RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-208	ENST00000570874	GIGYF1	O75420	1035 aa	Predicted RBP	4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	SCP2	P22307	547 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	HSD3B2	P26439	372 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	ABL2	P42684	1182 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	PTPN5	P54829	565 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	EVA1C	P58658	441 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	POU5F1B	Q06416	359 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	RRS1	Q15050	365 aa	Known RBP	4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	L1TD1	Q5T7N2	865 aa	Known RBP	4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	FMNL3	Q8IVF7	1028 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	C1orf131	Q8NDD1	294 aa	Known RBP	4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	TMC2	Q8TDI7	906 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	PCDH12	Q9NPG4	1184 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	PRKAG2	Q9UGJ0	569 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	EMILIN1	Q9Y6C2	1016 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	TTC21B	Q7Z4L5	1316 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	ZNF521	Q96K83	1311 aa		4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	SIPA1L3	O60292	1781 aa	Predicted RBP	4.37	□□□□□ -1.71
SMG6-208	ENST00000570874	NFAT5	O94916	1531 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	NHSL1	Q5SYE7	1610 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	LMO7	Q8WWI1	1683 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	SCN11A	Q9UI33	1791 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	CBFA2T2	O43439	604 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	ZRSR2	Q15696	482 aa	Known RBP	4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	NUTM2G	Q5VZR2	741 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	ZNF787	Q6DD87	383 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	CCSAP	Q6IQ19	270 aa	Predicted RBP	4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	FILIP1	Q7Z7B0	1213 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	ZNF467	Q7Z7K2	595 aa	Predicted RBP	4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	DRC7	Q8IY82	874 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	SLC43A3	Q8NBI5	491 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	EPAS1	Q99814	870 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	PPP1R12C	Q9BZL4	782 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	PIF1	Q9H611	641 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	ZSWIM4	Q9H7M6	989 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	NLRP2	Q9NX02	1062 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	DDX56	Q9NY93	547 aa	Known RBP	4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	POLK	Q9UBT6	870 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	SFMBT1	Q9UHJ3	866 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	ANKAR	Q7Z5J8	1434 aa		4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	MED1	Q15648	1581 aa	Predicted RBP	4.36	□□□□□ -1.71
SMG6-208	ENST00000570874	LRRC37A3	O60309	1634 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	FAM208A	Q9UK61	1670 aa	Known RBP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	CAMTA1	Q9Y6Y1	1673 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	SHANK3	Q9BYB0	1731 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	KDM3B	Q7LBC6	1761 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	WNK3	Q9BYP7	1800 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	SOWAHD	A6NJG2	315 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	TCERG1	O14776	1098 aa	Known RBP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	SCAMP3	O14828	347 aa	Known RBP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	TIMM44	O43615	452 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	FAM200B	P0CF97	657 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	U2AF1L5	P0DN76	240 aa	Predicted RBP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	HDLBP	Q00341	1268 aa	Known RBP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	U2AF1	Q01081	240 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	UBE4A	Q14139	1066 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	DHX8	Q14562	1220 aa	Known RBP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	BMS1	Q14692	1282 aa	Known RBP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	SOGA3	Q5TF21	947 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	HDGFL1	Q5TGJ6	251 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	NT5DC4	Q86YG4	428 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	EGFL6	Q8IUX8	553 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	PROCA1	Q8NCQ7	364 aa	Predicted RBP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	JDP2	Q8WYK2	163 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	IL17RA	Q96F46	866 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	DDX27	Q96GQ7	796 aa	Known RBP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	TINF2	Q9BSI4	451 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	ABCF2	Q9UG63	623 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	ANAPC4	Q9UJX5	808 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	PDZRN3	Q9UPQ7	1066 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	TBC1D2B	Q9UPU7	963 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	PNPLA6	Q8IY17	1366 aa		4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	N4BP2	Q86UW6	1770 aa	Predicted RBP	4.35	□□□□□ -1.71
SMG6-208	ENST00000570874	TK2	O00142	265 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	RRP9	O43818	475 aa	Known RBP	4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	PLIN1	O60240	522 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	HMOX1	P09601	288 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	COL6A1	P12109	1028 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	LMOD1	P29536	600 aa	Predicted RBP	4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	RFC5	P40937	340 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	PSEN1	P49768	467 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	IRX3	P78415	501 aa	Predicted RBP	4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	RASSF7	Q02833	373 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	SLFN5	Q08AF3	891 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	SF3B2	Q13435	895 aa	Known RBP	4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	MFSD10	Q14728	455 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	MAPRE1	Q15691	268 aa	Known RBP	4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	HSP90AB3P	Q58FF7	597 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	GJC2	Q5T442	439 aa	Predicted RBP	4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	DUSP27	Q5VZP5	1158 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	ZNF746	Q6NUN9	644 aa	Predicted RBP	4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	FBXO33	Q7Z6M2	555 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	JAZF1	Q86VZ6	243 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	RPUSD2	Q8IZ73	545 aa	Known RBP	4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	TCP11L2	Q8N4U5	519 aa		4.34	□□□□□ -1.71
SMG6-208	ENST00000570874	PAF1	Q8N7H5	531 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms