RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 NOGQ13253 232 aa17.2■□□□□ 0.34
CCDC40-205ENST00000571028 AOC3Q16853 763 aa17.2■□□□□ 0.34
CCDC40-205ENST00000571028 ELL2O00472 640 aaPredicted RBP17.19■□□□□ 0.34
CCDC40-205ENST00000571028 HOXA10P31260 410 aaPredicted RBP17.19■□□□□ 0.34
CCDC40-205ENST00000571028 WDR63Q8IWG1 891 aa17.19■□□□□ 0.34
CCDC40-205ENST00000571028 CRAMP1Q96RY5 1269 aa17.19■□□□□ 0.34
CCDC40-205ENST00000571028 BCL2L13Q9BXK5 485 aa17.19■□□□□ 0.34
CCDC40-205ENST00000571028 BABAM1Q9NWV8 329 aa17.19■□□□□ 0.34
CCDC40-205ENST00000571028 ZNF853P0CG23 659 aa17.18■□□□□ 0.34
CCDC40-205ENST00000571028 EIF2S2P20042 333 aaKnown RBP17.18■□□□□ 0.34
CCDC40-205ENST00000571028 GMPSP49915 693 aaPredicted RBP17.18■□□□□ 0.34
CCDC40-205ENST00000571028 SUPT20HQ8NEM7 779 aa17.18■□□□□ 0.34
CCDC40-205ENST00000571028 NECTIN2Q92692 538 aa17.18■□□□□ 0.34
CCDC40-205ENST00000571028 ZNRF3Q9ULT6 936 aa17.18■□□□□ 0.34
CCDC40-205ENST00000571028 ERVV-1B6SEH8 477 aa17.17■□□□□ 0.34
CCDC40-205ENST00000571028 GPTP24298 496 aa17.17■□□□□ 0.34
CCDC40-205ENST00000571028 NCBP3Q53F19 620 aaKnown RBP17.17■□□□□ 0.34
CCDC40-205ENST00000571028 CDC37L1Q7L3B6 337 aa17.17■□□□□ 0.34
CCDC40-205ENST00000571028 ZC3H15Q8WU90 426 aaKnown RBP17.17■□□□□ 0.34
CCDC40-205ENST00000571028 TRPM7Q96QT4 1865 aa17.17■□□□□ 0.34
CCDC40-205ENST00000571028 VPS33BQ9H267 617 aa17.17■□□□□ 0.34
CCDC40-205ENST00000571028 SPINK5Q9NQ38 1064 aaPredicted RBP17.17■□□□□ 0.34
CCDC40-205ENST00000571028 CDHR2Q9BYE9 1310 aa17.17■□□□□ 0.34
CCDC40-205ENST00000571028 IBTKQ9P2D0 1353 aaPredicted RBP17.16■□□□□ 0.34
CCDC40-205ENST00000571028 RIC1Q4ADV7 1423 aa17.16■□□□□ 0.34
CCDC40-205ENST00000571028 HUNKP57058 714 aa17.16■□□□□ 0.34
CCDC40-205ENST00000571028 CXCL9Q07325 125 aa17.16■□□□□ 0.34
CCDC40-205ENST00000571028 IL16Q14005 1332 aa17.16■□□□□ 0.34
CCDC40-205ENST00000571028 MAP3K15Q6ZN16 1313 aa17.16■□□□□ 0.34
CCDC40-205ENST00000571028 SOX10P56693 466 aa17.15■□□□□ 0.34
CCDC40-205ENST00000571028 GOLGA2Q08379 1002 aa17.15■□□□□ 0.34
CCDC40-205ENST00000571028 TNIP1Q15025 636 aa17.15■□□□□ 0.34
CCDC40-205ENST00000571028 DUSP27Q5VZP5 1158 aa17.14■□□□□ 0.33
CCDC40-205ENST00000571028 DPP8Q6V1X1 898 aaPredicted RBP17.14■□□□□ 0.33
CCDC40-205ENST00000571028 CDCA7LQ96GN5 454 aa17.14■□□□□ 0.33
CCDC40-205ENST00000571028 YTHDC1Q96MU7 727 aaKnown RBP17.14■□□□□ 0.33
CCDC40-205ENST00000571028 NLRP3Q96P20 1036 aa17.14■□□□□ 0.33
CCDC40-205ENST00000571028 ZBTB3Q9H5J0 574 aa17.14■□□□□ 0.33
CCDC40-205ENST00000571028 MYH16Q9H6N6 1097 aa17.14■□□□□ 0.33
CCDC40-205ENST00000571028 ATP6V0A2Q9Y487 856 aa17.14■□□□□ 0.33
CCDC40-205ENST00000571028 KDM3BQ7LBC6 1761 aa17.14■□□□□ 0.33
CCDC40-205ENST00000571028 ZNF521Q96K83 1311 aa17.14■□□□□ 0.33
CCDC40-205ENST00000571028 H7C1D1 291 aa17.13■□□□□ 0.33
CCDC40-205ENST00000571028 RAD17O75943 681 aa17.13■□□□□ 0.33
CCDC40-205ENST00000571028 SUSD4Q5VX71 490 aa17.13■□□□□ 0.33
CCDC40-205ENST00000571028 PPP1R42Q7Z4L9 355 aa17.13■□□□□ 0.33
CCDC40-205ENST00000571028 SLC51AQ86UW1 340 aa17.13■□□□□ 0.33
CCDC40-205ENST00000571028 C8orf58Q8NAV2 365 aa17.13■□□□□ 0.33
CCDC40-205ENST00000571028 PGAP2Q9UHJ9 254 aa17.13■□□□□ 0.33
CCDC40-205ENST00000571028 FANCIQ9NVI1 1328 aa17.13■□□□□ 0.33
CCDC40-205ENST00000571028 MYL6BP14649 208 aa17.12■□□□□ 0.33
CCDC40-205ENST00000571028 SAGE1Q9NXZ1 904 aa17.12■□□□□ 0.33
CCDC40-205ENST00000571028 UBN2Q6ZU65 1347 aa17.12■□□□□ 0.33
CCDC40-205ENST00000571028 EXOSC9Q06265 439 aaKnown RBP17.11■□□□□ 0.33
CCDC40-205ENST00000571028 PRPF38BQ5VTL8 546 aaKnown RBP17.11■□□□□ 0.33
CCDC40-205ENST00000571028 TTLL7Q6ZT98 887 aa17.11■□□□□ 0.33
CCDC40-205ENST00000571028 USP48Q86UV5 1035 aa17.11■□□□□ 0.33
CCDC40-205ENST00000571028 TSPYL6Q8N831 410 aa17.11■□□□□ 0.33
CCDC40-205ENST00000571028 TRPM4Q8TD43 1214 aa17.11■□□□□ 0.33
CCDC40-205ENST00000571028 CNOT7Q9UIV1 285 aaKnown RBP17.11■□□□□ 0.33
CCDC40-205ENST00000571028 CASP8AP2Q9UKL3 1982 aa17.1■□□□□ 0.33
CCDC40-205ENST00000571028 E9PSI1 815 aa17.1■□□□□ 0.33
CCDC40-205ENST00000571028 NTSR2O95665 410 aa17.1■□□□□ 0.33
CCDC40-205ENST00000571028 PARP10Q53GL7 1025 aa17.1■□□□□ 0.33
CCDC40-205ENST00000571028 HDGFL1Q5TGJ6 251 aa17.1■□□□□ 0.33
CCDC40-205ENST00000571028 RGMBQ6NW40 437 aa17.1■□□□□ 0.33
CCDC40-205ENST00000571028 MPNDQ8N594 471 aa17.1■□□□□ 0.33
CCDC40-205ENST00000571028 C2orf69Q8N8R5 385 aa17.1■□□□□ 0.33
CCDC40-205ENST00000571028 CCDC102AQ96A19 550 aa17.1■□□□□ 0.33
CCDC40-205ENST00000571028 ZIC5Q96T25 663 aa17.1■□□□□ 0.33
CCDC40-205ENST00000571028 TNRC18O15417 2968 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-205ENST00000571028 ANXA1P04083 346 aa17.09■□□□□ 0.33
CCDC40-205ENST00000571028 HIRAP54198 1017 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-205ENST00000571028 SLFN5Q08AF3 891 aa17.09■□□□□ 0.33
CCDC40-205ENST00000571028 KIAA2012Q0VF49 1180 aa17.09■□□□□ 0.33
CCDC40-205ENST00000571028 TWISTNBQ3B726 338 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-205ENST00000571028 C3orf67Q6ZVT6 689 aa17.09■□□□□ 0.33
CCDC40-205ENST00000571028 MICALL2Q8IY33 904 aa17.09■□□□□ 0.33
CCDC40-205ENST00000571028 RTFDC1Q9BY42 306 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-205ENST00000571028 ABCC4O15439 1325 aa17.09■□□□□ 0.33
CCDC40-205ENST00000571028 TRPA1O75762 1119 aa17.08■□□□□ 0.32
CCDC40-205ENST00000571028 BBOX1O75936 387 aa17.08■□□□□ 0.32
CCDC40-205ENST00000571028 ZNF157P51786 506 aaPredicted RBP17.08■□□□□ 0.32
CCDC40-205ENST00000571028 KRT26Q7Z3Y9 468 aa17.08■□□□□ 0.32
CCDC40-205ENST00000571028 ZNF34Q8IZ26 560 aa17.08■□□□□ 0.32
CCDC40-205ENST00000571028 UTP14AQ9BVJ6 771 aaKnown RBP17.08■□□□□ 0.32
CCDC40-205ENST00000571028 GBA2Q9HCG7 927 aaPredicted RBP17.08■□□□□ 0.32
CCDC40-205ENST00000571028 KIF23Q02241 960 aaPredicted RBP17.07■□□□□ 0.32
CCDC40-205ENST00000571028 GIGYF2Q6Y7W6 1299 aaKnown RBP17.07■□□□□ 0.32
CCDC40-205ENST00000571028 SP8Q8IXZ3 490 aa17.07■□□□□ 0.32
CCDC40-205ENST00000571028 LAMB4A4D0S4 1761 aa17.07■□□□□ 0.32
CCDC40-205ENST00000571028 PROSER3Q2NL68 480 aa17.06■□□□□ 0.32
CCDC40-205ENST00000571028 DDX46Q7L014 1031 aaKnown RBP17.06■□□□□ 0.32
CCDC40-205ENST00000571028 CTU1Q7Z7A3 348 aaKnown RBP17.06■□□□□ 0.32
CCDC40-205ENST00000571028 DCPSQ96C86 337 aaKnown RBP17.06■□□□□ 0.32
CCDC40-205ENST00000571028 RNF186Q9NXI6 227 aa17.06■□□□□ 0.32
CCDC40-205ENST00000571028 CHPF2Q9P2E5 772 aa17.06■□□□□ 0.32
CCDC40-205ENST00000571028 HOXB7P09629 217 aa17.05■□□□□ 0.32
CCDC40-205ENST00000571028 AIMP1Q12904 312 aaKnown RBP17.05■□□□□ 0.32
CCDC40-205ENST00000571028 SHTN1A0MZ66 631 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms