RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 PCCAP05165 728 aaPredicted RBP20.09■□□□□ 0.81
CHD3-215ENST00000572750 CNKSR1Q969H4 720 aa20.09■□□□□ 0.81
CHD3-215ENST00000572750 RNF181Q9P0P0 153 aa20.09■□□□□ 0.81
CHD3-215ENST00000572750 ZNF219Q9P2Y4 722 aaPredicted RBP20.09■□□□□ 0.81
CHD3-215ENST00000572750 FER1L6Q2WGJ9 1857 aa20.08■□□□□ 0.81
CHD3-215ENST00000572750 GCKRQ14397 625 aa20.08■□□□□ 0.81
CHD3-215ENST00000572750 BEND3Q5T5X7 828 aa20.08■□□□□ 0.81
CHD3-215ENST00000572750 UBE3BQ7Z3V4 1068 aa20.07■□□□□ 0.8
CHD3-215ENST00000572750 SPEF2Q9C093 1822 aa20.06■□□□□ 0.8
CHD3-215ENST00000572750 KIF16BQ96L93 1317 aa20.06■□□□□ 0.8
CHD3-215ENST00000572750 SLC51AQ86UW1 340 aa20.06■□□□□ 0.8
CHD3-215ENST00000572750 NOB1Q9ULX3 412 aaKnown RBP20.06■□□□□ 0.8
CHD3-215ENST00000572750 ABCC4O15439 1325 aa20.05■□□□□ 0.8
CHD3-215ENST00000572750 CDHR2Q9BYE9 1310 aa20.05■□□□□ 0.8
CHD3-215ENST00000572750 C21orf2O43822 256 aa20.05■□□□□ 0.8
CHD3-215ENST00000572750 BCAR3O75815 825 aa20.05■□□□□ 0.8
CHD3-215ENST00000572750 HOXA10P31260 410 aaPredicted RBP20.05■□□□□ 0.8
CHD3-215ENST00000572750 RBM17Q96I25 401 aaKnown RBP20.05■□□□□ 0.8
CHD3-215ENST00000572750 LRRC37AA6NMS7 1700 aa20.05■□□□□ 0.8
CHD3-215ENST00000572750 BRPF1P55201 1214 aaPredicted RBP20.04■□□□□ 0.8
CHD3-215ENST00000572750 OLFM4Q6UX06 510 aa20.04■□□□□ 0.8
CHD3-215ENST00000572750 SRCIN1Q9C0H9 1055 aa20.04■□□□□ 0.8
CHD3-215ENST00000572750 TIAM2Q8IVF5 1701 aa20.04■□□□□ 0.8
CHD3-215ENST00000572750 FOXN1O15353 648 aa20.03■□□□□ 0.8
CHD3-215ENST00000572750 ALDH1B1P30837 517 aa20.03■□□□□ 0.8
CHD3-215ENST00000572750 RASSF7Q02833 373 aa20.03■□□□□ 0.8
CHD3-215ENST00000572750 CCDC88AQ3V6T2 1871 aa20.03■□□□□ 0.8
CHD3-215ENST00000572750 H7C1W4 665 aa20.02■□□□□ 0.8
CHD3-215ENST00000572750 PPEF1O14829 653 aaPredicted RBP20.02■□□□□ 0.8
CHD3-215ENST00000572750 PDE8AO60658 829 aa20.02■□□□□ 0.8
CHD3-215ENST00000572750 CASP7P55210 303 aa20.02■□□□□ 0.8
CHD3-215ENST00000572750 CCDC85AQ96PX6 553 aaPredicted RBP20.02■□□□□ 0.8
CHD3-215ENST00000572750 CRAMP1Q96RY5 1269 aa20.02■□□□□ 0.8
CHD3-215ENST00000572750 PCDH10Q9P2E7 1040 aa20.02■□□□□ 0.8
CHD3-215ENST00000572750 NFKBIEO00221 500 aa20.01■□□□□ 0.79
CHD3-215ENST00000572750 ALDH1L1O75891 902 aa20.01■□□□□ 0.79
CHD3-215ENST00000572750 CTSWP56202 376 aa20.01■□□□□ 0.79
CHD3-215ENST00000572750 SF3B3Q15393 1217 aaKnown RBP20.01■□□□□ 0.79
CHD3-215ENST00000572750 FAM161AQ3B820 660 aa20.01■□□□□ 0.79
CHD3-215ENST00000572750 DDX46Q7L014 1031 aaKnown RBP20.01■□□□□ 0.79
CHD3-215ENST00000572750 C7orf43Q8WVR3 580 aa20.01■□□□□ 0.79
CHD3-215ENST00000572750 FRAT1Q92837 279 aaPredicted RBP20.01■□□□□ 0.79
CHD3-215ENST00000572750 SNED1Q8TER0 1413 aa20.01■□□□□ 0.79
CHD3-215ENST00000572750 GRM8O00222 908 aa20■□□□□ 0.79
CHD3-215ENST00000572750 HSP90B1P14625 803 aaKnown RBP20■□□□□ 0.79
CHD3-215ENST00000572750 API5Q9BZZ5 524 aaKnown RBP20■□□□□ 0.79
CHD3-215ENST00000572750 POTECB2RU33 542 aa19.99■□□□□ 0.79
CHD3-215ENST00000572750 GRAPQ13588 217 aa19.99■□□□□ 0.79
CHD3-215ENST00000572750 CCDC152Q4G0S7 254 aa19.99■□□□□ 0.79
CHD3-215ENST00000572750 CCDC93Q567U6 631 aa19.99■□□□□ 0.79
CHD3-215ENST00000572750 GRAPLQ8TC17 118 aaPredicted RBP19.99■□□□□ 0.79
CHD3-215ENST00000572750 C9orf78Q9NZ63 289 aaPredicted RBP19.99■□□□□ 0.79
CHD3-215ENST00000572750 TNNQ9UQP3 1299 aa19.99■□□□□ 0.79
CHD3-215ENST00000572750 TNRC18O15417 2968 aaPredicted RBP19.98■□□□□ 0.79
CHD3-215ENST00000572750 TRIM27P14373 513 aa19.98■□□□□ 0.79
CHD3-215ENST00000572750 SOGA3Q5TF21 947 aa19.98■□□□□ 0.79
CHD3-215ENST00000572750 CELF1Q92879 486 aaKnown RBP19.98■□□□□ 0.79
CHD3-215ENST00000572750 SEC31BQ9NQW1 1179 aa19.98■□□□□ 0.79
CHD3-215ENST00000572750 MKRN1Q9UHC7 482 aaKnown RBP19.98■□□□□ 0.79
CHD3-215ENST00000572750 VEGFAP15692 232 aaPredicted RBP19.97■□□□□ 0.79
CHD3-215ENST00000572750 LTBP1Q14766 1721 aa19.96■□□□□ 0.79
CHD3-215ENST00000572750 DICER1Q9UPY3 1922 aaKnown RBP19.96■□□□□ 0.79
CHD3-215ENST00000572750 NBPF7P0C2Y1 421 aaPredicted RBP19.96■□□□□ 0.79
CHD3-215ENST00000572750 TTLL11Q8NHH1 800 aa19.96■□□□□ 0.79
CHD3-215ENST00000572750 ARHGAP45Q92619 1136 aa19.96■□□□□ 0.79
CHD3-215ENST00000572750 PLA2G12BQ9BX93 195 aa19.96■□□□□ 0.79
CHD3-215ENST00000572750 TAOK3Q9H2K8 898 aa19.96■□□□□ 0.79
CHD3-215ENST00000572750 GREM2Q9H772 168 aa19.96■□□□□ 0.79
CHD3-215ENST00000572750 PRDM10Q9NQV6 1147 aa19.96■□□□□ 0.79
CHD3-215ENST00000572750 DUOX1Q9NRD9 1551 aa19.95■□□□□ 0.78
CHD3-215ENST00000572750 GLTPD2A6NH11 291 aa19.95■□□□□ 0.78
CHD3-215ENST00000572750 IPO8O15397 1037 aaKnown RBP19.95■□□□□ 0.78
CHD3-215ENST00000572750 CCT4P50991 539 aaKnown RBP19.95■□□□□ 0.78
CHD3-215ENST00000572750 ATF7IPQ6VMQ6 1270 aa19.95■□□□□ 0.78
CHD3-215ENST00000572750 RTL9Q8NET4 1388 aa19.95■□□□□ 0.78
CHD3-215ENST00000572750 EPHA10Q5JZY3 1008 aa19.94■□□□□ 0.78
CHD3-215ENST00000572750 ZKSCAN2Q63HK3 967 aa19.94■□□□□ 0.78
CHD3-215ENST00000572750 CLUAP1Q96AJ1 413 aa19.94■□□□□ 0.78
CHD3-215ENST00000572750 SUCLG2Q96I99 432 aa19.94■□□□□ 0.78
CHD3-215ENST00000572750 ATP6V0A2Q9Y487 856 aa19.94■□□□□ 0.78
CHD3-215ENST00000572750 UTYO14607 1347 aa19.94■□□□□ 0.78
CHD3-215ENST00000572750 LTBP3Q9NS15 1303 aa19.94■□□□□ 0.78
CHD3-215ENST00000572750 BBOX1O75936 387 aa19.93■□□□□ 0.78
CHD3-215ENST00000572750 FOXO4P98177 505 aa19.93■□□□□ 0.78
CHD3-215ENST00000572750 A0A1B0GUL6 1792 aa19.93■□□□□ 0.78
CHD3-215ENST00000572750 LMNB1P20700 586 aa19.92■□□□□ 0.78
CHD3-215ENST00000572750 FKBP4Q02790 459 aaKnown RBP eCLIP19.92■□□□□ 0.78
CHD3-215ENST00000572750 RTKN2Q8IZC4 609 aa19.92■□□□□ 0.78
CHD3-215ENST00000572750 USP44Q9H0E7 712 aa19.92■□□□□ 0.78
CHD3-215ENST00000572750 RCAN3Q9UKA8 241 aa19.92■□□□□ 0.78
CHD3-215ENST00000572750 CHMP3Q9Y3E7 222 aa19.92■□□□□ 0.78
CHD3-215ENST00000572750 ZC3H4Q9UPT8 1303 aaKnown RBP19.92■□□□□ 0.78
CHD3-215ENST00000572750 CC2D2BQ6DHV5 1058 aa19.91■□□□□ 0.78
CHD3-215ENST00000572750 KAZALD1Q96I82 304 aa19.91■□□□□ 0.78
CHD3-215ENST00000572750 CREBZFQ9NS37 354 aa19.91■□□□□ 0.78
CHD3-215ENST00000572750 COL4A5P29400 1685 aa19.91■□□□□ 0.78
CHD3-215ENST00000572750 CSF1RP07333 972 aa19.9■□□□□ 0.78
CHD3-215ENST00000572750 ITGA6P23229 1130 aa19.9■□□□□ 0.78
CHD3-215ENST00000572750 RPS8P62241 208 aaKnown RBP19.9■□□□□ 0.78
CHD3-215ENST00000572750 INTS3Q68E01 1043 aaKnown RBP19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms