RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 GPR108Q9NPR9 543 aa16.9■□□□□ 0.3
VPS33B-208ENST00000574755 MED23Q9ULK4 1368 aa16.9■□□□□ 0.3
VPS33B-208ENST00000574755 CIAO1O76071 339 aa16.89■□□□□ 0.3
VPS33B-208ENST00000574755 GPTP24298 496 aa16.89■□□□□ 0.3
VPS33B-208ENST00000574755 AK2P54819 239 aa16.89■□□□□ 0.3
VPS33B-208ENST00000574755 TIMM10P62072 90 aa16.89■□□□□ 0.3
VPS33B-208ENST00000574755 HLFQ16534 295 aa16.89■□□□□ 0.3
VPS33B-208ENST00000574755 JAKMIP1Q96N16 626 aaKnown RBP16.89■□□□□ 0.3
VPS33B-208ENST00000574755 ANKRD36CQ5JPF3 1778 aa16.89■□□□□ 0.29
VPS33B-208ENST00000574755 PIP4K2BP78356 416 aa16.89■□□□□ 0.29
VPS33B-208ENST00000574755 HSP90AB3PQ58FF7 597 aa16.89■□□□□ 0.29
VPS33B-208ENST00000574755 CPA1P15085 419 aa16.88■□□□□ 0.29
VPS33B-208ENST00000574755 ADCK5Q3MIX3 580 aa16.88■□□□□ 0.29
VPS33B-208ENST00000574755 MCTP1Q6DN14 999 aa16.88■□□□□ 0.29
VPS33B-208ENST00000574755 KCNB2Q92953 911 aa16.88■□□□□ 0.29
VPS33B-208ENST00000574755 CCDC85AQ96PX6 553 aaPredicted RBP16.88■□□□□ 0.29
VPS33B-208ENST00000574755 PUS3Q9BZE2 481 aaKnown RBP16.88■□□□□ 0.29
VPS33B-208ENST00000574755 ZDHHC9Q9Y397 364 aa16.88■□□□□ 0.29
VPS33B-208ENST00000574755 ZNF609O15014 1411 aa16.88■□□□□ 0.29
VPS33B-208ENST00000574755 CREB3L3Q68CJ9 461 aa16.88■□□□□ 0.29
VPS33B-208ENST00000574755 DDX46Q7L014 1031 aaKnown RBP16.88■□□□□ 0.29
VPS33B-208ENST00000574755 ZNF589Q86UQ0 364 aaPredicted RBP16.88■□□□□ 0.29
VPS33B-208ENST00000574755 RFX7Q2KHR2 1363 aa16.88■□□□□ 0.29
VPS33B-208ENST00000574755 NUP98P52948 1817 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 PLA2G12BQ9BX93 195 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 TM6SF1Q9BZW5 370 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 LIMCH1Q9UPQ0 1083 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 CYP46A1Q9Y6A2 500 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 A0A1B0GUL7 405 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 TAF7LQ5H9L4 462 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 RNF20Q5VTR2 975 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 NLRP10Q86W26 655 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 ACSBG1Q96GR2 724 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 CEP126Q9P2H0 1117 aa16.87■□□□□ 0.29
VPS33B-208ENST00000574755 IL6STP40189 918 aaPredicted RBP16.86■□□□□ 0.29
VPS33B-208ENST00000574755 LARP6Q9BRS8 491 aaKnown RBP16.86■□□□□ 0.29
VPS33B-208ENST00000574755 ZSWIM6Q9HCJ5 1215 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 SLC27A2O14975 620 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 TOM1O60784 492 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 IFIT5Q13325 482 aaKnown RBP16.86■□□□□ 0.29
VPS33B-208ENST00000574755 VPS53Q5VIR6 699 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 RUFY3Q7L099 469 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 DZIP3Q86Y13 1208 aaKnown RBP16.86■□□□□ 0.29
VPS33B-208ENST00000574755 SYNE4Q8N205 404 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 PDRG1Q9NUG6 133 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 SPATA31A5Q5VU36 1347 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 SPATA31A7Q8IWB4 1347 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 CDHR2Q9BYE9 1310 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 NWD2Q9ULI1 1742 aa16.86■□□□□ 0.29
VPS33B-208ENST00000574755 CSF1RP07333 972 aa16.85■□□□□ 0.29
VPS33B-208ENST00000574755 L1TD1Q5T7N2 865 aaKnown RBP16.85■□□□□ 0.29
VPS33B-208ENST00000574755 FOXD4L5Q5VV16 416 aaPredicted RBP16.85■□□□□ 0.29
VPS33B-208ENST00000574755 KBTBD3Q8NAB2 608 aa16.85■□□□□ 0.29
VPS33B-208ENST00000574755 FOXD4L4Q8WXT5 416 aaPredicted RBP16.85■□□□□ 0.29
VPS33B-208ENST00000574755 PAG1Q9NWQ8 432 aa16.85■□□□□ 0.29
VPS33B-208ENST00000574755 FBXO3Q9UK99 471 aa16.85■□□□□ 0.29
VPS33B-208ENST00000574755 TBC1D2BQ9UPU7 963 aa16.85■□□□□ 0.29
VPS33B-208ENST00000574755 MYH3P11055 1940 aa16.85■□□□□ 0.29
VPS33B-208ENST00000574755 GOLGA6L3A6NEY3 463 aa16.85■□□□□ 0.29
VPS33B-208ENST00000574755 GOLIM4O00461 696 aa16.85■□□□□ 0.29
VPS33B-208ENST00000574755 MARCH10Q8NA82 808 aaPredicted RBP16.85■□□□□ 0.29
VPS33B-208ENST00000574755 JCADQ9P266 1359 aa16.85■□□□□ 0.29
VPS33B-208ENST00000574755 TAF5LO75529 589 aa16.84■□□□□ 0.29
VPS33B-208ENST00000574755 CHGBP05060 677 aa16.84■□□□□ 0.29
VPS33B-208ENST00000574755 DDX49Q9Y6V7 483 aaKnown RBP16.84■□□□□ 0.29
VPS33B-208ENST00000574755 PALLDQ8WX93 1383 aa16.84■□□□□ 0.29
VPS33B-208ENST00000574755 ERVV-1B6SEH8 477 aa16.84■□□□□ 0.29
VPS33B-208ENST00000574755 BRD1O95696 1058 aa16.84■□□□□ 0.29
VPS33B-208ENST00000574755 IFIT1P09914 478 aaKnown RBP16.84■□□□□ 0.29
VPS33B-208ENST00000574755 PSMA5P28066 241 aa16.84■□□□□ 0.29
VPS33B-208ENST00000574755 TRMT112Q9UI30 125 aaKnown RBP16.84■□□□□ 0.29
VPS33B-208ENST00000574755 RPAP1Q9BWH6 1393 aaPredicted RBP16.83■□□□□ 0.28
VPS33B-208ENST00000574755 MCMDC2Q4G0Z9 681 aa16.83■□□□□ 0.28
VPS33B-208ENST00000574755 SEC62Q99442 399 aaKnown RBP16.83■□□□□ 0.28
VPS33B-208ENST00000574755 AKAP2Q9Y2D5 859 aa16.83■□□□□ 0.28
VPS33B-208ENST00000574755 SLIT2O94813 1529 aa16.83■□□□□ 0.28
VPS33B-208ENST00000574755 ATP6V1AP38606 617 aa16.82■□□□□ 0.28
VPS33B-208ENST00000574755 HMG20BQ9P0W2 317 aa16.82■□□□□ 0.28
VPS33B-208ENST00000574755 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.82■□□□□ 0.28
VPS33B-208ENST00000574755 IRS4O14654 1257 aaPredicted RBP16.82■□□□□ 0.28
VPS33B-208ENST00000574755 ITGA6P23229 1130 aa16.82■□□□□ 0.28
VPS33B-208ENST00000574755 CTSWP56202 376 aa16.82■□□□□ 0.28
VPS33B-208ENST00000574755 KLHL40Q2TBA0 621 aa16.82■□□□□ 0.28
VPS33B-208ENST00000574755 GORABQ5T7V8 394 aa16.82■□□□□ 0.28
VPS33B-208ENST00000574755 CCDC129Q6ZRS4 1044 aa16.82■□□□□ 0.28
VPS33B-208ENST00000574755 TTLL11Q8NHH1 800 aa16.82■□□□□ 0.28
VPS33B-208ENST00000574755 FSD2A1L4K1 749 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 CCDC158Q5M9N0 1113 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 BARGINQ6ZT62 677 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 GREM2Q9H772 168 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 LMBRD1Q9NUN5 540 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 SPEF2Q9C093 1822 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 SH3TC1Q8TE82 1336 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 LOC102724428A0A0B4J2F2 783 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 LARGE1O95461 756 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 SIK1P57059 783 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 BLOC1S2Q6QNY1 142 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 CCDC87Q9NVE4 849 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 BRPF3Q9ULD4 1205 aa16.81■□□□□ 0.28
VPS33B-208ENST00000574755 UBN2Q6ZU65 1347 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms