RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TRIM22Q8IYM9 498 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 SUPT20HQ8NEM7 779 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 NUP133Q8WUM0 1156 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 RNF41Q9H4P4 317 aaPredicted RBP11.67□□□□□ -0.54
LIG3-216ENST00000593099 SPATA31A1Q5TZJ5 1347 aa11.67□□□□□ -0.54
LIG3-216ENST00000593099 PCDHB15Q9Y5E8 787 aa11.66□□□□□ -0.54
LIG3-216ENST00000593099 MYO3AQ8NEV4 1616 aa11.66□□□□□ -0.54
LIG3-216ENST00000593099 F8W031 263 aaPredicted RBP11.66□□□□□ -0.54
LIG3-216ENST00000593099 FOSBP53539 338 aa11.66□□□□□ -0.54
LIG3-216ENST00000593099 DPP8Q6V1X1 898 aaPredicted RBP11.66□□□□□ -0.54
LIG3-216ENST00000593099 CRNKL1Q9BZJ0 848 aaKnown RBP11.66□□□□□ -0.54
LIG3-216ENST00000593099 NCAPD2Q15021 1401 aa11.66□□□□□ -0.54
LIG3-216ENST00000593099 NEURL1BA8MQ27 555 aa11.66□□□□□ -0.54
LIG3-216ENST00000593099 FOXD4L6Q3SYB3 417 aaPredicted RBP11.66□□□□□ -0.54
LIG3-216ENST00000593099 FOXD4L3Q6VB84 417 aaPredicted RBP11.66□□□□□ -0.54
LIG3-216ENST00000593099 CLEC11AQ9Y240 323 aa11.66□□□□□ -0.54
LIG3-216ENST00000593099 CYP7A1P22680 504 aa11.66□□□□□ -0.54
LIG3-216ENST00000593099 GIGYF2Q6Y7W6 1299 aaKnown RBP11.66□□□□□ -0.54
LIG3-216ENST00000593099 PAXIP1Q6ZW49 1069 aaPredicted RBP11.66□□□□□ -0.54
LIG3-216ENST00000593099 JAKMIP1Q96N16 626 aaKnown RBP11.66□□□□□ -0.54
LIG3-216ENST00000593099 TSHZ2Q9NRE2 1034 aa11.66□□□□□ -0.54
LIG3-216ENST00000593099 ZBTB40Q9NUA8 1239 aa11.66□□□□□ -0.54
LIG3-216ENST00000593099 NAA16Q6N069 864 aaPredicted RBP11.65□□□□□ -0.54
LIG3-216ENST00000593099 RPS8P62241 208 aaKnown RBP11.65□□□□□ -0.54
LIG3-216ENST00000593099 CCDC43Q96MW1 224 aaKnown RBP11.65□□□□□ -0.54
LIG3-216ENST00000593099 NEURL4Q96JN8 1562 aa11.65□□□□□ -0.54
LIG3-216ENST00000593099 TFCP2Q12800 502 aa11.65□□□□□ -0.54
LIG3-216ENST00000593099 BARGINQ6ZT62 677 aa11.65□□□□□ -0.54
LIG3-216ENST00000593099 ADGRB1O14514 1584 aa11.65□□□□□ -0.55
LIG3-216ENST00000593099 ZNF213O14771 459 aa11.65□□□□□ -0.55
LIG3-216ENST00000593099 PDCP20941 246 aa11.65□□□□□ -0.55
LIG3-216ENST00000593099 LMOD1P29536 600 aaPredicted RBP11.65□□□□□ -0.55
LIG3-216ENST00000593099 C2CD5Q86YS7 1000 aa11.65□□□□□ -0.55
LIG3-216ENST00000593099 LARGE2Q8N3Y3 721 aa11.65□□□□□ -0.55
LIG3-216ENST00000593099 UBE2Q2Q8WVN8 375 aa11.65□□□□□ -0.55
LIG3-216ENST00000593099 CNKSR1Q969H4 720 aa11.65□□□□□ -0.55
LIG3-216ENST00000593099 SUCLG2Q96I99 432 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 DCTPP1Q9H773 170 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 ZBTB7BO15156 539 aaPredicted RBP11.64□□□□□ -0.55
LIG3-216ENST00000593099 RPS6KA4O75676 772 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 PCCAP05165 728 aaPredicted RBP11.64□□□□□ -0.55
LIG3-216ENST00000593099 IQCA1Q86XH1 822 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 BCS1LQ9Y276 419 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 SPATA31A5Q5VU36 1347 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 SPATA31A7Q8IWB4 1347 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 GPR162Q16538 588 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 SSH2Q76I76 1423 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 ZBTB38Q8NAP3 1195 aaPredicted RBP11.64□□□□□ -0.55
LIG3-216ENST00000593099 CABP5Q9NP86 173 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 ATG3Q9NT62 314 aa11.64□□□□□ -0.55
LIG3-216ENST00000593099 RANBP6O60518 1105 aaKnown RBP11.63□□□□□ -0.55
LIG3-216ENST00000593099 KDM4AO75164 1064 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 NUCB2P80303 420 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 PUM3Q15397 648 aaKnown RBP11.63□□□□□ -0.55
LIG3-216ENST00000593099 SLC27A3Q5K4L6 730 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 SOGA3Q5TF21 947 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 NBPF7P0C2Y1 421 aaPredicted RBP11.63□□□□□ -0.55
LIG3-216ENST00000593099 HIBADHP31937 336 aaKnown RBP11.63□□□□□ -0.55
LIG3-216ENST00000593099 FBXO41Q8TF61 875 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 IGHDP01880 384 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 SERPINB2P05120 415 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 EIF6P56537 245 aaKnown RBP11.63□□□□□ -0.55
LIG3-216ENST00000593099 NUCB1Q02818 461 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 DENND2AQ9ULE3 1009 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 KIAA1210Q9ULL0 1709 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 PLCG2P16885 1265 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 TPM4P67936 248 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 TSHZ3Q63HK5 1081 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 PRPF40BQ6NWY9 871 aaKnown RBP11.63□□□□□ -0.55
LIG3-216ENST00000593099 MPNDQ8N594 471 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 PDRG1Q9NUG6 133 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 KDRP35968 1356 aa11.63□□□□□ -0.55
LIG3-216ENST00000593099 ERVV-1B6SEH8 477 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 CDKL5O76039 1030 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 PDE1AP54750 535 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 C16orf71Q8IYS4 520 aaPredicted RBP11.62□□□□□ -0.55
LIG3-216ENST00000593099 PNPLA6Q8IY17 1366 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 LDHBP07195 334 aaKnown RBP11.62□□□□□ -0.55
LIG3-216ENST00000593099 CTSWP56202 376 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 PDE4BQ07343 736 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 TXNRD1Q16881 649 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 BMP2KLQ5H9B9 411 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 CCDC47Q96A33 483 aaKnown RBP11.62□□□□□ -0.55
LIG3-216ENST00000593099 KIF13AQ9H1H9 1805 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 PROSER3Q2NL68 480 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 RBM26Q5T8P6 1007 aaKnown RBP11.62□□□□□ -0.55
LIG3-216ENST00000593099 SLC9C2Q5TAH2 1124 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 GJA3Q9Y6H8 435 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 NF2P35240 595 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 ZNF594Q96JF6 807 aaPredicted RBP11.62□□□□□ -0.55
LIG3-216ENST00000593099 CHMP5Q9NZZ3 219 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 TTC41PQ6P2S7 1318 aa11.62□□□□□ -0.55
LIG3-216ENST00000593099 KCNQ2O43526 872 aa11.61□□□□□ -0.55
LIG3-216ENST00000593099 ZNF853P0CG23 659 aa11.61□□□□□ -0.55
LIG3-216ENST00000593099 TTC22Q5TAA0 569 aa11.61□□□□□ -0.55
LIG3-216ENST00000593099 FEZ1Q99689 392 aa11.61□□□□□ -0.55
LIG3-216ENST00000593099 PAG1Q9NWQ8 432 aa11.61□□□□□ -0.55
LIG3-216ENST00000593099 A0A1B0GUL7 405 aa11.61□□□□□ -0.55
LIG3-216ENST00000593099 ADRA2BP18089 450 aa11.61□□□□□ -0.55
LIG3-216ENST00000593099 STK3Q13188 491 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms