RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 THRAP3Q9Y2W1 955 aaKnown RBP6.92□□□□□ -1.3
LIG3-210ENST00000588109 V9GY48 417 aaPredicted RBP6.92□□□□□ -1.3
LIG3-210ENST00000588109 MAP3K5Q99683 1374 aa6.92□□□□□ -1.3
LIG3-210ENST00000588109 PLEKHG2Q9H7P9 1386 aa6.92□□□□□ -1.3
LIG3-210ENST00000588109 OVOS2A0A0G2JMS6 1433 aa6.92□□□□□ -1.3
LIG3-210ENST00000588109 CFAP99D6REC4 459 aa6.91□□□□□ -1.3
LIG3-210ENST00000588109 CENPBP07199 599 aaPredicted RBP6.91□□□□□ -1.3
LIG3-210ENST00000588109 CCNYL3P0C7X3 344 aa6.91□□□□□ -1.3
LIG3-210ENST00000588109 CTHP32929 405 aa6.91□□□□□ -1.3
LIG3-210ENST00000588109 CALD1Q05682 793 aaKnown RBP6.91□□□□□ -1.3
LIG3-210ENST00000588109 PTPRNQ16849 979 aa6.91□□□□□ -1.3
LIG3-210ENST00000588109 CCDC27Q2M243 656 aa6.91□□□□□ -1.3
LIG3-210ENST00000588109 AKAP4Q5JQC9 854 aa6.91□□□□□ -1.3
LIG3-210ENST00000588109 WWC1Q8IX03 1113 aa6.91□□□□□ -1.3
LIG3-210ENST00000588109 DDX54Q8TDD1 881 aaKnown RBP6.91□□□□□ -1.3
LIG3-210ENST00000588109 GJD4Q96KN9 370 aaPredicted RBP6.91□□□□□ -1.3
LIG3-210ENST00000588109 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.91□□□□□ -1.3
LIG3-210ENST00000588109 QTRT2Q9H974 415 aaKnown RBP6.91□□□□□ -1.3
LIG3-210ENST00000588109 WNK3Q9BYP7 1800 aa6.91□□□□□ -1.3
LIG3-210ENST00000588109 PCDH11XQ9BZA7 1347 aa6.91□□□□□ -1.3
LIG3-210ENST00000588109 PCDH11YQ9BZA8 1340 aa6.91□□□□□ -1.3
LIG3-210ENST00000588109 PKD1L3Q7Z443 1732 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 DLG5Q8TDM6 1919 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 EXOC5O00471 708 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 HTATSF1O43719 755 aaKnown RBP6.9□□□□□ -1.3
LIG3-210ENST00000588109 AP1G2O75843 785 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 HSP90AB1P08238 724 aaKnown RBP6.9□□□□□ -1.3
LIG3-210ENST00000588109 RPIAP49247 311 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 PDE3BQ13370 1112 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 DCTN1Q14203 1278 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 DDB1Q16531 1140 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 PPP2R2DQ66LE6 453 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 LYPD8Q6UX82 237 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 MCM10Q7L590 875 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 IFNL2Q8IZJ0 200 aa6.9□□□□□ -1.3
LIG3-210ENST00000588109 LAS1LQ9Y4W2 734 aaKnown RBP6.9□□□□□ -1.3
LIG3-210ENST00000588109 DISP2A7MBM2 1401 aa6.9□□□□□ -1.31
LIG3-210ENST00000588109 ATRNO75882 1429 aa6.9□□□□□ -1.31
LIG3-210ENST00000588109 PHKG2P15735 406 aa6.89□□□□□ -1.31
LIG3-210ENST00000588109 TMEM259Q4ZIN3 620 aa6.89□□□□□ -1.31
LIG3-210ENST00000588109 MPRIPQ6WCQ1 1025 aa6.89□□□□□ -1.31
LIG3-210ENST00000588109 WDR63Q8IWG1 891 aa6.89□□□□□ -1.31
LIG3-210ENST00000588109 THUMPD2Q9BTF0 503 aaKnown RBP6.89□□□□□ -1.31
LIG3-210ENST00000588109 GTF3C3Q9Y5Q9 886 aa6.89□□□□□ -1.31
LIG3-210ENST00000588109 TNS2Q63HR2 1409 aa6.89□□□□□ -1.31
LIG3-210ENST00000588109 LRRC37A3O60309 1634 aa6.89□□□□□ -1.31
LIG3-210ENST00000588109 GLI3P10071 1580 aa6.88□□□□□ -1.31
LIG3-210ENST00000588109 ZNF521Q96K83 1311 aa6.88□□□□□ -1.31
LIG3-210ENST00000588109 E9PSI1 815 aa6.88□□□□□ -1.31
LIG3-210ENST00000588109 CYP27B1O15528 508 aa6.88□□□□□ -1.31
LIG3-210ENST00000588109 RFC5P40937 340 aa6.88□□□□□ -1.31
LIG3-210ENST00000588109 RBM6P78332 1123 aaKnown RBP6.88□□□□□ -1.31
LIG3-210ENST00000588109 TEFQ10587 303 aa6.88□□□□□ -1.31
LIG3-210ENST00000588109 LIAT1Q6ZQX7 453 aa6.88□□□□□ -1.31
LIG3-210ENST00000588109 MYH16Q9H6N6 1097 aa6.88□□□□□ -1.31
LIG3-210ENST00000588109 EVA1BQ9NVM1 165 aa6.88□□□□□ -1.31
LIG3-210ENST00000588109 SHANK3Q9BYB0 1731 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 IL16Q14005 1332 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 RNMTO43148 476 aaKnown RBP6.87□□□□□ -1.31
LIG3-210ENST00000588109 RXRBP28702 533 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 CABP4P57796 275 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 GNAI1P63096 354 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 CTDSPL2Q05D32 466 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 KCNH2Q12809 1159 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 TMEM132AQ24JP5 1023 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 SPRYD7Q5W111 196 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 SEPT12Q8IYM1 358 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 IL17REQ8NFR9 667 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 DCAF5Q96JK2 942 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 LGR6Q9HBX8 967 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 IFT57Q9NWB7 429 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 THSD7AQ9UPZ6 1657 aa6.87□□□□□ -1.31
LIG3-210ENST00000588109 KDM6AO15550 1401 aaPredicted RBP6.86□□□□□ -1.31
LIG3-210ENST00000588109 SLFN5Q08AF3 891 aa6.86□□□□□ -1.31
LIG3-210ENST00000588109 TAF7Q15545 349 aaPredicted RBP6.86□□□□□ -1.31
LIG3-210ENST00000588109 PLA2G2CQ5R387 149 aa6.86□□□□□ -1.31
LIG3-210ENST00000588109 ZNF598Q86UK7 904 aaKnown RBP6.86□□□□□ -1.31
LIG3-210ENST00000588109 TSPYL4Q9UJ04 414 aa6.86□□□□□ -1.31
LIG3-210ENST00000588109 VIRMAQ69YN4 1812 aaKnown RBP6.85□□□□□ -1.31
LIG3-210ENST00000588109 SCN11AQ9UI33 1791 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 CEMIPQ8WUJ3 1361 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 FANCIQ9NVI1 1328 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 BTBD11A6QL63 1104 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 ERVV-2B6SEH9 535 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 ZNF697Q5TEC3 545 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 MARCH10Q8NA82 808 aaPredicted RBP6.85□□□□□ -1.31
LIG3-210ENST00000588109 NFATC2IPQ8NCF5 419 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 PNMA1Q8ND90 353 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 ARMC2Q8NEN0 867 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 TSR2Q969E8 191 aaKnown RBP6.85□□□□□ -1.31
LIG3-210ENST00000588109 SYTL4Q96C24 671 aaPredicted RBP6.85□□□□□ -1.31
LIG3-210ENST00000588109 SLC52A2Q9HAB3 445 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 TMOD3Q9NYL9 352 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 MIS18AQ9NYP9 233 aa6.85□□□□□ -1.31
LIG3-210ENST00000588109 ADAMTS7Q9UKP4 1686 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 FOXC1Q12948 553 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 TRIM32Q13049 653 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 DUSP27Q5VZP5 1158 aa6.84□□□□□ -1.31
LIG3-210ENST00000588109 PTCRAQ6ISU1 281 aaPredicted RBP6.84□□□□□ -1.31
LIG3-210ENST00000588109 ERICH6Q7L0X2 663 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms