RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 RBM43Q6ZSC3 357 aaKnown RBP14.43□□□□□ -0.1
SHMT1-208ENST00000582352 LRRC59Q96AG4 307 aaKnown RBP14.43□□□□□ -0.1
SHMT1-208ENST00000582352 PHF8Q9UPP1 1060 aa14.43□□□□□ -0.1
SHMT1-208ENST00000582352 TAF6LQ9Y6J9 622 aa14.43□□□□□ -0.1
SHMT1-208ENST00000582352 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.43□□□□□ -0.1
SHMT1-208ENST00000582352 OVOS2A0A0G2JMS6 1433 aa14.43□□□□□ -0.1
SHMT1-208ENST00000582352 PXDNQ92626 1479 aa14.43□□□□□ -0.1
SHMT1-208ENST00000582352 ZNF75DP51815 510 aa14.43□□□□□ -0.1
SHMT1-208ENST00000582352 CBX1P83916 185 aa14.43□□□□□ -0.1
SHMT1-208ENST00000582352 ZNF589Q86UQ0 364 aaPredicted RBP14.43□□□□□ -0.1
SHMT1-208ENST00000582352 TDRD7Q8NHU6 1098 aaKnown RBP14.43□□□□□ -0.1
SHMT1-208ENST00000582352 JCADQ9P266 1359 aa14.43□□□□□ -0.1
SHMT1-208ENST00000582352 NR1I2O75469 434 aa14.42□□□□□ -0.1
SHMT1-208ENST00000582352 ZNF165P49910 485 aa14.42□□□□□ -0.1
SHMT1-208ENST00000582352 PLA2G4DQ86XP0 818 aa14.42□□□□□ -0.1
SHMT1-208ENST00000582352 KAZALD1Q96I82 304 aa14.42□□□□□ -0.1
SHMT1-208ENST00000582352 UTYO14607 1347 aa14.42□□□□□ -0.1
SHMT1-208ENST00000582352 CTIFO43310 598 aaKnown RBP14.42□□□□□ -0.1
SHMT1-208ENST00000582352 AIMP1Q12904 312 aaKnown RBP14.42□□□□□ -0.1
SHMT1-208ENST00000582352 THEMISQ8N1K5 641 aaPredicted RBP14.42□□□□□ -0.1
SHMT1-208ENST00000582352 C16orf45Q96MC5 204 aaPredicted RBP14.42□□□□□ -0.1
SHMT1-208ENST00000582352 H3BQV1 296 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 HSP90B1P14625 803 aaKnown RBP14.41□□□□□ -0.1
SHMT1-208ENST00000582352 DMTNQ08495 405 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 LRMPQ12912 555 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 TSGA10IPQ3SY00 556 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 IFFO2Q5TF58 517 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 KCNH5Q8NCM2 988 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 ANKRD7Q92527 254 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 GTF3C6Q969F1 213 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 DNAJC25Q9H1X3 360 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 PRAMEF22A3QJZ6 481 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 CAVIN2O95810 425 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 UTP14CQ5TAP6 766 aaKnown RBP14.41□□□□□ -0.1
SHMT1-208ENST00000582352 ZSCAN25Q6NSZ9 544 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 CLIP2Q9UDT6 1046 aa14.41□□□□□ -0.1
SHMT1-208ENST00000582352 JAK2O60674 1132 aa14.4□□□□□ -0.1
SHMT1-208ENST00000582352 BRF1Q92994 677 aa14.4□□□□□ -0.1
SHMT1-208ENST00000582352 HEG1Q9ULI3 1381 aa14.4□□□□□ -0.1
SHMT1-208ENST00000582352 TAF5LO75529 589 aa14.4□□□□□ -0.1
SHMT1-208ENST00000582352 ZSCAN20P17040 1043 aaPredicted RBP14.4□□□□□ -0.1
SHMT1-208ENST00000582352 ATP2B3Q16720 1220 aa14.4□□□□□ -0.1
SHMT1-208ENST00000582352 PGBD1Q96JS3 809 aa14.4□□□□□ -0.1
SHMT1-208ENST00000582352 DDX21Q9NR30 783 aaKnown RBP eCLIP14.4□□□□□ -0.1
SHMT1-208ENST00000582352 NRBP1Q9UHY1 535 aa14.4□□□□□ -0.1
SHMT1-208ENST00000582352 PHRF1Q9P1Y6 1649 aaKnown RBP14.4□□□□□ -0.1
SHMT1-208ENST00000582352 MRC1P22897 1456 aa14.4□□□□□ -0.1
SHMT1-208ENST00000582352 SMTNL1A8MU46 457 aa14.39□□□□□ -0.11
SHMT1-208ENST00000582352 NEXNQ0ZGT2 675 aa14.39□□□□□ -0.11
SHMT1-208ENST00000582352 RIC3Q7Z5B4 369 aa14.39□□□□□ -0.11
SHMT1-208ENST00000582352 KLHDC4Q8TBB5 520 aa14.39□□□□□ -0.11
SHMT1-208ENST00000582352 NEK1Q96PY6 1258 aa14.39□□□□□ -0.11
SHMT1-208ENST00000582352 CFAP45Q9UL16 551 aa14.39□□□□□ -0.11
SHMT1-208ENST00000582352 GOLGA6L19H0YKK7 550 aa14.39□□□□□ -0.11
SHMT1-208ENST00000582352 RESTQ13127 1097 aa14.39□□□□□ -0.11
SHMT1-208ENST00000582352 ZSCAN16Q9H4T2 348 aaPredicted RBP14.39□□□□□ -0.11
SHMT1-208ENST00000582352 USPL1Q5W0Q7 1092 aa14.39□□□□□ -0.11
SHMT1-208ENST00000582352 TNNT1P13805 278 aa14.38□□□□□ -0.11
SHMT1-208ENST00000582352 FGD1P98174 961 aa14.38□□□□□ -0.11
SHMT1-208ENST00000582352 EDC3Q96F86 508 aaKnown RBP14.38□□□□□ -0.11
SHMT1-208ENST00000582352 CDC25BP30305 580 aa14.38□□□□□ -0.11
SHMT1-208ENST00000582352 PSME1Q06323 249 aa14.38□□□□□ -0.11
SHMT1-208ENST00000582352 Q6ZUG5 572 aa14.38□□□□□ -0.11
SHMT1-208ENST00000582352 DDX11Q96FC9 970 aa14.38□□□□□ -0.11
SHMT1-208ENST00000582352 SPDYE4A6NLX3 237 aa14.37□□□□□ -0.11
SHMT1-208ENST00000582352 IGKV5-2P06315 115 aa14.37□□□□□ -0.11
SHMT1-208ENST00000582352 TPD52L1Q16890 204 aaPredicted RBP14.37□□□□□ -0.11
SHMT1-208ENST00000582352 U3KPZ7 1027 aaPredicted RBP14.37□□□□□ -0.11
SHMT1-208ENST00000582352 U2AF2P26368 475 aaKnown RBP eCLIP14.37□□□□□ -0.11
SHMT1-208ENST00000582352 NCBP1Q09161 790 aaKnown RBP14.37□□□□□ -0.11
SHMT1-208ENST00000582352 ZHX1Q9UKY1 873 aaPredicted RBP14.37□□□□□ -0.11
SHMT1-208ENST00000582352 PAXBP1Q9Y5B6 917 aa14.37□□□□□ -0.11
SHMT1-208ENST00000582352 RFX7Q2KHR2 1363 aa14.37□□□□□ -0.11
SHMT1-208ENST00000582352 SIPA1L3O60292 1781 aaPredicted RBP14.36□□□□□ -0.11
SHMT1-208ENST00000582352 ATP5JP18859 108 aa14.36□□□□□ -0.11
SHMT1-208ENST00000582352 CCDC112Q8NEF3 446 aa14.36□□□□□ -0.11
SHMT1-208ENST00000582352 GTPBP4Q9BZE4 634 aaKnown RBP14.36□□□□□ -0.11
SHMT1-208ENST00000582352 NEURL1BA8MQ27 555 aa14.36□□□□□ -0.11
SHMT1-208ENST00000582352 CEBPZQ03701 1054 aaKnown RBP14.36□□□□□ -0.11
SHMT1-208ENST00000582352 SYCP1Q15431 976 aa14.36□□□□□ -0.11
SHMT1-208ENST00000582352 STX1AQ16623 288 aa14.36□□□□□ -0.11
SHMT1-208ENST00000582352 CACTINQ8WUQ7 758 aaKnown RBP14.36□□□□□ -0.11
SHMT1-208ENST00000582352 COL15A1P39059 1388 aa14.36□□□□□ -0.11
SHMT1-208ENST00000582352 CTAGE5O15320 804 aa14.35□□□□□ -0.11
SHMT1-208ENST00000582352 DNAJC2Q99543 621 aaKnown RBP14.35□□□□□ -0.11
SHMT1-208ENST00000582352 DBNLQ9UJU6 430 aaKnown RBP14.35□□□□□ -0.11
SHMT1-208ENST00000582352 ZNF609O15014 1411 aa14.35□□□□□ -0.11
SHMT1-208ENST00000582352 GCKRQ14397 625 aa14.35□□□□□ -0.11
SHMT1-208ENST00000582352 CCDC144BQ3MJ40 725 aa14.35□□□□□ -0.11
SHMT1-208ENST00000582352 TNNI3KQ59H18 835 aa14.35□□□□□ -0.11
SHMT1-208ENST00000582352 SARM1Q6SZW1 724 aa14.35□□□□□ -0.11
SHMT1-208ENST00000582352 CCDC73Q6ZRK6 1079 aa14.35□□□□□ -0.11
SHMT1-208ENST00000582352 CCDC144CPQ8IYA2 1237 aa14.35□□□□□ -0.11
SHMT1-208ENST00000582352 FPGT-TNNI3KV9GXZ4 949 aa14.35□□□□□ -0.11
SHMT1-208ENST00000582352 MYH15Q9Y2K3 1946 aa14.35□□□□□ -0.11
SHMT1-208ENST00000582352 MYL6BP14649 208 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 PDIA6Q15084 440 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 CCDC129Q6ZRS4 1044 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 FEZ1Q99689 392 aa14.34□□□□□ -0.11
SHMT1-208ENST00000582352 MYD88Q99836 296 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms