RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 BRIP1Q9BX63 1249 aa11.92□□□□□ -0.5
RFFL-210ENST00000582308 COL11A2P13942 1736 aaPredicted RBP11.91□□□□□ -0.5
RFFL-210ENST00000582308 KLRG2A4D1S0 409 aaPredicted RBP11.91□□□□□ -0.5
RFFL-210ENST00000582308 POLD1P28340 1107 aa11.91□□□□□ -0.5
RFFL-210ENST00000582308 SF3B3Q15393 1217 aaKnown RBP11.91□□□□□ -0.5
RFFL-210ENST00000582308 RPAP2Q8IXW5 612 aaPredicted RBP11.91□□□□□ -0.5
RFFL-210ENST00000582308 CCDC85AQ96PX6 553 aaPredicted RBP11.91□□□□□ -0.5
RFFL-210ENST00000582308 GREM2Q9H772 168 aa11.91□□□□□ -0.5
RFFL-210ENST00000582308 GTF3C3Q9Y5Q9 886 aa11.91□□□□□ -0.5
RFFL-210ENST00000582308 CACNA1SQ13698 1873 aa11.91□□□□□ -0.5
RFFL-210ENST00000582308 COL4A1P02462 1669 aa11.91□□□□□ -0.5
RFFL-210ENST00000582308 SRGAP3O43295 1099 aa11.9□□□□□ -0.5
RFFL-210ENST00000582308 RFX5P48382 616 aaPredicted RBP11.9□□□□□ -0.5
RFFL-210ENST00000582308 POLA2Q14181 598 aa11.9□□□□□ -0.5
RFFL-210ENST00000582308 FAM161AQ3B820 660 aa11.9□□□□□ -0.5
RFFL-210ENST00000582308 CCDC152Q4G0S7 254 aa11.9□□□□□ -0.5
RFFL-210ENST00000582308 C10orf71Q711Q0 1435 aa11.9□□□□□ -0.5
RFFL-210ENST00000582308 SSH3Q8TE77 659 aa11.9□□□□□ -0.5
RFFL-210ENST00000582308 SPON1Q9HCB6 807 aa11.9□□□□□ -0.5
RFFL-210ENST00000582308 CHMP3Q9Y3E7 222 aa11.9□□□□□ -0.5
RFFL-210ENST00000582308 RTL9Q8NET4 1388 aa11.9□□□□□ -0.5
RFFL-210ENST00000582308 KIAA1551Q9HCM1 1747 aa11.89□□□□□ -0.51
RFFL-210ENST00000582308 IGHDP01880 384 aa11.89□□□□□ -0.51
RFFL-210ENST00000582308 HDAC1Q13547 482 aaPredicted RBP11.89□□□□□ -0.51
RFFL-210ENST00000582308 CRY2Q49AN0 593 aa11.89□□□□□ -0.51
RFFL-210ENST00000582308 SEC31BQ9NQW1 1179 aa11.89□□□□□ -0.51
RFFL-210ENST00000582308 PPP4R2Q9NY27 417 aa11.89□□□□□ -0.51
RFFL-210ENST00000582308 DLEC1Q9Y238 1755 aa11.89□□□□□ -0.51
RFFL-210ENST00000582308 ITGA6P23229 1130 aa11.88□□□□□ -0.51
RFFL-210ENST00000582308 PDE6BP35913 854 aa11.88□□□□□ -0.51
RFFL-210ENST00000582308 IFIT5Q13325 482 aaKnown RBP11.88□□□□□ -0.51
RFFL-210ENST00000582308 KLHDC4Q8TBB5 520 aa11.88□□□□□ -0.51
RFFL-210ENST00000582308 ZNF594Q96JF6 807 aaPredicted RBP11.88□□□□□ -0.51
RFFL-210ENST00000582308 PA2G4Q9UQ80 394 aaKnown RBP11.88□□□□□ -0.51
RFFL-210ENST00000582308 HMMRO75330 724 aa11.87□□□□□ -0.51
RFFL-210ENST00000582308 SRGNP10124 158 aa11.87□□□□□ -0.51
RFFL-210ENST00000582308 HOXA10P31260 410 aaPredicted RBP11.87□□□□□ -0.51
RFFL-210ENST00000582308 PTPN12Q05209 780 aaKnown RBP11.87□□□□□ -0.51
RFFL-210ENST00000582308 CCDC57Q2TAC2 916 aa11.87□□□□□ -0.51
RFFL-210ENST00000582308 B4GALNT3Q6L9W6 998 aa11.87□□□□□ -0.51
RFFL-210ENST00000582308 C2CD5Q86YS7 1000 aa11.87□□□□□ -0.51
RFFL-210ENST00000582308 RWDD1Q9H446 243 aaPredicted RBP11.87□□□□□ -0.51
RFFL-210ENST00000582308 SLX4Q8IY92 1834 aa11.87□□□□□ -0.51
RFFL-210ENST00000582308 BRCA1P38398 1863 aaKnown RBP11.87□□□□□ -0.51
RFFL-210ENST00000582308 ANKRD18BA2A2Z9 1011 aa11.86□□□□□ -0.51
RFFL-210ENST00000582308 NPR1P16066 1061 aa11.86□□□□□ -0.51
RFFL-210ENST00000582308 CHRNA5P30532 468 aa11.86□□□□□ -0.51
RFFL-210ENST00000582308 DDX46Q7L014 1031 aaKnown RBP11.86□□□□□ -0.51
RFFL-210ENST00000582308 RPGRQ92834 1020 aaKnown RBP11.86□□□□□ -0.51
RFFL-210ENST00000582308 CCDC136Q96JN2 1154 aa11.86□□□□□ -0.51
RFFL-210ENST00000582308 DCTPP1Q9H773 170 aa11.86□□□□□ -0.51
RFFL-210ENST00000582308 COPRSQ9NQ92 184 aa11.86□□□□□ -0.51
RFFL-210ENST00000582308 NOP58Q9Y2X3 529 aaKnown RBP11.86□□□□□ -0.51
RFFL-210ENST00000582308 A0A1B0GUL6 1792 aa11.85□□□□□ -0.51
RFFL-210ENST00000582308 H0YIN7 160 aa11.85□□□□□ -0.51
RFFL-210ENST00000582308 SURF6O75683 361 aaKnown RBP11.85□□□□□ -0.51
RFFL-210ENST00000582308 KCNA3P22001 575 aa11.85□□□□□ -0.51
RFFL-210ENST00000582308 CELF1Q92879 486 aaKnown RBP11.85□□□□□ -0.51
RFFL-210ENST00000582308 MASTLQ96GX5 879 aa11.85□□□□□ -0.51
RFFL-210ENST00000582308 RBM17Q96I25 401 aaKnown RBP11.85□□□□□ -0.51
RFFL-210ENST00000582308 CRAMP1Q96RY5 1269 aa11.85□□□□□ -0.51
RFFL-210ENST00000582308 PUS3Q9BZE2 481 aaKnown RBP11.85□□□□□ -0.51
RFFL-210ENST00000582308 SIL1Q9H173 461 aa11.85□□□□□ -0.51
RFFL-210ENST00000582308 PDZRN3Q9UPQ7 1066 aa11.85□□□□□ -0.51
RFFL-210ENST00000582308 CD2APQ9Y5K6 639 aa11.85□□□□□ -0.51
RFFL-210ENST00000582308 LRP5O75197 1615 aa11.85□□□□□ -0.51
RFFL-210ENST00000582308 KDM2BQ8NHM5 1336 aa11.85□□□□□ -0.51
RFFL-210ENST00000582308 A0A0G2JLW4 131 aa11.84□□□□□ -0.51
RFFL-210ENST00000582308 DPEP1P16444 411 aa11.84□□□□□ -0.51
RFFL-210ENST00000582308 TGFB2P61812 414 aa11.84□□□□□ -0.51
RFFL-210ENST00000582308 RPS8P62241 208 aaKnown RBP11.84□□□□□ -0.51
RFFL-210ENST00000582308 GRAPQ13588 217 aa11.84□□□□□ -0.51
RFFL-210ENST00000582308 LRRC24Q50LG9 513 aa11.84□□□□□ -0.51
RFFL-210ENST00000582308 TAF7LQ5H9L4 462 aa11.84□□□□□ -0.51
RFFL-210ENST00000582308 STYK1Q6J9G0 422 aa11.84□□□□□ -0.51
RFFL-210ENST00000582308 ATG9AQ7Z3C6 839 aa11.84□□□□□ -0.51
RFFL-210ENST00000582308 GRAPLQ8TC17 118 aaPredicted RBP11.84□□□□□ -0.51
RFFL-210ENST00000582308 ZNF622Q969S3 477 aaKnown RBP eCLIP11.84□□□□□ -0.51
RFFL-210ENST00000582308 CDC5LQ99459 802 aaKnown RBP11.84□□□□□ -0.51
RFFL-210ENST00000582308 PPP1R1BQ9UD71 204 aaPredicted RBP11.84□□□□□ -0.51
RFFL-210ENST00000582308 EXOC6BQ9Y2D4 811 aa11.84□□□□□ -0.51
RFFL-210ENST00000582308 RIPOR2Q9Y4F9 1068 aa11.84□□□□□ -0.51
RFFL-210ENST00000582308 EYA2O00167 538 aa11.83□□□□□ -0.52
RFFL-210ENST00000582308 LDHAL6AQ6ZMR3 332 aa11.83□□□□□ -0.52
RFFL-210ENST00000582308 ANKRD18AQ8IVF6 992 aa11.83□□□□□ -0.52
RFFL-210ENST00000582308 SMC5Q8IY18 1101 aa11.83□□□□□ -0.52
RFFL-210ENST00000582308 KLHL34Q8N239 644 aa11.83□□□□□ -0.52
RFFL-210ENST00000582308 BBOX1O75936 387 aa11.82□□□□□ -0.52
RFFL-210ENST00000582308 CIAO1O76071 339 aa11.82□□□□□ -0.52
RFFL-210ENST00000582308 SASH1O94885 1247 aa11.82□□□□□ -0.52
RFFL-210ENST00000582308 ALDH1B1P30837 517 aa11.82□□□□□ -0.52
RFFL-210ENST00000582308 IGHMBP2P38935 993 aaKnown RBP11.82□□□□□ -0.52
RFFL-210ENST00000582308 G3BP1Q13283 466 aaKnown RBP eCLIP11.82□□□□□ -0.52
RFFL-210ENST00000582308 SLC51AQ86UW1 340 aa11.82□□□□□ -0.52
RFFL-210ENST00000582308 MPHOSPH8Q99549 860 aa11.82□□□□□ -0.52
RFFL-210ENST00000582308 BSDC1Q9NW68 430 aaPredicted RBP11.82□□□□□ -0.52
RFFL-210ENST00000582308 FBXO3Q9UK99 471 aa11.82□□□□□ -0.52
RFFL-210ENST00000582308 LRRC37AA6NMS7 1700 aa11.82□□□□□ -0.52
RFFL-210ENST00000582308 SRCAPQ6ZRS2 3230 aa11.81□□□□□ -0.52
RFFL-210ENST00000582308 APBB1O00213 710 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms