RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 RTCBQ9Y3I0 505 aaKnown RBP12.12□□□□□ -0.47
VPS25-202ENST00000589219 YBX3P16989 372 aaKnown RBP eCLIP12.11□□□□□ -0.471e-6■■□□□ 11.7
VPS25-202ENST00000589219 CWF19L2Q2TBE0 894 aaKnown RBP12.11□□□□□ -0.47
VPS25-202ENST00000589219 TRAPPC3LQ5T215 181 aa12.11□□□□□ -0.47
VPS25-202ENST00000589219 RC3H1Q5TC82 1133 aaKnown RBP12.11□□□□□ -0.47
VPS25-202ENST00000589219 AMIGO3Q86WK7 504 aa12.11□□□□□ -0.47
VPS25-202ENST00000589219 IGKV5-2P06315 115 aa12.1□□□□□ -0.47
VPS25-202ENST00000589219 MCM4P33991 863 aa12.1□□□□□ -0.47
VPS25-202ENST00000589219 MCM2P49736 904 aa12.1□□□□□ -0.47
VPS25-202ENST00000589219 AIMP1Q12904 312 aaKnown RBP12.1□□□□□ -0.47
VPS25-202ENST00000589219 GCKRQ14397 625 aa12.1□□□□□ -0.47
VPS25-202ENST00000589219 TSHZ3Q63HK5 1081 aa12.1□□□□□ -0.47
VPS25-202ENST00000589219 COPS6Q7L5N1 327 aa12.1□□□□□ -0.47
VPS25-202ENST00000589219 RILPL2Q969X0 211 aa12.1□□□□□ -0.47
VPS25-202ENST00000589219 MYD88Q99836 296 aa12.1□□□□□ -0.47
VPS25-202ENST00000589219 COL5A3P25940 1745 aaPredicted RBP12.1□□□□□ -0.47
VPS25-202ENST00000589219 CD2BP2O95400 341 aaKnown RBP12.09□□□□□ -0.47
VPS25-202ENST00000589219 MYL6BP14649 208 aa12.09□□□□□ -0.47
VPS25-202ENST00000589219 RAB3GAP1Q15042 981 aa12.09□□□□□ -0.47
VPS25-202ENST00000589219 ANKRD13DQ6ZTN6 518 aa12.09□□□□□ -0.47
VPS25-202ENST00000589219 SMIM5Q71RC9 77 aa12.09□□□□□ -0.47
VPS25-202ENST00000589219 NUTM1Q86Y26 1132 aa12.09□□□□□ -0.47
VPS25-202ENST00000589219 NLGN1Q8N2Q7 840 aa12.09□□□□□ -0.47
VPS25-202ENST00000589219 SPRYD3Q8NCJ5 442 aa12.09□□□□□ -0.47
VPS25-202ENST00000589219 PLBD2Q8NHP8 589 aa12.09□□□□□ -0.47
VPS25-202ENST00000589219 GBP4Q96PP9 640 aa12.09□□□□□ -0.47
VPS25-202ENST00000589219 BICC1Q9H694 974 aaKnown RBP12.09□□□□□ -0.47
VPS25-202ENST00000589219 AFDNP55196 1824 aaKnown RBP12.09□□□□□ -0.47
VPS25-202ENST00000589219 CNTNAP4Q9C0A0 1308 aa12.09□□□□□ -0.47
VPS25-202ENST00000589219 AK9Q5TCS8 1911 aa12.08□□□□□ -0.48
VPS25-202ENST00000589219 IFIT2P09913 472 aaKnown RBP12.08□□□□□ -0.48
VPS25-202ENST00000589219 RFC4P35249 363 aa12.08□□□□□ -0.48
VPS25-202ENST00000589219 G3BP1Q13283 466 aaKnown RBP eCLIP12.08□□□□□ -0.48
VPS25-202ENST00000589219 ECHDC1Q9NTX5 307 aa12.08□□□□□ -0.48
VPS25-202ENST00000589219 PTCD1O75127 700 aaKnown RBP12.07□□□□□ -0.48
VPS25-202ENST00000589219 RPS6KA4O75676 772 aa12.07□□□□□ -0.48
VPS25-202ENST00000589219 MMP10P09238 476 aa12.07□□□□□ -0.48
VPS25-202ENST00000589219 C1QTNF8P60827 252 aa12.07□□□□□ -0.48
VPS25-202ENST00000589219 RABL6Q3YEC7 729 aaPredicted RBP12.07□□□□□ -0.48
VPS25-202ENST00000589219 RUFY2Q8WXA3 655 aa12.07□□□□□ -0.48
VPS25-202ENST00000589219 ARHGEF1Q92888 912 aaKnown RBP12.07□□□□□ -0.48
VPS25-202ENST00000589219 KAZALD1Q96I82 304 aa12.07□□□□□ -0.48
VPS25-202ENST00000589219 SLC4A9Q96Q91 983 aa12.07□□□□□ -0.48
VPS25-202ENST00000589219 CWC22Q9HCG8 908 aaKnown RBP12.07□□□□□ -0.48
VPS25-202ENST00000589219 ANO2Q9NQ90 1003 aa12.07□□□□□ -0.48
VPS25-202ENST00000589219 USP16Q9Y5T5 823 aa12.07□□□□□ -0.48
VPS25-202ENST00000589219 RAD50Q92878 1312 aa12.07□□□□□ -0.48
VPS25-202ENST00000589219 KIF13BQ9NQT8 1826 aa12.07□□□□□ -0.48
VPS25-202ENST00000589219 RFX7Q2KHR2 1363 aa12.06□□□□□ -0.48
VPS25-202ENST00000589219 TJP1Q07157 1748 aa12.06□□□□□ -0.48
VPS25-202ENST00000589219 HIP1O00291 1037 aa12.06□□□□□ -0.48
VPS25-202ENST00000589219 SGSM2O43147 1006 aa12.06□□□□□ -0.48
VPS25-202ENST00000589219 NUCB2P80303 420 aa12.06□□□□□ -0.48
VPS25-202ENST00000589219 MYH14Q7Z406 1995 aaKnown RBP12.06□□□□□ -0.48
VPS25-202ENST00000589219 CICQ96RK0 1608 aaPredicted RBP12.05□□□□□ -0.48
VPS25-202ENST00000589219 TGFB2P61812 414 aa12.05□□□□□ -0.48
VPS25-202ENST00000589219 AACSQ86V21 672 aa12.05□□□□□ -0.48
VPS25-202ENST00000589219 EVI5LQ96CN4 794 aa12.05□□□□□ -0.48
VPS25-202ENST00000589219 COPRSQ9NQ92 184 aa12.05□□□□□ -0.48
VPS25-202ENST00000589219 CCDC87Q9NVE4 849 aa12.05□□□□□ -0.48
VPS25-202ENST00000589219 PA2G4Q9UQ80 394 aaKnown RBP12.05□□□□□ -0.48
VPS25-202ENST00000589219 PARP3Q9Y6F1 533 aa12.05□□□□□ -0.48
VPS25-202ENST00000589219 C4AP0C0L4 1744 aa12.04□□□□□ -0.48
VPS25-202ENST00000589219 HSPA4P34932 840 aa12.04□□□□□ -0.48
VPS25-202ENST00000589219 CRKLP46109 303 aaKnown RBP12.04□□□□□ -0.48
VPS25-202ENST00000589219 CLEC17AQ6ZS10 378 aa12.04□□□□□ -0.48
VPS25-202ENST00000589219 VSIG10Q8N0Z9 540 aa12.04□□□□□ -0.48
VPS25-202ENST00000589219 TNPO1Q92973 898 aaKnown RBP12.04□□□□□ -0.48
VPS25-202ENST00000589219 TEX13AQ9BXU3 409 aaPredicted RBP12.04□□□□□ -0.48
VPS25-202ENST00000589219 DIAPH3Q9NSV4 1193 aa12.04□□□□□ -0.48
VPS25-202ENST00000589219 GOLGA6L22H0YM25 854 aa12.03□□□□□ -0.48
VPS25-202ENST00000589219 SASH1O94885 1247 aa12.03□□□□□ -0.48
VPS25-202ENST00000589219 GYS1P13807 737 aa12.03□□□□□ -0.48
VPS25-202ENST00000589219 CASP7P55210 303 aa12.03□□□□□ -0.48
VPS25-202ENST00000589219 KIAA1211Q6ZU35 1233 aa12.03□□□□□ -0.48
VPS25-202ENST00000589219 CWC25Q9NXE8 425 aaPredicted RBP12.03□□□□□ -0.48
VPS25-202ENST00000589219 NBPF26B4DH59 902 aa12.02□□□□□ -0.49
VPS25-202ENST00000589219 RFX5P48382 616 aaPredicted RBP12.02□□□□□ -0.49
VPS25-202ENST00000589219 SKOR2Q2VWA4 1001 aaPredicted RBP12.02□□□□□ -0.49
VPS25-202ENST00000589219 NBPF10Q6P3W6 841 aaKnown RBP12.02□□□□□ -0.49
VPS25-202ENST00000589219 UBE3BQ7Z3V4 1068 aa12.02□□□□□ -0.49
VPS25-202ENST00000589219 NBPF15Q8N660 670 aa12.02□□□□□ -0.49
VPS25-202ENST00000589219 LSG1Q9H089 658 aaKnown RBP12.02□□□□□ -0.49
VPS25-202ENST00000589219 GPBP1L1Q9HC44 474 aaPredicted RBP12.02□□□□□ -0.49
VPS25-202ENST00000589219 A0A087WZG4 1122 aa12.01□□□□□ -0.49
VPS25-202ENST00000589219 H7C1W4 665 aa12.01□□□□□ -0.49
VPS25-202ENST00000589219 CYP2E1P05181 493 aaPredicted RBP12.01□□□□□ -0.49
VPS25-202ENST00000589219 NEK4P51957 841 aa12.01□□□□□ -0.49
VPS25-202ENST00000589219 CUL4AQ13619 759 aa12.01□□□□□ -0.49
VPS25-202ENST00000589219 L1TD1Q5T7N2 865 aaKnown RBP12.01□□□□□ -0.49
VPS25-202ENST00000589219 SAMD1Q6SPF0 538 aaPredicted RBP12.01□□□□□ -0.49
VPS25-202ENST00000589219 CCDC191Q8NCU4 936 aa12.01□□□□□ -0.49
VPS25-202ENST00000589219 INTS4Q96HW7 963 aaKnown RBP12.01□□□□□ -0.49
VPS25-202ENST00000589219 C10orf71Q711Q0 1435 aa12.01□□□□□ -0.49
VPS25-202ENST00000589219 TRAK2O60296 914 aa12□□□□□ -0.49
VPS25-202ENST00000589219 ZPR1O75312 459 aa12□□□□□ -0.49
VPS25-202ENST00000589219 MAP4K4O95819 1239 aaPredicted RBP12□□□□□ -0.49
VPS25-202ENST00000589219 PTPN12Q05209 780 aaKnown RBP12□□□□□ -0.49
VPS25-202ENST00000589219 EPHA10Q5JZY3 1008 aa12□□□□□ -0.49
VPS25-202ENST00000589219 TICAM2Q86XR7 235 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms