RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 SUSD4Q5VX71 490 aa22.43■■□□□ 1.18
CLK3-217ENST00000566126 DPP8Q6V1X1 898 aaPredicted RBP22.43■■□□□ 1.18
CLK3-217ENST00000566126 CENPFP49454 3210 aa22.43■■□□□ 1.18
CLK3-217ENST00000566126 GPTP24298 496 aa22.42■■□□□ 1.18
CLK3-217ENST00000566126 DPF2Q92785 391 aa22.42■■□□□ 1.18
CLK3-217ENST00000566126 DCPSQ96C86 337 aaKnown RBP22.42■■□□□ 1.18
CLK3-217ENST00000566126 TMX4Q9H1E5 349 aaPredicted RBP22.42■■□□□ 1.18
CLK3-217ENST00000566126 BRCA2P51587 3418 aa22.41■■□□□ 1.18
CLK3-217ENST00000566126 ABCC4O15439 1325 aa22.41■■□□□ 1.18
CLK3-217ENST00000566126 ERVV-1B6SEH8 477 aa22.41■■□□□ 1.18
CLK3-217ENST00000566126 POTEFA5A3E0 1075 aa22.4■■□□□ 1.18
CLK3-217ENST00000566126 NTSR2O95665 410 aa22.4■■□□□ 1.18
CLK3-217ENST00000566126 MPNDQ8N594 471 aa22.4■■□□□ 1.18
CLK3-217ENST00000566126 DUOX1Q9NRD9 1551 aa22.4■■□□□ 1.18
CLK3-217ENST00000566126 LAMB4A4D0S4 1761 aa22.4■■□□□ 1.18
CLK3-217ENST00000566126 MAP3K15Q6ZN16 1313 aa22.39■■□□□ 1.18
CLK3-217ENST00000566126 GPR25O00155 361 aa22.39■■□□□ 1.17
CLK3-217ENST00000566126 AMER1Q5JTC6 1135 aaPredicted RBP22.39■■□□□ 1.17
CLK3-217ENST00000566126 KNSTRNQ9Y448 316 aa22.39■■□□□ 1.17
CLK3-217ENST00000566126 RBBP6Q7Z6E9 1792 aaKnown RBP22.39■■□□□ 1.17
CLK3-217ENST00000566126 PAPPA2Q9BXP8 1791 aa22.39■■□□□ 1.17
CLK3-217ENST00000566126 PSMD14O00487 310 aa22.38■■□□□ 1.17
CLK3-217ENST00000566126 DLL1O00548 723 aa22.38■■□□□ 1.17
CLK3-217ENST00000566126 NOM1Q5C9Z4 860 aaKnown RBP22.38■■□□□ 1.17
CLK3-217ENST00000566126 RBM26Q5T8P6 1007 aaKnown RBP22.38■■□□□ 1.17
CLK3-217ENST00000566126 SP8Q8IXZ3 490 aa22.38■■□□□ 1.17
CLK3-217ENST00000566126 NGEFQ8N5V2 710 aa22.38■■□□□ 1.17
CLK3-217ENST00000566126 CDCA5Q96FF9 252 aa22.38■■□□□ 1.17
CLK3-217ENST00000566126 LAMB2P55268 1798 aa22.38■■□□□ 1.17
CLK3-217ENST00000566126 COL3A1P02461 1466 aaPredicted RBP22.37■■□□□ 1.17
CLK3-217ENST00000566126 TTLL7Q6ZT98 887 aa22.37■■□□□ 1.17
CLK3-217ENST00000566126 NLRP3Q96P20 1036 aa22.37■■□□□ 1.17
CLK3-217ENST00000566126 COLQQ9Y215 455 aaPredicted RBP22.37■■□□□ 1.17
CLK3-217ENST00000566126 KIAA0100Q14667 2235 aaKnown RBP22.37■■□□□ 1.17
CLK3-217ENST00000566126 TRIOBPQ9H2D6 2365 aa22.36■■□□□ 1.17
CLK3-217ENST00000566126 ZNF34Q8IZ26 560 aa22.36■■□□□ 1.17
CLK3-217ENST00000566126 ASTN2O75129 1339 aaPredicted RBP22.35■■□□□ 1.17
CLK3-217ENST00000566126 PHACTR3Q96KR7 559 aa22.35■■□□□ 1.17
CLK3-217ENST00000566126 GGA3Q9NZ52 723 aa22.35■■□□□ 1.17
CLK3-217ENST00000566126 TAF1P21675 1872 aa22.34■■□□□ 1.17
CLK3-217ENST00000566126 BBOX1O75936 387 aa22.34■■□□□ 1.17
CLK3-217ENST00000566126 SULF1Q8IWU6 871 aa22.34■■□□□ 1.17
CLK3-217ENST00000566126 ANKRD36CQ5JPF3 1778 aa22.34■■□□□ 1.17
CLK3-217ENST00000566126 A0A0C4DFX4 3053 aa22.33■■□□□ 1.17
CLK3-217ENST00000566126 U2SURPO15042 1029 aaKnown RBP22.33■■□□□ 1.17
CLK3-217ENST00000566126 R3HDMLQ9H3Y0 253 aa22.33■■□□□ 1.17
CLK3-217ENST00000566126 TM4SF4P48230 202 aa22.32■■□□□ 1.16
CLK3-217ENST00000566126 KIF4BQ2VIQ3 1234 aa22.32■■□□□ 1.16
CLK3-217ENST00000566126 SLC10A5Q5PT55 438 aa22.32■■□□□ 1.16
CLK3-217ENST00000566126 ZBTB3Q9H5J0 574 aa22.32■■□□□ 1.16
CLK3-217ENST00000566126 CEP290O15078 2479 aa22.32■■□□□ 1.16
CLK3-217ENST00000566126 LRRC37AA6NMS7 1700 aa22.31■■□□□ 1.16
CLK3-217ENST00000566126 FKTNO75072 461 aa22.31■■□□□ 1.16
CLK3-217ENST00000566126 RPS12P25398 132 aaKnown RBP22.31■■□□□ 1.16
CLK3-217ENST00000566126 FKBP1BP68106 108 aa22.31■■□□□ 1.16
CLK3-217ENST00000566126 KIF6Q6ZMV9 814 aa22.31■■□□□ 1.16
CLK3-217ENST00000566126 MOB2Q70IA6 237 aa22.31■■□□□ 1.16
CLK3-217ENST00000566126 MCM10Q7L590 875 aa22.31■■□□□ 1.16
CLK3-217ENST00000566126 DBNDD1Q9H9R9 158 aa22.31■■□□□ 1.16
CLK3-217ENST00000566126 KCNQ5Q9NR82 932 aa22.31■■□□□ 1.16
CLK3-217ENST00000566126 RTL9Q8NET4 1388 aa22.3■■□□□ 1.16
CLK3-217ENST00000566126 INTS3Q68E01 1043 aaKnown RBP22.3■■□□□ 1.16
CLK3-217ENST00000566126 PPP1R42Q7Z4L9 355 aa22.3■■□□□ 1.16
CLK3-217ENST00000566126 CFHR5Q9BXR6 569 aa22.29■■□□□ 1.16
CLK3-217ENST00000566126 GIGYF2Q6Y7W6 1299 aaKnown RBP22.28■■□□□ 1.16
CLK3-217ENST00000566126 SCN9AQ15858 1988 aa22.28■■□□□ 1.16
CLK3-217ENST00000566126 CUL9Q8IWT3 2517 aa22.27■■□□□ 1.16
CLK3-217ENST00000566126 EN2P19622 333 aaPredicted RBP22.27■■□□□ 1.16
CLK3-217ENST00000566126 DDX60Q8IY21 1712 aaKnown RBP22.27■■□□□ 1.16
CLK3-217ENST00000566126 RRP7AQ9Y3A4 280 aaKnown RBP22.27■■□□□ 1.16
CLK3-217ENST00000566126 COL6A3P12111 3177 aa22.26■■□□□ 1.15
CLK3-217ENST00000566126 UBE2Q2LH0YL09 131 aa22.26■■□□□ 1.15
CLK3-217ENST00000566126 PRKAR2BP31323 418 aa22.26■■□□□ 1.15
CLK3-217ENST00000566126 DCTN1Q14203 1278 aa22.26■■□□□ 1.15
CLK3-217ENST00000566126 WASHC4Q2M389 1173 aa22.26■■□□□ 1.15
CLK3-217ENST00000566126 PARP10Q53GL7 1025 aa22.26■■□□□ 1.15
CLK3-217ENST00000566126 ANGEL2Q5VTE6 544 aaKnown RBP22.26■■□□□ 1.15
CLK3-217ENST00000566126 MYL6BP14649 208 aa22.25■■□□□ 1.15
CLK3-217ENST00000566126 GRAPQ13588 217 aa22.25■■□□□ 1.15
CLK3-217ENST00000566126 SLC17A8Q8NDX2 589 aa22.25■■□□□ 1.15
CLK3-217ENST00000566126 GRAPLQ8TC17 118 aaPredicted RBP22.25■■□□□ 1.15
CLK3-217ENST00000566126 UTP14AQ9BVJ6 771 aaKnown RBP22.25■■□□□ 1.15
CLK3-217ENST00000566126 ECE2O60344 883 aa22.24■■□□□ 1.15
CLK3-217ENST00000566126 OTOP1Q7RTM1 612 aa22.24■■□□□ 1.15
CLK3-217ENST00000566126 RSPH6AQ9H0K4 717 aa22.24■■□□□ 1.15
CLK3-217ENST00000566126 MIS18AQ9NYP9 233 aa22.24■■□□□ 1.15
CLK3-217ENST00000566126 TRIM17Q9Y577 477 aa22.24■■□□□ 1.15
CLK3-217ENST00000566126 RANBP2P49792 3224 aaKnown RBP22.23■■□□□ 1.15
CLK3-217ENST00000566126 RIMBP2O15034 1052 aa22.23■■□□□ 1.15
CLK3-217ENST00000566126 HSPA5P11021 654 aaKnown RBP22.23■■□□□ 1.15
CLK3-217ENST00000566126 MKRN3Q13064 507 aaKnown RBP22.23■■□□□ 1.15
CLK3-217ENST00000566126 SCARF1Q14162 830 aa22.23■■□□□ 1.15
CLK3-217ENST00000566126 DDX46Q7L014 1031 aaKnown RBP22.23■■□□□ 1.15
CLK3-217ENST00000566126 OTUD5Q96G74 571 aa22.23■■□□□ 1.15
CLK3-217ENST00000566126 HCLS1P14317 486 aaPredicted RBP22.22■■□□□ 1.15
CLK3-217ENST00000566126 RTF1Q92541 710 aaKnown RBP22.22■■□□□ 1.15
CLK3-217ENST00000566126 KDM3BQ7LBC6 1761 aa22.21■■□□□ 1.15
CLK3-217ENST00000566126 VIL1P09327 827 aaKnown RBP22.21■■□□□ 1.15
CLK3-217ENST00000566126 DOK7Q18PE1 504 aa22.21■■□□□ 1.15
CLK3-217ENST00000566126 POLLQ9UGP5 575 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms