□ -0.27
TRIM28-210ENST00000597618 PDIA6Q15084 440 aa13.35□□□□□ -0.27
TRIM28-210ENST00000597618 NFE2L2Q16236 605 aa13.35□□□□□ -0.27
TRIM28-210ENST00000597618 WASHC4Q2M389 1173 aa13.35□□□□□ -0.27
TRIM28-210ENST00000597618 NLRP10Q86W26 655 aa13.35□□□□□ -0.27
TRIM28-210ENST00000597618 REM2Q8IYK8 340 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-210ENST00000597618 THUMPD2Q9BTF0 503 aaKnown RBP13.35□□□□□ -0.27
TRIM28-210ENST00000597618 TRMT112Q9UI30 125 aaKnown RBP13.35□□□□□ -0.27
TRIM28-210ENST00000597618 ANKRD36CQ5JPF3 1778 aa13.35□□□□□ -0.27
TRIM28-210ENST00000597618 LRRC37AA6NMS7 1700 aa13.34□□□□□ -0.27
TRIM28-210ENST00000597618 EGFRP00533 1210 aa13.34□□□□□ -0.27
TRIM28-210ENST00000597618 EIF2S2P20042 333 aaKnown RBP13.34□□□□□ -0.27
TRIM28-210ENST00000597618 SULF1Q8IWU6 871 aa13.34□□□□□ -0.27
TRIM28-210ENST00000597618 DBNDD1Q9H9R9 158 aa13.34□□□□□ -0.27
TRIM28-210ENST00000597618 TSPYL4Q9UJ04 414 aa13.34□□□□□ -0.27
TRIM28-210ENST00000597618 LAMB2P55268 1798 aa13.33□□□□□ -0.28
TRIM28-210ENST00000597618 PROSER3Q2NL68 480 aa13.33□□□□□ -0.28
TRIM28-210ENST00000597618 KIF4BQ2VIQ3 1234 aa13.33□□□□□ -0.28
TRIM28-210ENST00000597618 RBM26Q5T8P6 1007 aaKnown RBP13.33□□□□□ -0.28
TRIM28-210ENST00000597618 CSRNP1Q96S65 589 aa13.33□□□□□ -0.28
TRIM28-210ENST00000597618 NSFL1CQ9UNZ2 370 aaKnown RBP13.33□□□□□ -0.28
TRIM28-210ENST00000597618 MAPK8IP3Q9UPT6 1336 aa13.33□□□□□ -0.28
TRIM28-210ENST00000597618 ECE2O60344 883 aa13.32□□□□□ -0.28
TRIM28-210ENST00000597618 TCIRG1Q13488 830 aa13.32□□□□□ -0.28
TRIM28-210ENST00000597618 PLEKHF1Q96S99 279 aa13.32□□□□□ -0.28
TRIM28-210ENST00000597618 EYA3Q99504 573 aa13.32□□□□□ -0.28
TRIM28-210ENST00000597618 PNNQ9H307 717 aaKnown RBP13.32□□□□□ -0.28
TRIM28-210ENST00000597618 GGA3Q9NZ52 723 aa13.32□□□□□ -0.28
TRIM28-210ENST00000597618 RTL9Q8NET4 1388 aa13.32□□□□□ -0.28
TRIM28-210ENST00000597618 DLG5Q8TDM6 1919 aa13.31□□□□□ -0.28
TRIM28-210ENST00000597618 C6orf229H3BNL8 230 aa13.31□□□□□ -0.28
TRIM28-210ENST00000597618 RIMBP2O15034 1052 aa13.31□□□□□ -0.28
TRIM28-210ENST00000597618 ANXA1P04083 346 aa13.31□□□□□ -0.28
TRIM28-210ENST00000597618 AIMP1Q12904 312 aaKnown RBP13.31□□□□□ -0.28
TRIM28-210ENST00000597618 PKN2Q16513 984 aaKnown RBP13.31□□□□□ -0.28
TRIM28-210ENST00000597618 COPS6Q7L5N1 327 aa13.31□□□□□ -0.28
TRIM28-210ENST00000597618 XAGE3Q8WTP9 111 aa13.31□□□□□ -0.28
TRIM28-210ENST00000597618 CDCA5Q96FF9 252 aa13.31□□□□□ -0.28
TRIM28-210ENST00000597618 HPS5Q9UPZ3 1129 aa13.31□□□□□ -0.28
TRIM28-210ENST00000597618 FKBP1BP68106 108 aa13.3□□□□□ -0.28
TRIM28-210ENST00000597618 RASAL3Q86YV0 1011 aa13.3□□□□□ -0.28
TRIM28-210ENST00000597618 BABAM1Q9NWV8 329 aa13.3□□□□□ -0.28
TRIM28-210ENST00000597618 POLLQ9UGP5 575 aa13.3□□□□□ -0.28
TRIM28-210ENST00000597618 DDX60Q8IY21 1712 aaKnown RBP13.3□□□□□ -0.28
TRIM28-210ENST00000597618 AKAP11Q9UKA4 1901 aa13.29□□□□□ -0.28
TRIM28-210ENST00000597618 GPSM2P81274 684 aa13.29□□□□□ -0.28
TRIM28-210ENST00000597618 SF3B3Q15393 1217 aaKnown RBP13.29□□□□□ -0.28
TRIM28-210ENST00000597618 DOK7Q18PE1 504 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms