RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 AKAP11Q9UKA4 1901 aa5.62□□□□□ -1.51
LIG3-211ENST00000588713 SLC10A3P09131 477 aa5.61□□□□□ -1.51
LIG3-211ENST00000588713 IARSP41252 1262 aaKnown RBP5.61□□□□□ -1.51
LIG3-211ENST00000588713 CRKLP46109 303 aaKnown RBP5.61□□□□□ -1.51
LIG3-211ENST00000588713 AMPHP49418 695 aa5.61□□□□□ -1.51
LIG3-211ENST00000588713 LSM11P83369 360 aaKnown RBP eCLIP5.61□□□□□ -1.51
LIG3-211ENST00000588713 OLFM4Q6UX06 510 aa5.61□□□□□ -1.51
LIG3-211ENST00000588713 ERICH6Q7L0X2 663 aa5.61□□□□□ -1.51
LIG3-211ENST00000588713 KTN1Q86UP2 1357 aaKnown RBP5.61□□□□□ -1.51
LIG3-211ENST00000588713 USP48Q86UV5 1035 aa5.61□□□□□ -1.51
LIG3-211ENST00000588713 RPTORQ8N122 1335 aa5.61□□□□□ -1.51
LIG3-211ENST00000588713 C2orf69Q8N8R5 385 aa5.61□□□□□ -1.51
LIG3-211ENST00000588713 JDP2Q8WYK2 163 aa5.61□□□□□ -1.51
LIG3-211ENST00000588713 CNKSR1Q969H4 720 aa5.61□□□□□ -1.51
LIG3-211ENST00000588713 GBA2Q9HCG7 927 aaPredicted RBP5.61□□□□□ -1.51
LIG3-211ENST00000588713 AFDNP55196 1824 aaKnown RBP5.6□□□□□ -1.51
LIG3-211ENST00000588713 RGPD2P0DJD1 1756 aa5.6□□□□□ -1.51
LIG3-211ENST00000588713 A0A1W2PPC1 479 aa5.6□□□□□ -1.51
LIG3-211ENST00000588713 WTIPA6NIX2 430 aaPredicted RBP5.6□□□□□ -1.51
LIG3-211ENST00000588713 PPEF1O14829 653 aaPredicted RBP5.6□□□□□ -1.51
LIG3-211ENST00000588713 NPHP1O15259 732 aa5.6□□□□□ -1.51
LIG3-211ENST00000588713 HOXC9P31274 260 aa5.6□□□□□ -1.51
LIG3-211ENST00000588713 PDE6BP35913 854 aa5.6□□□□□ -1.51
LIG3-211ENST00000588713 CDC37L1Q7L3B6 337 aa5.6□□□□□ -1.51
LIG3-211ENST00000588713 SYMPKQ92797 1274 aaKnown RBP5.6□□□□□ -1.51
LIG3-211ENST00000588713 ADARB2Q9NS39 739 aaKnown RBP5.6□□□□□ -1.51
LIG3-211ENST00000588713 LHX6Q9UPM6 363 aa5.6□□□□□ -1.51
LIG3-211ENST00000588713 PCDHGA4Q9Y5G9 962 aa5.6□□□□□ -1.51
LIG3-211ENST00000588713 LAMA3Q16787 3333 aa5.6□□□□□ -1.51
LIG3-211ENST00000588713 COL11A2P13942 1736 aaPredicted RBP5.6□□□□□ -1.51
LIG3-211ENST00000588713 MON2Q7Z3U7 1717 aa5.6□□□□□ -1.51
LIG3-211ENST00000588713 CEP290O15078 2479 aa5.59□□□□□ -1.51
LIG3-211ENST00000588713 MAP3K19Q56UN5 1328 aa5.59□□□□□ -1.51
LIG3-211ENST00000588713 SYNGAP1Q96PV0 1343 aa5.59□□□□□ -1.51
LIG3-211ENST00000588713 ANP32CO43423 234 aa5.59□□□□□ -1.51
LIG3-211ENST00000588713 OTOP1Q7RTM1 612 aa5.59□□□□□ -1.51
LIG3-211ENST00000588713 STAP2Q9UGK3 403 aa5.59□□□□□ -1.51
LIG3-211ENST00000588713 HTTP42858 3142 aa5.59□□□□□ -1.51
LIG3-211ENST00000588713 RBBP6Q7Z6E9 1792 aaKnown RBP5.59□□□□□ -1.51
LIG3-211ENST00000588713 CENPFP49454 3210 aa5.59□□□□□ -1.52
LIG3-211ENST00000588713 CACNA1SQ13698 1873 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 SLX4Q8IY92 1834 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 IRS2Q9Y4H2 1338 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 COL5A3P25940 1745 aaPredicted RBP5.58□□□□□ -1.52
LIG3-211ENST00000588713 PPP1R37O75864 691 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 PBX2P40425 430 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 RASAL3Q86YV0 1011 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 DCAF11Q8TEB1 546 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 ARMC5Q96C12 935 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 FAM161BQ96MY7 647 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 BRIP1Q9BX63 1249 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 R3HDMLQ9H3Y0 253 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 PDZRN3Q9UPQ7 1066 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 HCN4Q9Y3Q4 1203 aa5.58□□□□□ -1.52
LIG3-211ENST00000588713 KIAA0100Q14667 2235 aaKnown RBP5.58□□□□□ -1.52
LIG3-211ENST00000588713 BCORQ6W2J9 1755 aa5.57□□□□□ -1.52
LIG3-211ENST00000588713 NRXN2Q9P2S2 1712 aa5.57□□□□□ -1.52
LIG3-211ENST00000588713 CENPJQ9HC77 1338 aaPredicted RBP5.57□□□□□ -1.52
LIG3-211ENST00000588713 ZBTB7BO15156 539 aaPredicted RBP5.57□□□□□ -1.52
LIG3-211ENST00000588713 PTCD1O75127 700 aaKnown RBP5.57□□□□□ -1.52
LIG3-211ENST00000588713 FBLN1P23142 703 aa5.57□□□□□ -1.52
LIG3-211ENST00000588713 STYK1Q6J9G0 422 aa5.57□□□□□ -1.52
LIG3-211ENST00000588713 RTKN2Q8IZC4 609 aa5.57□□□□□ -1.52
LIG3-211ENST00000588713 MASTLQ96GX5 879 aa5.57□□□□□ -1.52
LIG3-211ENST00000588713 RTN4Q9NQC3 1192 aaKnown RBP5.57□□□□□ -1.52
LIG3-211ENST00000588713 GPRC5DQ9NZD1 345 aa5.57□□□□□ -1.52
LIG3-211ENST00000588713 PTPN22Q9Y2R2 807 aa5.57□□□□□ -1.52
LIG3-211ENST00000588713 NR2E3Q9Y5X4 410 aa5.57□□□□□ -1.52
LIG3-211ENST00000588713 MYH14Q7Z406 1995 aaKnown RBP5.56□□□□□ -1.52
LIG3-211ENST00000588713 TONSLQ96HA7 1378 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 ADM5C9JUS6 153 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 SRGNP10124 158 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 PRKCSHP14314 528 aaPredicted RBP5.56□□□□□ -1.52
LIG3-211ENST00000588713 NKX1-1Q15270 411 aaPredicted RBP5.56□□□□□ -1.52
LIG3-211ENST00000588713 PRR5LQ6MZQ0 368 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 KRT26Q7Z3Y9 468 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 LARGE2Q8N3Y3 721 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 TRPM4Q8TD43 1214 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 ZNF333Q96JL9 665 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 GUCD1Q96NT3 240 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 BCL2L12Q9HB09 334 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 NARFQ9UHQ1 456 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 COL4A5P29400 1685 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 ANKRD31Q8N7Z5 1873 aa5.56□□□□□ -1.52
LIG3-211ENST00000588713 SOS1Q07889 1333 aaPredicted RBP5.55□□□□□ -1.52
LIG3-211ENST00000588713 GMPSP49915 693 aaPredicted RBP5.55□□□□□ -1.52
LIG3-211ENST00000588713 BCAMP50895 628 aa5.55□□□□□ -1.52
LIG3-211ENST00000588713 HIRAP54198 1017 aaPredicted RBP5.55□□□□□ -1.52
LIG3-211ENST00000588713 SLC9C1Q4G0N8 1177 aa5.55□□□□□ -1.52
LIG3-211ENST00000588713 NOM1Q5C9Z4 860 aaKnown RBP5.55□□□□□ -1.52
LIG3-211ENST00000588713 INTS5Q6P9B9 1019 aaKnown RBP5.55□□□□□ -1.52
LIG3-211ENST00000588713 MAFAQ8NHW3 353 aaPredicted RBP5.55□□□□□ -1.52
LIG3-211ENST00000588713 C7orf43Q8WVR3 580 aa5.55□□□□□ -1.52
LIG3-211ENST00000588713 MPHOSPH9Q99550 1183 aa5.55□□□□□ -1.52
LIG3-211ENST00000588713 HTATIP2Q9BUP3 242 aa5.55□□□□□ -1.52
LIG3-211ENST00000588713 BCL2L13Q9BXK5 485 aa5.55□□□□□ -1.52
LIG3-211ENST00000588713 PGAP2Q9UHJ9 254 aa5.55□□□□□ -1.52
LIG3-211ENST00000588713 SPG7Q9UQ90 795 aa5.55□□□□□ -1.52
LIG3-211ENST00000588713 EYSQ5T1H1 3165 aa5.55□□□□□ -1.52
LIG3-211ENST00000588713 COL15A1P39059 1388 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms