RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 TTLL7Q6ZT98 887 aa18.03■□□□□ 0.48
CLN3-235ENST00000568497 TSPYL6Q8N831 410 aa18.03■□□□□ 0.48
CLN3-235ENST00000568497 C8orf58Q8NAV2 365 aa18.03■□□□□ 0.48
CLN3-235ENST00000568497 GPRC5DQ9NZD1 345 aa18.03■□□□□ 0.48
CLN3-235ENST00000568497 CCER2I3L3R5 266 aa18.02■□□□□ 0.48
CLN3-235ENST00000568497 HUNKP57058 714 aa18.02■□□□□ 0.48
CLN3-235ENST00000568497 RPGRQ92834 1020 aaKnown RBP18.02■□□□□ 0.48
CLN3-235ENST00000568497 LAMB4A4D0S4 1761 aa18.02■□□□□ 0.47
CLN3-235ENST00000568497 PPIP5K2O43314 1243 aa18.01■□□□□ 0.47
CLN3-235ENST00000568497 CRY2Q49AN0 593 aa18.01■□□□□ 0.47
CLN3-235ENST00000568497 DUSP27Q5VZP5 1158 aa18.01■□□□□ 0.47
CLN3-235ENST00000568497 IFT57Q9NWB7 429 aa18.01■□□□□ 0.47
CLN3-235ENST00000568497 PDIA6Q15084 440 aa18■□□□□ 0.47
CLN3-235ENST00000568497 HLFQ16534 295 aa18■□□□□ 0.47
CLN3-235ENST00000568497 AIMP1Q12904 312 aaKnown RBP17.99■□□□□ 0.47
CLN3-235ENST00000568497 CHPF2Q9P2E5 772 aa17.99■□□□□ 0.47
CLN3-235ENST00000568497 TRPA1O75762 1119 aa17.98■□□□□ 0.47
CLN3-235ENST00000568497 GMPSP49915 693 aaPredicted RBP17.98■□□□□ 0.47
CLN3-235ENST00000568497 GNAI1P63096 354 aa17.98■□□□□ 0.47
CLN3-235ENST00000568497 AOC3Q16853 763 aa17.98■□□□□ 0.47
CLN3-235ENST00000568497 CDC37L1Q7L3B6 337 aa17.98■□□□□ 0.47
CLN3-235ENST00000568497 NUTM1Q86Y26 1132 aa17.98■□□□□ 0.47
CLN3-235ENST00000568497 BCL2L13Q9BXK5 485 aa17.98■□□□□ 0.47
CLN3-235ENST00000568497 ZBTB3Q9H5J0 574 aa17.98■□□□□ 0.47
CLN3-235ENST00000568497 SAGE1Q9NXZ1 904 aa17.98■□□□□ 0.47
CLN3-235ENST00000568497 PGAP2Q9UHJ9 254 aa17.98■□□□□ 0.47
CLN3-235ENST00000568497 ABCC12Q96J65 1359 aa17.98■□□□□ 0.47
CLN3-235ENST00000568497 PPEF1O14829 653 aaPredicted RBP17.97■□□□□ 0.47
CLN3-235ENST00000568497 GCC1Q96CN9 775 aa17.97■□□□□ 0.47
CLN3-235ENST00000568497 TMX4Q9H1E5 349 aaPredicted RBP17.97■□□□□ 0.47
CLN3-235ENST00000568497 FANCIQ9NVI1 1328 aa17.97■□□□□ 0.47
CLN3-235ENST00000568497 HOXA10P31260 410 aaPredicted RBP17.96■□□□□ 0.47
CLN3-235ENST00000568497 CCDC27Q2M243 656 aa17.96■□□□□ 0.47
CLN3-235ENST00000568497 HDGFL1Q5TGJ6 251 aa17.96■□□□□ 0.47
CLN3-235ENST00000568497 LRP10Q7Z4F1 713 aa17.96■□□□□ 0.47
CLN3-235ENST00000568497 CTU1Q7Z7A3 348 aaKnown RBP17.96■□□□□ 0.47
CLN3-235ENST00000568497 SLC51AQ86UW1 340 aa17.96■□□□□ 0.47
CLN3-235ENST00000568497 CDCA7LQ96GN5 454 aa17.96■□□□□ 0.47
CLN3-235ENST00000568497 NYXQ9GZU5 481 aa17.96■□□□□ 0.47
CLN3-235ENST00000568497 VPS33BQ9H267 617 aa17.96■□□□□ 0.47
CLN3-235ENST00000568497 KIF23Q02241 960 aaPredicted RBP17.95■□□□□ 0.46
CLN3-235ENST00000568497 CXCL9Q07325 125 aa17.95■□□□□ 0.46
CLN3-235ENST00000568497 RGMBQ6NW40 437 aa17.95■□□□□ 0.46
CLN3-235ENST00000568497 USP48Q86UV5 1035 aa17.95■□□□□ 0.46
CLN3-235ENST00000568497 XAGE3Q8WTP9 111 aa17.95■□□□□ 0.46
CLN3-235ENST00000568497 ZC3H15Q8WU90 426 aaKnown RBP17.95■□□□□ 0.46
CLN3-235ENST00000568497 BABAM1Q9NWV8 329 aa17.95■□□□□ 0.46
CLN3-235ENST00000568497 AKAP11Q9UKA4 1901 aa17.95■□□□□ 0.46
CLN3-235ENST00000568497 GPTP24298 496 aa17.94■□□□□ 0.46
CLN3-235ENST00000568497 EXOSC9Q06265 439 aaKnown RBP17.94■□□□□ 0.46
CLN3-235ENST00000568497 TRPM4Q8TD43 1214 aa17.94■□□□□ 0.46
CLN3-235ENST00000568497 RBM17Q96I25 401 aaKnown RBP17.94■□□□□ 0.46
CLN3-235ENST00000568497 RNF186Q9NXI6 227 aa17.94■□□□□ 0.46
CLN3-235ENST00000568497 ZNRF3Q9ULT6 936 aa17.94■□□□□ 0.46
CLN3-235ENST00000568497 RIC1Q4ADV7 1423 aa17.93■□□□□ 0.46
CLN3-235ENST00000568497 ZNF157P51786 506 aaPredicted RBP17.93■□□□□ 0.46
CLN3-235ENST00000568497 CALD1Q05682 793 aaKnown RBP17.93■□□□□ 0.46
CLN3-235ENST00000568497 COPS6Q7L5N1 327 aa17.93■□□□□ 0.46
CLN3-235ENST00000568497 CRAMP1Q96RY5 1269 aa17.93■□□□□ 0.46
CLN3-235ENST00000568497 HPS5Q9UPZ3 1129 aa17.93■□□□□ 0.46
CLN3-235ENST00000568497 FAM155AB1AL88 458 aaPredicted RBP17.92■□□□□ 0.46
CLN3-235ENST00000568497 HIRAP54198 1017 aaPredicted RBP17.92■□□□□ 0.46
CLN3-235ENST00000568497 DLK2Q6UY11 383 aa17.92■□□□□ 0.46
CLN3-235ENST00000568497 CCDC102AQ96A19 550 aa17.92■□□□□ 0.46
CLN3-235ENST00000568497 PHAXQ9H814 394 aaKnown RBP17.92■□□□□ 0.46
CLN3-235ENST00000568497 ZNF521Q96K83 1311 aa17.92■□□□□ 0.46
CLN3-235ENST00000568497 CDHR2Q9BYE9 1310 aa17.92■□□□□ 0.46
CLN3-235ENST00000568497 RAD17O75943 681 aa17.91■□□□□ 0.46
CLN3-235ENST00000568497 C2orf69Q8N8R5 385 aa17.91■□□□□ 0.46
CLN3-235ENST00000568497 GBA2Q9HCG7 927 aaPredicted RBP17.91■□□□□ 0.46
CLN3-235ENST00000568497 H7C1D1 291 aa17.9■□□□□ 0.46
CLN3-235ENST00000568497 G2E3Q7L622 706 aa17.9■□□□□ 0.46
CLN3-235ENST00000568497 WDR63Q8IWG1 891 aa17.9■□□□□ 0.46
CLN3-235ENST00000568497 MAP3K15Q6ZN16 1313 aa17.9■□□□□ 0.46
CLN3-235ENST00000568497 TNIP1Q15025 636 aa17.89■□□□□ 0.45
CLN3-235ENST00000568497 TWISTNBQ3B726 338 aaPredicted RBP17.89■□□□□ 0.45
CLN3-235ENST00000568497 KIF6Q6ZMV9 814 aa17.89■□□□□ 0.45
CLN3-235ENST00000568497 KRT26Q7Z3Y9 468 aa17.89■□□□□ 0.45
CLN3-235ENST00000568497 SUPT20HQ8NEM7 779 aa17.89■□□□□ 0.45
CLN3-235ENST00000568497 CNOT7Q9UIV1 285 aaKnown RBP17.89■□□□□ 0.45
CLN3-235ENST00000568497 HDAC9Q9UKV0 1011 aa17.89■□□□□ 0.45
CLN3-235ENST00000568497 IBTKQ9P2D0 1353 aaPredicted RBP17.89■□□□□ 0.45
CLN3-235ENST00000568497 SHTN1A0MZ66 631 aa17.88■□□□□ 0.45
CLN3-235ENST00000568497 ERVV-1B6SEH8 477 aa17.88■□□□□ 0.45
CLN3-235ENST00000568497 HABP4Q5JVS0 413 aaKnown RBP17.88■□□□□ 0.45
CLN3-235ENST00000568497 MICALL2Q8IY33 904 aa17.88■□□□□ 0.45
CLN3-235ENST00000568497 IL16Q14005 1332 aa17.88■□□□□ 0.45
CLN3-235ENST00000568497 NUP98P52948 1817 aa17.87■□□□□ 0.45
CLN3-235ENST00000568497 RTFDC1Q9BY42 306 aaPredicted RBP17.87■□□□□ 0.45
CLN3-235ENST00000568497 UBN2Q6ZU65 1347 aa17.87■□□□□ 0.45
CLN3-235ENST00000568497 HNRNPUQ00839 825 aaKnown RBP eCLIP17.86■□□□□ 0.45
CLN3-235ENST00000568497 GOLGA2Q08379 1002 aa17.86■□□□□ 0.45
CLN3-235ENST00000568497 DPP8Q6V1X1 898 aaPredicted RBP17.86■□□□□ 0.45
CLN3-235ENST00000568497 CSRNP1Q96S65 589 aa17.86■□□□□ 0.45
CLN3-235ENST00000568497 ATP6V0A2Q9Y487 856 aa17.86■□□□□ 0.45
CLN3-235ENST00000568497 ADM5C9JUS6 153 aa17.85■□□□□ 0.45
CLN3-235ENST00000568497 ATP5J2-PTCD1G3V325 749 aa17.85■□□□□ 0.45
CLN3-235ENST00000568497 VAMP4O75379 141 aa17.85■□□□□ 0.45
CLN3-235ENST00000568497 SLC10A3P09131 477 aa17.85■□□□□ 0.45
CLN3-235ENST00000568497 PKN2Q16513 984 aaKnown RBP17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms