RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FZD6O60353 706 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 IGFBP4P22692 258 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 EIF1AXP47813 144 aaKnown RBP8.12□□□□□ -1.11
VPS53-219ENST00000576019 EZH2Q15910 746 aaKnown RBP8.12□□□□□ -1.11
VPS53-219ENST00000576019 NBPF20Q3BBV1 942 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 PPP1R18Q6NYC8 613 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 NLGN1Q8N2Q7 840 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 DMRTB1Q96MA1 342 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 NBPF3Q9H094 633 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 SAP130Q9H0E3 1048 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 PRDM9Q9NQV7 894 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 ZNF358Q9NW07 568 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 EMILIN1Q9Y6C2 1016 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 DLC1Q96QB1 1528 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 ARHGAP35Q9NRY4 1499 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 NCOA3Q9Y6Q9 1424 aa8.12□□□□□ -1.11
VPS53-219ENST00000576019 SAMD9LQ8IVG5 1584 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 RAB11FIP3O75154 756 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 DXOO77932 396 aaKnown RBP8.11□□□□□ -1.11
VPS53-219ENST00000576019 RNF20Q5VTR2 975 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 EGFLAMQ63HQ2 1017 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 SCG3Q8WXD2 468 aaKnown RBP8.11□□□□□ -1.11
VPS53-219ENST00000576019 VTI1AQ96AJ9 217 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 ZFRQ96KR1 1074 aaKnown RBP8.11□□□□□ -1.11
VPS53-219ENST00000576019 STAC3Q96MF2 364 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 CITED4Q96RK1 184 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 GMLQ99445 158 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 SYT17Q9BSW7 474 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 PRR14Q9BWN1 585 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 INPP5FQ9Y2H2 1132 aa8.11□□□□□ -1.11
VPS53-219ENST00000576019 GPATCH8Q9UKJ3 1502 aaKnown RBP8.1□□□□□ -1.11
VPS53-219ENST00000576019 NUP188Q5SRE5 1749 aa8.1□□□□□ -1.11
VPS53-219ENST00000576019 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.1□□□□□ -1.11
VPS53-219ENST00000576019 IGHA2P01877 340 aa8.1□□□□□ -1.11
VPS53-219ENST00000576019 ARID5AQ03989 594 aa8.1□□□□□ -1.11
VPS53-219ENST00000576019 ZNF394Q53GI3 561 aa8.1□□□□□ -1.11
VPS53-219ENST00000576019 LAPTM4BQ86VI4 370 aa8.1□□□□□ -1.11
VPS53-219ENST00000576019 SEPT12Q8IYM1 358 aa8.1□□□□□ -1.11
VPS53-219ENST00000576019 KLRG1Q96E93 195 aa8.1□□□□□ -1.11
VPS53-219ENST00000576019 PCDHGB7Q9Y5F8 929 aa8.1□□□□□ -1.11
VPS53-219ENST00000576019 PARD3Q8TEW0 1356 aa8.1□□□□□ -1.11
VPS53-219ENST00000576019 WDR90Q96KV7 1748 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 PNMA6FA0A0J9YX94 578 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 ESPNB1AK53 854 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 NR1I2O75469 434 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 ERFEQ4G0M1 354 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 C16orf46Q6P387 395 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 KRT27Q7Z3Y8 459 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 MRPL50Q8N5N7 158 aaKnown RBP8.09□□□□□ -1.11
VPS53-219ENST00000576019 LRCH3Q96II8 777 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 CAMKK2Q96RR4 588 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 FAM129BQ96TA1 746 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 UNC93B1Q9H1C4 597 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 ATP10DQ9P241 1426 aa8.09□□□□□ -1.11
VPS53-219ENST00000576019 TET3O43151 1660 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 RAB15P59190 212 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 BMS1Q14692 1282 aaKnown RBP8.08□□□□□ -1.12
VPS53-219ENST00000576019 MSS51Q4VC12 460 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 JAZF1Q86VZ6 243 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 SLC10A4Q96EP9 437 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 SPACA7Q96KW9 195 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 NIF3L1Q9GZT8 377 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 OSBPL2Q9H1P3 480 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 CYLDQ9NQC7 956 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 PCDHB3Q9Y5E6 796 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 ADGRB2O60241 1585 aa8.08□□□□□ -1.12
VPS53-219ENST00000576019 MLLT1Q03111 559 aaPredicted RBP8.07□□□□□ -1.12
VPS53-219ENST00000576019 AGERQ15109 404 aa8.07□□□□□ -1.12
VPS53-219ENST00000576019 TCEAL1Q15170 157 aa8.07□□□□□ -1.12
VPS53-219ENST00000576019 SH3RF1Q7Z6J0 888 aa8.07□□□□□ -1.12
VPS53-219ENST00000576019 CERS3Q8IU89 383 aa8.07□□□□□ -1.12
VPS53-219ENST00000576019 FAM160A2Q8N612 972 aaPredicted RBP8.07□□□□□ -1.12
VPS53-219ENST00000576019 FHDC1Q9C0D6 1143 aaPredicted RBP8.07□□□□□ -1.12
VPS53-219ENST00000576019 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.07□□□□□ -1.12
VPS53-219ENST00000576019 TMEM229AB2RXF0 380 aa8.06□□□□□ -1.12
VPS53-219ENST00000576019 STAU1O95793 577 aaKnown RBP8.06□□□□□ -1.12
VPS53-219ENST00000576019 MYCP01106 439 aaPredicted RBP8.06□□□□□ -1.12
VPS53-219ENST00000576019 RACK1P63244 317 aaKnown RBP8.06□□□□□ -1.12
VPS53-219ENST00000576019 RBL2Q08999 1139 aa8.06□□□□□ -1.12
VPS53-219ENST00000576019 ENOX2Q16206 610 aaKnown RBP8.06□□□□□ -1.12
VPS53-219ENST00000576019 ALKBH2Q6NS38 261 aa8.06□□□□□ -1.12
VPS53-219ENST00000576019 CCDC24Q8N4L8 307 aa8.06□□□□□ -1.12
VPS53-219ENST00000576019 ALKBH8Q96BT7 664 aaKnown RBP8.06□□□□□ -1.12
VPS53-219ENST00000576019 TSPAN10Q9H1Z9 355 aaPredicted RBP8.06□□□□□ -1.12
VPS53-219ENST00000576019 DMGDHQ9UI17 866 aaKnown RBP8.06□□□□□ -1.12
VPS53-219ENST00000576019 CASZ1Q86V15 1759 aa8.06□□□□□ -1.12
VPS53-219ENST00000576019 MARF1Q9Y4F3 1742 aaKnown RBP8.06□□□□□ -1.12
VPS53-219ENST00000576019 CDC42BPBQ9Y5S2 1711 aa8.06□□□□□ -1.12
VPS53-219ENST00000576019 hCG_2014768A0A024R1R8 64 aa8.05□□□□□ -1.12
VPS53-219ENST00000576019 TNFRSF10BO14763 440 aa8.05□□□□□ -1.12
VPS53-219ENST00000576019 GNA15P30679 374 aa8.05□□□□□ -1.12
VPS53-219ENST00000576019 SCTRP47872 440 aa8.05□□□□□ -1.12
VPS53-219ENST00000576019 MMP16P51512 607 aa8.05□□□□□ -1.12
VPS53-219ENST00000576019 PTPROQ16827 1216 aa8.05□□□□□ -1.12
VPS53-219ENST00000576019 PTCRAQ6ISU1 281 aaPredicted RBP8.05□□□□□ -1.12
VPS53-219ENST00000576019 MCF2L2Q86YR7 1114 aa8.05□□□□□ -1.12
VPS53-219ENST00000576019 FOXJ1Q92949 421 aa8.05□□□□□ -1.12
VPS53-219ENST00000576019 CRELD1Q96HD1 420 aa8.05□□□□□ -1.12
VPS53-219ENST00000576019 DDX41Q9UJV9 622 aaKnown RBP8.05□□□□□ -1.12
VPS53-219ENST00000576019 INO80Q9ULG1 1556 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms