RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 PRR5LQ6MZQ0 368 aa12.06□□□□□ -0.48
TRIM28-208ENST00000597172 G2E3Q7L622 706 aa12.06□□□□□ -0.48
TRIM28-208ENST00000597172 MASTLQ96GX5 879 aa12.06□□□□□ -0.48
TRIM28-208ENST00000597172 SMC4Q9NTJ3 1288 aa12.06□□□□□ -0.48
TRIM28-208ENST00000597172 ANXA1P04083 346 aa12.05□□□□□ -0.48
TRIM28-208ENST00000597172 A1BGP04217 495 aa12.05□□□□□ -0.48
TRIM28-208ENST00000597172 CYP19A1P11511 503 aaPredicted RBP12.05□□□□□ -0.48
TRIM28-208ENST00000597172 IARSP41252 1262 aaKnown RBP12.05□□□□□ -0.48
TRIM28-208ENST00000597172 RRP1P56182 461 aaKnown RBP12.05□□□□□ -0.48
TRIM28-208ENST00000597172 EIF6P56537 245 aaKnown RBP12.05□□□□□ -0.48
TRIM28-208ENST00000597172 PROSER3Q2NL68 480 aa12.05□□□□□ -0.48
TRIM28-208ENST00000597172 SYNE4Q8N205 404 aa12.05□□□□□ -0.48
TRIM28-208ENST00000597172 JDP2Q8WYK2 163 aa12.05□□□□□ -0.48
TRIM28-208ENST00000597172 TEX13AQ9BXU3 409 aaPredicted RBP12.05□□□□□ -0.48
TRIM28-208ENST00000597172 ZNF408Q9H9D4 720 aa12.05□□□□□ -0.48
TRIM28-208ENST00000597172 CHPF2Q9P2E5 772 aa12.05□□□□□ -0.48
TRIM28-208ENST00000597172 NOB1Q9ULX3 412 aaKnown RBP12.05□□□□□ -0.48
TRIM28-208ENST00000597172 AKAP11Q9UKA4 1901 aa12.05□□□□□ -0.48
TRIM28-208ENST00000597172 CACNA1SQ13698 1873 aa12.04□□□□□ -0.48
TRIM28-208ENST00000597172 COL11A2P13942 1736 aaPredicted RBP12.04□□□□□ -0.48
TRIM28-208ENST00000597172 NBPF26B4DH59 902 aa12.04□□□□□ -0.48
TRIM28-208ENST00000597172 SCNN1DP51172 638 aa12.04□□□□□ -0.48
TRIM28-208ENST00000597172 HUNKP57058 714 aa12.04□□□□□ -0.48
TRIM28-208ENST00000597172 KIF23Q02241 960 aaPredicted RBP12.04□□□□□ -0.48
TRIM28-208ENST00000597172 NBPF10Q6P3W6 841 aaKnown RBP12.04□□□□□ -0.48
TRIM28-208ENST00000597172 LRP10Q7Z4F1 713 aa12.04□□□□□ -0.48
TRIM28-208ENST00000597172 RTKN2Q8IZC4 609 aa12.04□□□□□ -0.48
TRIM28-208ENST00000597172 CHMP4AQ9BY43 222 aa12.04□□□□□ -0.48
TRIM28-208ENST00000597172 GLIS2Q9BZE0 524 aaPredicted RBP12.04□□□□□ -0.48
TRIM28-208ENST00000597172 COL15A1P39059 1388 aa12.04□□□□□ -0.48
TRIM28-208ENST00000597172 PIP4K2AP48426 406 aaPredicted RBP12.03□□□□□ -0.48
TRIM28-208ENST00000597172 FRAT1Q92837 279 aaPredicted RBP12.03□□□□□ -0.48
TRIM28-208ENST00000597172 STK31Q9BXU1 1019 aa12.03□□□□□ -0.48
TRIM28-208ENST00000597172 PHAXQ9H814 394 aaKnown RBP12.03□□□□□ -0.48
TRIM28-208ENST00000597172 DBF4Q9UBU7 674 aaPredicted RBP12.03□□□□□ -0.48
TRIM28-208ENST00000597172 HDAC9Q9UKV0 1011 aa12.03□□□□□ -0.48
TRIM28-208ENST00000597172 TNNQ9UQP3 1299 aa12.03□□□□□ -0.48
TRIM28-208ENST00000597172 COL6A3P12111 3177 aa12.03□□□□□ -0.48
TRIM28-208ENST00000597172 FAM155AB1AL88 458 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-208ENST00000597172 STARD3NLO95772 234 aa12.02□□□□□ -0.49
TRIM28-208ENST00000597172 MNX1P50219 401 aaPredicted RBP12.02□□□□□ -0.49
TRIM28-208ENST00000597172 C20orf194Q5TEA3 1177 aa12.02□□□□□ -0.49
TRIM28-208ENST00000597172 TBC1D9BQ66K14 1250 aa12.02□□□□□ -0.49
TRIM28-208ENST00000597172 ARHGAP45Q92619 1136 aa12.02□□□□□ -0.49
TRIM28-208ENST00000597172 TJP1Q07157 1748 aa12.01□□□□□ -0.49
TRIM28-208ENST00000597172 NPHP1O15259 732 aa12.01□□□□□ -0.49
TRIM28-208ENST00000597172 RGMBQ6NW40 437 aa12.01□□□□□ -0.49
TRIM28-208ENST00000597172 OLFM4Q6UX06 510 aa12.01□□□□□ -0.49
TRIM28-208ENST00000597172 CCDC102AQ96A19 550 aa12.01□□□□□ -0.49
TRIM28-208ENST00000597172 ADARB2Q9NS39 739 aaKnown RBP12.01□□□□□ -0.49
TRIM28-208ENST00000597172 HYPKQ9NX55 129 aa12.01□□□□□ -0.49
TRIM28-208ENST00000597172 ZBTB1Q9Y2K1 713 aa12.01□□□□□ -0.49
TRIM28-208ENST00000597172 ERBB4Q15303 1308 aa12.01□□□□□ -0.49
TRIM28-208ENST00000597172 IPO8O15397 1037 aaKnown RBP12□□□□□ -0.49
TRIM28-208ENST00000597172 RLBP1P12271 317 aa12□□□□□ -0.49
TRIM28-208ENST00000597172 TRIM27P14373 513 aa12□□□□□ -0.49
TRIM28-208ENST00000597172 MYL6BP14649 208 aa12□□□□□ -0.49
TRIM28-208ENST00000597172 ST5P78524 1137 aa12□□□□□ -0.49
TRIM28-208ENST00000597172 FLIIQ13045 1269 aa12□□□□□ -0.49
TRIM28-208ENST00000597172 ZKSCAN2Q63HK3 967 aa12□□□□□ -0.49
TRIM28-208ENST00000597172 FBXO46Q6PJ61 603 aaPredicted RBP12□□□□□ -0.49
TRIM28-208ENST00000597172 ATF7IPQ6VMQ6 1270 aa12□□□□□ -0.49
TRIM28-208ENST00000597172 CNBD1Q8NA66 436 aa12□□□□□ -0.49
TRIM28-208ENST00000597172 CSRNP1Q96S65 589 aa12□□□□□ -0.49
TRIM28-208ENST00000597172 RANBP2P49792 3224 aaKnown RBP11.99□□□□□ -0.49
TRIM28-208ENST00000597172 CANXP27824 592 aaKnown RBP11.99□□□□□ -0.49
TRIM28-208ENST00000597172 IRX6P78412 446 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-208ENST00000597172 COPS6Q7L5N1 327 aa11.99□□□□□ -0.49
TRIM28-208ENST00000597172 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-208ENST00000597172 XAGE3Q8WTP9 111 aa11.99□□□□□ -0.49
TRIM28-208ENST00000597172 KIF16BQ96L93 1317 aa11.99□□□□□ -0.49
TRIM28-208ENST00000597172 ARFGEF2Q9Y6D5 1785 aa11.99□□□□□ -0.49
TRIM28-208ENST00000597172 PTPRCP08575 1304 aa11.98□□□□□ -0.49
TRIM28-208ENST00000597172 A0A087WZG4 1122 aa11.98□□□□□ -0.49
TRIM28-208ENST00000597172 NPR1P16066 1061 aa11.98□□□□□ -0.49
TRIM28-208ENST00000597172 EIF5P55010 431 aaKnown RBP11.98□□□□□ -0.49
TRIM28-208ENST00000597172 PDE3AQ14432 1141 aa11.98□□□□□ -0.49
TRIM28-208ENST00000597172 CDC37L1Q7L3B6 337 aa11.98□□□□□ -0.49
TRIM28-208ENST00000597172 PANK1Q8TE04 598 aa11.98□□□□□ -0.49
TRIM28-208ENST00000597172 CLUAP1Q96AJ1 413 aa11.98□□□□□ -0.49
TRIM28-208ENST00000597172 PGAP2Q9UHJ9 254 aa11.98□□□□□ -0.49
TRIM28-208ENST00000597172 LAMB4A4D0S4 1761 aa11.97□□□□□ -0.49
TRIM28-208ENST00000597172 POTEFA5A3E0 1075 aa11.97□□□□□ -0.49
TRIM28-208ENST00000597172 F6X3S4 739 aa11.97□□□□□ -0.49
TRIM28-208ENST00000597172 ZNF157P51786 506 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-208ENST00000597172 AIMP1Q12904 312 aaKnown RBP11.97□□□□□ -0.49
TRIM28-208ENST00000597172 FKBP5Q13451 457 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-208ENST00000597172 TTLL7Q6ZT98 887 aa11.97□□□□□ -0.49
TRIM28-208ENST00000597172 DZIP1LQ8IYY4 767 aaKnown RBP11.97□□□□□ -0.49
TRIM28-208ENST00000597172 ZNF296Q8WUU4 475 aaPredicted RBP11.97□□□□□ -0.49
TRIM28-208ENST00000597172 SETDB2Q96T68 719 aa11.97□□□□□ -0.49
TRIM28-208ENST00000597172 API5Q9BZZ5 524 aaKnown RBP11.97□□□□□ -0.49
TRIM28-208ENST00000597172 GPRC5DQ9NZD1 345 aa11.97□□□□□ -0.49
TRIM28-208ENST00000597172 PI4KAP2A4QPH2 592 aa11.96□□□□□ -0.49
TRIM28-208ENST00000597172 IL6STP40189 918 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-208ENST00000597172 KSR2Q6VAB6 950 aa11.96□□□□□ -0.49
TRIM28-208ENST00000597172 ANKRD13DQ6ZTN6 518 aa11.96□□□□□ -0.49
TRIM28-208ENST00000597172 PI4KAP1Q8N8J0 262 aa11.96□□□□□ -0.49
TRIM28-208ENST00000597172 ZC3H15Q8WU90 426 aaKnown RBP11.96□□□□□ -0.49
TRIM28-208ENST00000597172 PSMD1Q99460 953 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms