RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 FTSJ3Q8IY81 847 aaKnown RBP8.15□□□□□ -1.1
VPS53-209ENST00000570771 TMEM57Q8N5G2 664 aa8.15□□□□□ -1.1
VPS53-209ENST00000570771 DNAAF4Q8WXU2 420 aa8.15□□□□□ -1.1
VPS53-209ENST00000570771 KAZALD1Q96I82 304 aa8.15□□□□□ -1.1
VPS53-209ENST00000570771 METTL22Q9BUU2 404 aaPredicted RBP8.15□□□□□ -1.1
VPS53-209ENST00000570771 CHMP4BQ9H444 224 aaKnown RBP8.15□□□□□ -1.1
VPS53-209ENST00000570771 NIP7Q9Y221 180 aaKnown RBP eCLIP8.15□□□□□ -1.1
VPS53-209ENST00000570771 DDX60Q8IY21 1712 aaKnown RBP8.15□□□□□ -1.11
VPS53-209ENST00000570771 A0A087WZG4 1122 aa8.14□□□□□ -1.11
VPS53-209ENST00000570771 ZPR1O75312 459 aa8.14□□□□□ -1.11
VPS53-209ENST00000570771 DDX58O95786 925 aaKnown RBP8.14□□□□□ -1.11
VPS53-209ENST00000570771 ERFEQ4G0M1 354 aa8.14□□□□□ -1.11
VPS53-209ENST00000570771 ATF7IPQ6VMQ6 1270 aa8.14□□□□□ -1.11
VPS53-209ENST00000570771 RIC3Q7Z5B4 369 aa8.14□□□□□ -1.11
VPS53-209ENST00000570771 NPM2Q86SE8 214 aaKnown RBP8.14□□□□□ -1.11
VPS53-209ENST00000570771 WWC3Q9ULE0 1092 aa8.14□□□□□ -1.11
VPS53-209ENST00000570771 SERPINB2P05120 415 aa8.13□□□□□ -1.11
VPS53-209ENST00000570771 NBPF7P0C2Y1 421 aaPredicted RBP8.13□□□□□ -1.11
VPS53-209ENST00000570771 HCLS1P14317 486 aaPredicted RBP8.13□□□□□ -1.11
VPS53-209ENST00000570771 CHRNA5P30532 468 aa8.13□□□□□ -1.11
VPS53-209ENST00000570771 IRX6P78412 446 aaPredicted RBP8.13□□□□□ -1.11
VPS53-209ENST00000570771 AAMPQ13685 434 aa8.13□□□□□ -1.11
VPS53-209ENST00000570771 SLC4A10Q6U841 1118 aa8.13□□□□□ -1.11
VPS53-209ENST00000570771 DZIP1LQ8IYY4 767 aaKnown RBP8.13□□□□□ -1.11
VPS53-209ENST00000570771 FLAD1Q8NFF5 587 aa8.13□□□□□ -1.11
VPS53-209ENST00000570771 FAM89AQ96GI7 184 aa8.13□□□□□ -1.11
VPS53-209ENST00000570771 MEIS3Q99687 375 aa8.13□□□□□ -1.11
VPS53-209ENST00000570771 KRTAP3-3Q9BYR6 98 aa8.13□□□□□ -1.11
VPS53-209ENST00000570771 KRTAP3-2Q9BYR7 98 aa8.13□□□□□ -1.11
VPS53-209ENST00000570771 KCNA3P22001 575 aa8.12□□□□□ -1.11
VPS53-209ENST00000570771 GCKRQ14397 625 aa8.12□□□□□ -1.11
VPS53-209ENST00000570771 OLFM4Q6UX06 510 aa8.12□□□□□ -1.11
VPS53-209ENST00000570771 CLEC4GQ6UXB4 293 aa8.12□□□□□ -1.11
VPS53-209ENST00000570771 SLC16A10Q8TF71 515 aa8.12□□□□□ -1.11
VPS53-209ENST00000570771 SUCLG2Q96I99 432 aa8.12□□□□□ -1.11
VPS53-209ENST00000570771 USP44Q9H0E7 712 aa8.12□□□□□ -1.11
VPS53-209ENST00000570771 C1orf115Q9H7X2 142 aa8.12□□□□□ -1.11
VPS53-209ENST00000570771 IBTKQ9P2D0 1353 aaPredicted RBP8.11□□□□□ -1.11
VPS53-209ENST00000570771 KIF13BQ9NQT8 1826 aa8.11□□□□□ -1.11
VPS53-209ENST00000570771 TRIM28Q13263 835 aaKnown RBP8.11□□□□□ -1.11
VPS53-209ENST00000570771 INTS3Q68E01 1043 aaKnown RBP8.11□□□□□ -1.11
VPS53-209ENST00000570771 UBE3BQ7Z3V4 1068 aa8.11□□□□□ -1.11
VPS53-209ENST00000570771 NLGN1Q8N2Q7 840 aa8.11□□□□□ -1.11
VPS53-209ENST00000570771 ANKRD44Q8N8A2 993 aa8.11□□□□□ -1.11
VPS53-209ENST00000570771 LINS1Q8NG48 757 aa8.11□□□□□ -1.11
VPS53-209ENST00000570771 FHDC1Q9C0D6 1143 aaPredicted RBP8.11□□□□□ -1.11
VPS53-209ENST00000570771 COG6Q9Y2V7 657 aa8.11□□□□□ -1.11
VPS53-209ENST00000570771 LAMB2P55268 1798 aa8.11□□□□□ -1.11
VPS53-209ENST00000570771 UTYO14607 1347 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 H7C1W4 665 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 RGL2O15211 777 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 PLCG2P16885 1265 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 CCT4P50991 539 aaKnown RBP8.1□□□□□ -1.11
VPS53-209ENST00000570771 FOXO4P98177 505 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 NBPF5PQ86XG9 351 aaPredicted RBP8.1□□□□□ -1.11
VPS53-209ENST00000570771 CNBD1Q8NA66 436 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 CCDC85AQ96PX6 553 aaPredicted RBP8.1□□□□□ -1.11
VPS53-209ENST00000570771 SETDB2Q96T68 719 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 SPON1Q9HCB6 807 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 CWC25Q9NXE8 425 aaPredicted RBP8.1□□□□□ -1.11
VPS53-209ENST00000570771 DDX19BQ9UMR2 479 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 GTF3C3Q9Y5Q9 886 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 RIC1Q4ADV7 1423 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 SNED1Q8TER0 1413 aa8.1□□□□□ -1.11
VPS53-209ENST00000570771 A0A0G2JLW4 131 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 KLRG2A4D1S0 409 aaPredicted RBP8.09□□□□□ -1.11
VPS53-209ENST00000570771 WTIPA6NIX2 430 aaPredicted RBP8.09□□□□□ -1.11
VPS53-209ENST00000570771 PCCAP05165 728 aaPredicted RBP8.09□□□□□ -1.11
VPS53-209ENST00000570771 DPEP1P16444 411 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 NEXNQ0ZGT2 675 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 MVPQ14764 893 aaKnown RBP8.09□□□□□ -1.11
VPS53-209ENST00000570771 ITPRIPQ8IWB1 547 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 CCDC191Q8NCU4 936 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 CRBNQ96SW2 442 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 UTP14AQ9BVJ6 771 aaKnown RBP8.09□□□□□ -1.11
VPS53-209ENST00000570771 SRCIN1Q9C0H9 1055 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 SEC31BQ9NQW1 1179 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 TRMT112Q9UI30 125 aaKnown RBP8.09□□□□□ -1.11
VPS53-209ENST00000570771 HDAC5Q9UQL6 1122 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 ZNF652Q9Y2D9 606 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 PARP3Q9Y6F1 533 aa8.09□□□□□ -1.11
VPS53-209ENST00000570771 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.09□□□□□ -1.11
VPS53-209ENST00000570771 GRM8O00222 908 aa8.08□□□□□ -1.12
VPS53-209ENST00000570771 IRS4O14654 1257 aaPredicted RBP8.08□□□□□ -1.12
VPS53-209ENST00000570771 FAM161AQ3B820 660 aa8.08□□□□□ -1.12
VPS53-209ENST00000570771 CRY2Q49AN0 593 aa8.08□□□□□ -1.12
VPS53-209ENST00000570771 PARP10Q53GL7 1025 aa8.08□□□□□ -1.12
VPS53-209ENST00000570771 KLHL34Q8N239 644 aa8.08□□□□□ -1.12
VPS53-209ENST00000570771 ZBTB38Q8NAP3 1195 aaPredicted RBP8.08□□□□□ -1.12
VPS53-209ENST00000570771 BICC1Q9H694 974 aaKnown RBP8.08□□□□□ -1.12
VPS53-209ENST00000570771 DUOX1Q9NRD9 1551 aa8.08□□□□□ -1.12
VPS53-209ENST00000570771 SH3TC1Q8TE82 1336 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 CDHR2Q9BYE9 1310 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 TAF1P21675 1872 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 ZBTB7BO15156 539 aaPredicted RBP8.07□□□□□ -1.12
VPS53-209ENST00000570771 ALDH1L1O75891 902 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 YBX3P16989 372 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS53-209ENST00000570771 PRELPP51888 382 aa8.07□□□□□ -1.12
VPS53-209ENST00000570771 IRX5P78411 483 aaPredicted RBP8.07□□□□□ -1.12
VPS53-209ENST00000570771 HSP90AB3PQ58FF7 597 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms