RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 JDP2Q8WYK2 163 aa13.53□□□□□ -0.24
LIG3-212ENST00000590181 RPGRQ92834 1020 aaKnown RBP13.53□□□□□ -0.24
LIG3-212ENST00000590181 PSMD1Q99460 953 aa13.53□□□□□ -0.24
LIG3-212ENST00000590181 CHPF2Q9P2E5 772 aa13.53□□□□□ -0.24
LIG3-212ENST00000590181 GJA3Q9Y6H8 435 aa13.53□□□□□ -0.24
LIG3-212ENST00000590181 TNRC18O15417 2968 aaPredicted RBP13.53□□□□□ -0.24
LIG3-212ENST00000590181 GOLGA2Q08379 1002 aa13.52□□□□□ -0.25
LIG3-212ENST00000590181 UBN2Q6ZU65 1347 aa13.51□□□□□ -0.25
LIG3-212ENST00000590181 SH3TC1Q8TE82 1336 aa13.51□□□□□ -0.25
LIG3-212ENST00000590181 BBOX1O75936 387 aa13.51□□□□□ -0.25
LIG3-212ENST00000590181 EIF6P56537 245 aaKnown RBP13.51□□□□□ -0.25
LIG3-212ENST00000590181 AIMP1Q12904 312 aaKnown RBP13.51□□□□□ -0.25
LIG3-212ENST00000590181 GRM1Q13255 1194 aa13.51□□□□□ -0.25
LIG3-212ENST00000590181 PROSER3Q2NL68 480 aa13.51□□□□□ -0.25
LIG3-212ENST00000590181 NLRP10Q86W26 655 aa13.51□□□□□ -0.25
LIG3-212ENST00000590181 CAPNS2Q96L46 248 aa13.51□□□□□ -0.25
LIG3-212ENST00000590181 STK31Q9BXU1 1019 aa13.51□□□□□ -0.25
LIG3-212ENST00000590181 GPTP24298 496 aa13.5□□□□□ -0.25
LIG3-212ENST00000590181 TRMT112Q9UI30 125 aaKnown RBP13.5□□□□□ -0.25
LIG3-212ENST00000590181 ECE1P42892 770 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 SCNN1DP51172 638 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 FMR1Q06787 632 aaKnown RBP eCLIP13.49□□□□□ -0.255e-6■■■■□ 22.9
LIG3-212ENST00000590181 CCDC184Q52MB2 194 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 CYP4F22Q6NT55 531 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 RIC3Q7Z5B4 369 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 NUTM1Q86Y26 1132 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 CCDC191Q8NCU4 936 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 NECTIN2Q92692 538 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 ISCA1Q9BUE6 129 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 BEGAINQ9BUH8 593 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 MYH16Q9H6N6 1097 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 CASP8AP2Q9UKL3 1982 aa13.49□□□□□ -0.25
LIG3-212ENST00000590181 LRRC37AA6NMS7 1700 aa13.48□□□□□ -0.25
LIG3-212ENST00000590181 DDX60Q8IY21 1712 aaKnown RBP13.48□□□□□ -0.25
LIG3-212ENST00000590181 KRT24Q2M2I5 525 aa13.48□□□□□ -0.25
LIG3-212ENST00000590181 SLC51AQ86UW1 340 aa13.48□□□□□ -0.25
LIG3-212ENST00000590181 LARGE2Q8N3Y3 721 aa13.48□□□□□ -0.25
LIG3-212ENST00000590181 SUPT20HQ8NEM7 779 aa13.48□□□□□ -0.25
LIG3-212ENST00000590181 CCDC85CA6NKD9 419 aa13.47□□□□□ -0.25
LIG3-212ENST00000590181 TRAF5O00463 557 aa13.47□□□□□ -0.25
LIG3-212ENST00000590181 PPEF1O14829 653 aaPredicted RBP13.47□□□□□ -0.25
LIG3-212ENST00000590181 ANXA1P04083 346 aa13.47□□□□□ -0.25
LIG3-212ENST00000590181 EPS15P42566 896 aa13.47□□□□□ -0.25
LIG3-212ENST00000590181 DDX46Q7L014 1031 aaKnown RBP13.47□□□□□ -0.25
LIG3-212ENST00000590181 C8orf58Q8NAV2 365 aa13.47□□□□□ -0.25
LIG3-212ENST00000590181 NEXNQ0ZGT2 675 aa13.46□□□□□ -0.25
LIG3-212ENST00000590181 SF3B3Q15393 1217 aaKnown RBP13.46□□□□□ -0.25
LIG3-212ENST00000590181 TWISTNBQ3B726 338 aaPredicted RBP13.46□□□□□ -0.25
LIG3-212ENST00000590181 USP50Q70EL3 339 aaPredicted RBP13.46□□□□□ -0.25
LIG3-212ENST00000590181 SP8Q8IXZ3 490 aa13.46□□□□□ -0.25
LIG3-212ENST00000590181 NIM1KQ8IY84 436 aa13.46□□□□□ -0.25
LIG3-212ENST00000590181 ZBTB38Q8NAP3 1195 aaPredicted RBP13.46□□□□□ -0.25
LIG3-212ENST00000590181 GPR101Q96P66 508 aaPredicted RBP13.46□□□□□ -0.25
LIG3-212ENST00000590181 TSKSQ9UJT2 592 aa13.46□□□□□ -0.25
LIG3-212ENST00000590181 ATP6V0A2Q9Y487 856 aa13.46□□□□□ -0.25
LIG3-212ENST00000590181 TLL2Q9Y6L7 1015 aa13.46□□□□□ -0.25
LIG3-212ENST00000590181 CCER2I3L3R5 266 aa13.45□□□□□ -0.26
LIG3-212ENST00000590181 AOC2O75106 756 aa13.45□□□□□ -0.26
LIG3-212ENST00000590181 MLLT1Q03111 559 aaPredicted RBP13.45□□□□□ -0.26
LIG3-212ENST00000590181 KSR2Q6VAB6 950 aa13.45□□□□□ -0.26
LIG3-212ENST00000590181 METTL22Q9BUU2 404 aaPredicted RBP13.45□□□□□ -0.26
LIG3-212ENST00000590181 TAF1P21675 1872 aa13.44□□□□□ -0.26
LIG3-212ENST00000590181 ELL2O00472 640 aaPredicted RBP13.44□□□□□ -0.26
LIG3-212ENST00000590181 TCERG1O14776 1098 aaKnown RBP13.44□□□□□ -0.26
LIG3-212ENST00000590181 PPIP5K2O43314 1243 aa13.44□□□□□ -0.26
LIG3-212ENST00000590181 PCCAP05165 728 aaPredicted RBP13.44□□□□□ -0.26
LIG3-212ENST00000590181 FAM9BQ8IZU0 186 aa13.44□□□□□ -0.26
LIG3-212ENST00000590181 ZNF428Q96B54 188 aa13.44□□□□□ -0.26
LIG3-212ENST00000590181 DUOX1Q9NRD9 1551 aa13.44□□□□□ -0.26
LIG3-212ENST00000590181 SLC4A2P04920 1241 aa13.43□□□□□ -0.26
LIG3-212ENST00000590181 GRAPQ13588 217 aa13.43□□□□□ -0.26
LIG3-212ENST00000590181 AOC3Q16853 763 aa13.43□□□□□ -0.26
LIG3-212ENST00000590181 CST9Q5W186 159 aa13.43□□□□□ -0.26
LIG3-212ENST00000590181 GRAPLQ8TC17 118 aaPredicted RBP13.43□□□□□ -0.26
LIG3-212ENST00000590181 RTFDC1Q9BY42 306 aaPredicted RBP13.43□□□□□ -0.26
LIG3-212ENST00000590181 ADARB2Q9NS39 739 aaKnown RBP13.43□□□□□ -0.26
LIG3-212ENST00000590181 CWC25Q9NXE8 425 aaPredicted RBP13.43□□□□□ -0.26
LIG3-212ENST00000590181 PDE4DIPQ5VU43 2346 aa13.42□□□□□ -0.26
LIG3-212ENST00000590181 C3orf67Q6ZVT6 689 aa13.42□□□□□ -0.26
LIG3-212ENST00000590181 TSR2Q969E8 191 aaKnown RBP13.42□□□□□ -0.26
LIG3-212ENST00000590181 PHAXQ9H814 394 aaKnown RBP13.42□□□□□ -0.26
LIG3-212ENST00000590181 GPRC5DQ9NZD1 345 aa13.42□□□□□ -0.26
LIG3-212ENST00000590181 CDHR2Q9BYE9 1310 aa13.41□□□□□ -0.26
LIG3-212ENST00000590181 FANCIQ9NVI1 1328 aa13.41□□□□□ -0.26
LIG3-212ENST00000590181 IRS4O14654 1257 aaPredicted RBP13.41□□□□□ -0.26
LIG3-212ENST00000590181 VAMP4O75379 141 aa13.41□□□□□ -0.26
LIG3-212ENST00000590181 CELF2O95319 508 aaKnown RBP13.41□□□□□ -0.26
LIG3-212ENST00000590181 CCDC152Q4G0S7 254 aa13.41□□□□□ -0.26
LIG3-212ENST00000590181 TSPYL6Q8N831 410 aa13.41□□□□□ -0.26
LIG3-212ENST00000590181 GLIS2Q9BZE0 524 aaPredicted RBP13.41□□□□□ -0.26
LIG3-212ENST00000590181 AKAP11Q9UKA4 1901 aa13.41□□□□□ -0.26
LIG3-212ENST00000590181 ABCC4O15439 1325 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 PI4KAP2A4QPH2 592 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 ATP5J2-PTCD1G3V325 749 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 CA12O43570 354 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 PDE8AO60658 829 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 HCLS1P14317 486 aaPredicted RBP13.4□□□□□ -0.26
LIG3-212ENST00000590181 MAP2K2P36507 400 aa13.4□□□□□ -0.26
LIG3-212ENST00000590181 GMPSP49915 693 aaPredicted RBP13.4□□□□□ -0.26
LIG3-212ENST00000590181 SAPCD2Q86UD0 394 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms