RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 H0YIN7 160 aa10.77□□□□□ -0.69
NUP88-211ENST00000575976 UBTFL1P0CB47 393 aaPredicted RBP10.77□□□□□ -0.69
NUP88-211ENST00000575976 SRGNP10124 158 aa10.77□□□□□ -0.69
NUP88-211ENST00000575976 HSP90B1P14625 803 aaKnown RBP10.77□□□□□ -0.69
NUP88-211ENST00000575976 CTSWP56202 376 aa10.77□□□□□ -0.69
NUP88-211ENST00000575976 FOXO4P98177 505 aa10.77□□□□□ -0.69
NUP88-211ENST00000575976 SF3B3Q15393 1217 aaKnown RBP10.77□□□□□ -0.69
NUP88-211ENST00000575976 CRY2Q49AN0 593 aa10.77□□□□□ -0.69
NUP88-211ENST00000575976 CCDC85AQ96PX6 553 aaPredicted RBP10.77□□□□□ -0.69
NUP88-211ENST00000575976 PDZRN3Q9UPQ7 1066 aa10.77□□□□□ -0.69
NUP88-211ENST00000575976 KIF13BQ9NQT8 1826 aa10.77□□□□□ -0.69
NUP88-211ENST00000575976 DDX60Q8IY21 1712 aaKnown RBP10.76□□□□□ -0.69
NUP88-211ENST00000575976 N4BP2Q86UW6 1770 aaPredicted RBP10.76□□□□□ -0.69
NUP88-211ENST00000575976 CSF1RP07333 972 aa10.76□□□□□ -0.69
NUP88-211ENST00000575976 GNAI3P08754 354 aa10.76□□□□□ -0.69
NUP88-211ENST00000575976 NPR1P16066 1061 aa10.76□□□□□ -0.69
NUP88-211ENST00000575976 TTLL11Q8NHH1 800 aa10.76□□□□□ -0.69
NUP88-211ENST00000575976 ZNF622Q969S3 477 aaKnown RBP eCLIP10.76□□□□□ -0.69
NUP88-211ENST00000575976 MASTLQ96GX5 879 aa10.76□□□□□ -0.69
NUP88-211ENST00000575976 BICC1Q9H694 974 aaKnown RBP10.76□□□□□ -0.69
NUP88-211ENST00000575976 DDX19BQ9UMR2 479 aa10.76□□□□□ -0.69
NUP88-211ENST00000575976 SLC34A2O95436 690 aa10.75□□□□□ -0.69
NUP88-211ENST00000575976 STYK1Q6J9G0 422 aa10.75□□□□□ -0.69
NUP88-211ENST00000575976 LMBR1LQ6UX01 489 aa10.75□□□□□ -0.69
NUP88-211ENST00000575976 ANKRD44Q8N8A2 993 aa10.75□□□□□ -0.69
NUP88-211ENST00000575976 RPGRQ92834 1020 aaKnown RBP10.75□□□□□ -0.69
NUP88-211ENST00000575976 CRBNQ96SW2 442 aa10.75□□□□□ -0.69
NUP88-211ENST00000575976 GREM2Q9H772 168 aa10.75□□□□□ -0.69
NUP88-211ENST00000575976 WWC3Q9ULE0 1092 aa10.75□□□□□ -0.69
NUP88-211ENST00000575976 LRRFIP2Q9Y608 721 aaKnown RBP10.75□□□□□ -0.69
NUP88-211ENST00000575976 KIAA1551Q9HCM1 1747 aa10.75□□□□□ -0.69
NUP88-211ENST00000575976 GNAI2P04899 355 aa10.74□□□□□ -0.69
NUP88-211ENST00000575976 HOXA10P31260 410 aaPredicted RBP10.74□□□□□ -0.69
NUP88-211ENST00000575976 APLP1P51693 650 aa10.74□□□□□ -0.69
NUP88-211ENST00000575976 RABL6Q3YEC7 729 aaPredicted RBP10.74□□□□□ -0.69
NUP88-211ENST00000575976 CCDC152Q4G0S7 254 aa10.74□□□□□ -0.69
NUP88-211ENST00000575976 RBM17Q96I25 401 aaKnown RBP10.74□□□□□ -0.69
NUP88-211ENST00000575976 C1orf115Q9H7X2 142 aa10.74□□□□□ -0.69
NUP88-211ENST00000575976 SEC31BQ9NQW1 1179 aa10.74□□□□□ -0.69
NUP88-211ENST00000575976 PIM2Q9P1W9 311 aa10.74□□□□□ -0.69
NUP88-211ENST00000575976 HDAC5Q9UQL6 1122 aa10.74□□□□□ -0.69
NUP88-211ENST00000575976 LAMB2P55268 1798 aa10.73□□□□□ -0.69
NUP88-211ENST00000575976 ALDH1B1P30837 517 aa10.73□□□□□ -0.69
NUP88-211ENST00000575976 IRX6P78412 446 aaPredicted RBP10.73□□□□□ -0.69
NUP88-211ENST00000575976 FAM161AQ3B820 660 aa10.73□□□□□ -0.69
NUP88-211ENST00000575976 DDX46Q7L014 1031 aaKnown RBP10.73□□□□□ -0.69
NUP88-211ENST00000575976 TTLL6Q8N841 843 aa10.73□□□□□ -0.69
NUP88-211ENST00000575976 CELF1Q92879 486 aaKnown RBP10.73□□□□□ -0.69
NUP88-211ENST00000575976 CNKSR1Q969H4 720 aa10.73□□□□□ -0.69
NUP88-211ENST00000575976 CRAMP1Q96RY5 1269 aa10.73□□□□□ -0.69
NUP88-211ENST00000575976 ZBTB40Q9NUA8 1239 aa10.73□□□□□ -0.69
NUP88-211ENST00000575976 CHMP3Q9Y3E7 222 aa10.73□□□□□ -0.69
NUP88-211ENST00000575976 COL11A2P13942 1736 aaPredicted RBP10.72□□□□□ -0.69
NUP88-211ENST00000575976 ITGA6P23229 1130 aa10.72□□□□□ -0.69
NUP88-211ENST00000575976 PRELPP51888 382 aa10.72□□□□□ -0.69
NUP88-211ENST00000575976 GRAPQ13588 217 aa10.72□□□□□ -0.69
NUP88-211ENST00000575976 COL13A1Q5TAT6 717 aaPredicted RBP10.72□□□□□ -0.69
NUP88-211ENST00000575976 GRAPLQ8TC17 118 aaPredicted RBP10.72□□□□□ -0.69
NUP88-211ENST00000575976 CHMP4BQ9H444 224 aaKnown RBP10.72□□□□□ -0.69
NUP88-211ENST00000575976 ANKRD18BA2A2Z9 1011 aa10.71□□□□□ -0.69
NUP88-211ENST00000575976 YBX3P16989 372 aaKnown RBP eCLIP10.71□□□□□ -0.69
NUP88-211ENST00000575976 RPS8P62241 208 aaKnown RBP10.71□□□□□ -0.69
NUP88-211ENST00000575976 IFIT5Q13325 482 aaKnown RBP10.71□□□□□ -0.69
NUP88-211ENST00000575976 CCDC57Q2TAC2 916 aa10.71□□□□□ -0.69
NUP88-211ENST00000575976 DALRD3Q5D0E6 543 aaKnown RBP10.71□□□□□ -0.69
NUP88-211ENST00000575976 PRPF40BQ6NWY9 871 aaKnown RBP10.71□□□□□ -0.69
NUP88-211ENST00000575976 SLC51AQ86UW1 340 aa10.71□□□□□ -0.69
NUP88-211ENST00000575976 RTL9Q8NET4 1388 aa10.71□□□□□ -0.69
NUP88-211ENST00000575976 EXOC6Q8TAG9 804 aa10.71□□□□□ -0.69
NUP88-211ENST00000575976 ZNF219Q9P2Y4 722 aaPredicted RBP10.71□□□□□ -0.69
NUP88-211ENST00000575976 BCS1LQ9Y276 419 aa10.71□□□□□ -0.69
NUP88-211ENST00000575976 COL4A1P02462 1669 aa10.7□□□□□ -0.7
NUP88-211ENST00000575976 PNMA6EA0A0J9YXQ4 647 aa10.7□□□□□ -0.7
NUP88-211ENST00000575976 PPEF1O14829 653 aaPredicted RBP10.7□□□□□ -0.7
NUP88-211ENST00000575976 BBOX1O75936 387 aa10.7□□□□□ -0.7
NUP88-211ENST00000575976 RFX5P48382 616 aaPredicted RBP10.7□□□□□ -0.7
NUP88-211ENST00000575976 ATP8B2P98198 1209 aa10.7□□□□□ -0.7
NUP88-211ENST00000575976 MTX1Q13505 466 aa10.7□□□□□ -0.7
NUP88-211ENST00000575976 CEP85Q6P2H3 762 aa10.7□□□□□ -0.7
NUP88-211ENST00000575976 ANKRD18AQ8IVF6 992 aa10.7□□□□□ -0.7
NUP88-211ENST00000575976 ZNF526Q8TF50 670 aaPredicted RBP10.7□□□□□ -0.7
NUP88-211ENST00000575976 C7orf43Q8WVR3 580 aa10.7□□□□□ -0.7
NUP88-211ENST00000575976 ZNF594Q96JF6 807 aaPredicted RBP10.7□□□□□ -0.7
NUP88-211ENST00000575976 CDC5LQ99459 802 aaKnown RBP10.7□□□□□ -0.7
NUP88-211ENST00000575976 DLEC1Q9Y238 1755 aa10.7□□□□□ -0.7
NUP88-211ENST00000575976 MYH3P11055 1940 aa10.69□□□□□ -0.7
NUP88-211ENST00000575976 SRGAP3O43295 1099 aa10.69□□□□□ -0.7
NUP88-211ENST00000575976 C21orf2O43822 256 aa10.69□□□□□ -0.7
NUP88-211ENST00000575976 IGHMBP2P38935 993 aaKnown RBP10.69□□□□□ -0.7
NUP88-211ENST00000575976 TAF7LQ5H9L4 462 aa10.69□□□□□ -0.7
NUP88-211ENST00000575976 OLFM4Q6UX06 510 aa10.69□□□□□ -0.7
NUP88-211ENST00000575976 KLHDC4Q8TBB5 520 aa10.69□□□□□ -0.7
NUP88-211ENST00000575976 TAF1P21675 1872 aa10.68□□□□□ -0.7
NUP88-211ENST00000575976 SLX4Q8IY92 1834 aa10.68□□□□□ -0.7
NUP88-211ENST00000575976 PTPN12Q05209 780 aaKnown RBP10.68□□□□□ -0.7
NUP88-211ENST00000575976 POLA2Q14181 598 aa10.68□□□□□ -0.7
NUP88-211ENST00000575976 SIRT2Q8IXJ6 389 aa10.68□□□□□ -0.7
NUP88-211ENST00000575976 SP8Q8IXZ3 490 aa10.68□□□□□ -0.7
NUP88-211ENST00000575976 TNS4Q8IZW8 715 aa10.68□□□□□ -0.7
NUP88-211ENST00000575976 DNAJC5GQ8N7S2 189 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms