RNA–Protein interactions for RNA: ENST00000576708.5

NUP88-212, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-212ENST00000576708 POLKQ9UBT6 870 aa8.59□□□□□ -1.03
NUP88-212ENST00000576708 LY75O60449 1722 aa8.59□□□□□ -1.03
NUP88-212ENST00000576708 CGNL1Q0VF96 1302 aa8.58□□□□□ -1.04
NUP88-212ENST00000576708 PCDH11XQ9BZA7 1347 aa8.58□□□□□ -1.04
NUP88-212ENST00000576708 PCDH11YQ9BZA8 1340 aa8.58□□□□□ -1.04
NUP88-212ENST00000576708 PPEF1O14829 653 aaPredicted RBP8.58□□□□□ -1.04
NUP88-212ENST00000576708 JUNDP17535 347 aa8.58□□□□□ -1.04
NUP88-212ENST00000576708 MSL1Q68DK7 614 aa8.58□□□□□ -1.04
NUP88-212ENST00000576708 KIF24Q5T7B8 1368 aa8.58□□□□□ -1.04
NUP88-212ENST00000576708 TOGARAM1Q9Y4F4 1720 aa8.57□□□□□ -1.04
NUP88-212ENST00000576708 WASHC2AQ641Q2 1341 aa8.57□□□□□ -1.04
NUP88-212ENST00000576708 AMIGO3Q86WK7 504 aa8.57□□□□□ -1.04
NUP88-212ENST00000576708 NLGN2Q8NFZ4 835 aa8.57□□□□□ -1.04
NUP88-212ENST00000576708 SLC16A10Q8TF71 515 aa8.57□□□□□ -1.04
NUP88-212ENST00000576708 PIGBQ92521 554 aa8.57□□□□□ -1.04
NUP88-212ENST00000576708 PANK3Q9H999 370 aa8.57□□□□□ -1.04
NUP88-212ENST00000576708 PALLDQ8WX93 1383 aa8.57□□□□□ -1.04
NUP88-212ENST00000576708 CLSPNQ9HAW4 1339 aa8.56□□□□□ -1.04
NUP88-212ENST00000576708 NCAPD2Q15021 1401 aa8.56□□□□□ -1.04
NUP88-212ENST00000576708 DXOO77932 396 aaKnown RBP8.56□□□□□ -1.04
NUP88-212ENST00000576708 POLD1P28340 1107 aa8.56□□□□□ -1.04
NUP88-212ENST00000576708 EIF4G2P78344 907 aaKnown RBP eCLIP8.56□□□□□ -1.04
NUP88-212ENST00000576708 EIF4A2Q14240 407 aaKnown RBP8.56□□□□□ -1.04
NUP88-212ENST00000576708 GPR162Q16538 588 aa8.56□□□□□ -1.04
NUP88-212ENST00000576708 CCER1Q8TC90 406 aaPredicted RBP8.56□□□□□ -1.04
NUP88-212ENST00000576708 HMX1Q9NP08 348 aaPredicted RBP8.56□□□□□ -1.04
NUP88-212ENST00000576708 QSER1Q2KHR3 1735 aa8.56□□□□□ -1.04
NUP88-212ENST00000576708 MAP2P11137 1827 aaKnown RBP8.55□□□□□ -1.04
NUP88-212ENST00000576708 MMP16P51512 607 aa8.55□□□□□ -1.04
NUP88-212ENST00000576708 DESI1Q6ICB0 168 aa8.55□□□□□ -1.04
NUP88-212ENST00000576708 LYPD8Q6UX82 237 aa8.55□□□□□ -1.04
NUP88-212ENST00000576708 CCDC24Q8N4L8 307 aa8.55□□□□□ -1.04
NUP88-212ENST00000576708 ZNF784Q8NCA9 323 aaPredicted RBP8.55□□□□□ -1.04
NUP88-212ENST00000576708 BANK1Q8NDB2 785 aa8.55□□□□□ -1.04
NUP88-212ENST00000576708 SPG7Q9UQ90 795 aa8.55□□□□□ -1.04
NUP88-212ENST00000576708 MAP3K5Q99683 1374 aa8.55□□□□□ -1.04
NUP88-212ENST00000576708 COL24A1Q17RW2 1714 aa8.54□□□□□ -1.04
NUP88-212ENST00000576708 PKD1L3Q7Z443 1732 aa8.54□□□□□ -1.04
NUP88-212ENST00000576708 ANKRD26Q9UPS8 1709 aa8.54□□□□□ -1.04
NUP88-212ENST00000576708 ITGB4P16144 1822 aa8.54□□□□□ -1.04
NUP88-212ENST00000576708 C5P01031 1676 aa8.54□□□□□ -1.04
NUP88-212ENST00000576708 PHKG2P15735 406 aa8.54□□□□□ -1.04
NUP88-212ENST00000576708 MCM6Q14566 821 aa8.54□□□□□ -1.04
NUP88-212ENST00000576708 PPP1R18Q6NYC8 613 aa8.54□□□□□ -1.04
NUP88-212ENST00000576708 ASAP1Q9ULH1 1129 aa8.54□□□□□ -1.04
NUP88-212ENST00000576708 RNF223E7ERA6 249 aa8.53□□□□□ -1.04
NUP88-212ENST00000576708 ITPK1Q13572 414 aa8.53□□□□□ -1.04
NUP88-212ENST00000576708 PTPRNQ16849 979 aa8.53□□□□□ -1.04
NUP88-212ENST00000576708 MTMR14Q8NCE2 650 aa8.53□□□□□ -1.04
NUP88-212ENST00000576708 LINC00116Q8NCU8 138 aa8.53□□□□□ -1.04
NUP88-212ENST00000576708 EPS8L1Q8TE68 723 aa8.53□□□□□ -1.04
NUP88-212ENST00000576708 SMARCC1Q92922 1105 aaPredicted RBP8.53□□□□□ -1.04
NUP88-212ENST00000576708 NUDT12Q9BQG2 462 aa8.53□□□□□ -1.04
NUP88-212ENST00000576708 TMOD3Q9NYL9 352 aa8.53□□□□□ -1.04
NUP88-212ENST00000576708 FCF1Q9Y324 198 aaKnown RBP8.53□□□□□ -1.04
NUP88-212ENST00000576708 LOC102724428A0A0B4J2F2 783 aa8.52□□□□□ -1.05
NUP88-212ENST00000576708 YBX3P16989 372 aaKnown RBP eCLIP8.52□□□□□ -1.05
NUP88-212ENST00000576708 CTHP32929 405 aa8.52□□□□□ -1.05
NUP88-212ENST00000576708 SIK1P57059 783 aa8.52□□□□□ -1.05
NUP88-212ENST00000576708 NR6A1Q15406 480 aa8.52□□□□□ -1.05
NUP88-212ENST00000576708 AEBP1Q8IUX7 1158 aa8.52□□□□□ -1.05
NUP88-212ENST00000576708 IFNL2Q8IZJ0 200 aa8.52□□□□□ -1.05
NUP88-212ENST00000576708 ATG3Q9NT62 314 aa8.52□□□□□ -1.05
NUP88-212ENST00000576708 MAP10Q9P2G4 905 aa8.52□□□□□ -1.05
NUP88-212ENST00000576708 TAF1LQ8IZX4 1826 aa8.52□□□□□ -1.05
NUP88-212ENST00000576708 C4BP0C0L5 1744 aa8.51□□□□□ -1.05
NUP88-212ENST00000576708 CCNYL3P0C7X3 344 aa8.51□□□□□ -1.05
NUP88-212ENST00000576708 FLIIQ13045 1269 aa8.51□□□□□ -1.05
NUP88-212ENST00000576708 MORC1Q86VD1 984 aa8.51□□□□□ -1.05
NUP88-212ENST00000576708 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.51□□□□□ -1.05
NUP88-212ENST00000576708 WWC3Q9ULE0 1092 aa8.51□□□□□ -1.05
NUP88-212ENST00000576708 IGSF1Q8N6C5 1336 aa8.51□□□□□ -1.05
NUP88-212ENST00000576708 GGCXP38435 758 aa8.5□□□□□ -1.05
NUP88-212ENST00000576708 FLAD1Q8NFF5 587 aa8.5□□□□□ -1.05
NUP88-212ENST00000576708 SLC4A9Q96Q91 983 aa8.5□□□□□ -1.05
NUP88-212ENST00000576708 F12P00748 615 aaPredicted RBP8.49□□□□□ -1.05
NUP88-212ENST00000576708 PLEKHO1Q53GL0 409 aaPredicted RBP8.49□□□□□ -1.05
NUP88-212ENST00000576708 PLA2G2CQ5R387 149 aa8.49□□□□□ -1.05
NUP88-212ENST00000576708 SULT6B1Q6IMI4 303 aa8.49□□□□□ -1.05
NUP88-212ENST00000576708 PTCRAQ6ISU1 281 aaPredicted RBP8.49□□□□□ -1.05
NUP88-212ENST00000576708 ZNF530Q6P9A1 599 aaPredicted RBP8.49□□□□□ -1.05
NUP88-212ENST00000576708 POM121Q96HA1 1249 aa8.49□□□□□ -1.05
NUP88-212ENST00000576708 TRIM34Q9BYJ4 488 aa8.49□□□□□ -1.05
NUP88-212ENST00000576708 EVA1BQ9NVM1 165 aa8.49□□□□□ -1.05
NUP88-212ENST00000576708 UTRNP46939 3433 aa8.49□□□□□ -1.05
NUP88-212ENST00000576708 KDM6AO15550 1401 aaPredicted RBP8.48□□□□□ -1.05
NUP88-212ENST00000576708 IL13P35225 146 aa8.48□□□□□ -1.05
NUP88-212ENST00000576708 KCNH2Q12809 1159 aa8.48□□□□□ -1.05
NUP88-212ENST00000576708 CNGB1Q14028 1251 aaPredicted RBP8.48□□□□□ -1.05
NUP88-212ENST00000576708 IFFO2Q5TF58 517 aa8.48□□□□□ -1.05
NUP88-212ENST00000576708 KNSTRNQ9Y448 316 aa8.48□□□□□ -1.05
NUP88-212ENST00000576708 CD2APQ9Y5K6 639 aa8.48□□□□□ -1.05
NUP88-212ENST00000576708 UBR3Q6ZT12 1888 aa8.48□□□□□ -1.05
NUP88-212ENST00000576708 CHD4Q14839 1912 aa8.48□□□□□ -1.05
NUP88-212ENST00000576708 KIF7Q2M1P5 1343 aa8.48□□□□□ -1.05
NUP88-212ENST00000576708 ERVV-2B6SEH9 535 aa8.47□□□□□ -1.05
NUP88-212ENST00000576708 RGS20O76081 388 aa8.47□□□□□ -1.05
NUP88-212ENST00000576708 SSFA2P28290 1259 aa8.47□□□□□ -1.05
NUP88-212ENST00000576708 CABP4P57796 275 aa8.47□□□□□ -1.05
NUP88-212ENST00000576708 CLUAP1Q96AJ1 413 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms