RNA–Protein interactions for RNA: ENST00000565379.1

NME3-208, Transcript of NME/NM23 nucleoside diphosphate kinase 3, human

TSL 2

Gene NME3, Length 911 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NME3-208	ENST00000565379	RPGR	Q92834	1020 aa	Known RBP	32.84	■■■□□ 2.85
NME3-208	ENST00000565379	POTEC	B2RU33	542 aa		32.83	■■■□□ 2.85
NME3-208	ENST00000565379	ALDH1B1	P30837	517 aa		32.83	■■■□□ 2.85
NME3-208	ENST00000565379	HOXA10	P31260	410 aa	Predicted RBP	32.83	■■■□□ 2.85
NME3-208	ENST00000565379	HTRA3	P83110	453 aa		32.83	■■■□□ 2.85
NME3-208	ENST00000565379	LINS1	Q8NG48	757 aa		32.83	■■■□□ 2.85
NME3-208	ENST00000565379	KLRG1	Q96E93	195 aa		32.83	■■■□□ 2.85
NME3-208	ENST00000565379	FKBP4	Q02790	459 aa	Known RBP eCLIP	32.82	■■■□□ 2.84
NME3-208	ENST00000565379	CCDC191	Q8NCU4	936 aa		32.82	■■■□□ 2.84
NME3-208	ENST00000565379	RNF123	Q5XPI4	1314 aa		32.81	■■■□□ 2.84
NME3-208	ENST00000565379		F6X3S4	739 aa		32.81	■■■□□ 2.84
NME3-208	ENST00000565379	MS4A1	P11836	297 aa		32.81	■■■□□ 2.84
NME3-208	ENST00000565379	HCLS1	P14317	486 aa	Predicted RBP	32.81	■■■□□ 2.84
NME3-208	ENST00000565379	LAMB2	P55268	1798 aa		32.79	■■■□□ 2.84
NME3-208	ENST00000565379	SLC10A5	Q5PT55	438 aa		32.79	■■■□□ 2.84
NME3-208	ENST00000565379	BEND3	Q5T5X7	828 aa		32.79	■■■□□ 2.84
NME3-208	ENST00000565379	SLC4A10	Q6U841	1118 aa		32.79	■■■□□ 2.84
NME3-208	ENST00000565379	ATP5J2-PTCD1	G3V325	749 aa		32.78	■■■□□ 2.84
NME3-208	ENST00000565379	ALDH1L1	O75891	902 aa		32.78	■■■□□ 2.84
NME3-208	ENST00000565379	DDN	O94850	711 aa	Predicted RBP	32.78	■■■□□ 2.84
NME3-208	ENST00000565379	TRIM27	P14373	513 aa		32.78	■■■□□ 2.84
NME3-208	ENST00000565379	CWC25	Q9NXE8	425 aa	Predicted RBP	32.78	■■■□□ 2.84
NME3-208	ENST00000565379	CCT4	P50991	539 aa	Known RBP	32.77	■■■□□ 2.84
NME3-208	ENST00000565379	JMY	Q8N9B5	988 aa		32.77	■■■□□ 2.84
NME3-208	ENST00000565379	RBM17	Q96I25	401 aa	Known RBP	32.77	■■■□□ 2.84
NME3-208	ENST00000565379	SRCIN1	Q9C0H9	1055 aa		32.77	■■■□□ 2.84
NME3-208	ENST00000565379	TRMT112	Q9UI30	125 aa	Known RBP	32.77	■■■□□ 2.84
NME3-208	ENST00000565379	ZNF541	Q9H0D2	1346 aa		32.77	■■■□□ 2.84
NME3-208	ENST00000565379	COL4A5	P29400	1685 aa		32.76	■■■□□ 2.84
NME3-208	ENST00000565379	NEURL1B	A8MQ27	555 aa		32.76	■■■□□ 2.83
NME3-208	ENST00000565379	IGKV5-2	P06315	115 aa		32.76	■■■□□ 2.83
NME3-208	ENST00000565379	RTKN2	Q8IZC4	609 aa		32.76	■■■□□ 2.83
NME3-208	ENST00000565379	NLRP3	Q96P20	1036 aa		32.76	■■■□□ 2.83
NME3-208	ENST00000565379	CRAMP1	Q96RY5	1269 aa		32.76	■■■□□ 2.83
NME3-208	ENST00000565379	ABCC4	O15439	1325 aa		32.76	■■■□□ 2.83
NME3-208	ENST00000565379	PPEF1	O14829	653 aa	Predicted RBP	32.75	■■■□□ 2.83
NME3-208	ENST00000565379	FTSJ3	Q8IY81	847 aa	Known RBP	32.74	■■■□□ 2.83
NME3-208	ENST00000565379	HSP90B1	P14625	803 aa	Known RBP	32.72	■■■□□ 2.83
NME3-208	ENST00000565379	IARS	P41252	1262 aa	Known RBP	32.72	■■■□□ 2.83
NME3-208	ENST00000565379	GCKR	Q14397	625 aa		32.72	■■■□□ 2.83
NME3-208	ENST00000565379	DZIP1L	Q8IYY4	767 aa	Known RBP	32.72	■■■□□ 2.83
NME3-208	ENST00000565379	SH3TC1	Q8TE82	1336 aa		32.72	■■■□□ 2.83
NME3-208	ENST00000565379	CWF19L2	Q2TBE0	894 aa	Known RBP	32.71	■■■□□ 2.83
NME3-208	ENST00000565379	INTS3	Q68E01	1043 aa	Known RBP	32.71	■■■□□ 2.83
NME3-208	ENST00000565379	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	32.71	■■■□□ 2.83
NME3-208	ENST00000565379	TAF1	P21675	1872 aa		32.7	■■■□□ 2.83
NME3-208	ENST00000565379	PCCA	P05165	728 aa	Predicted RBP	32.7	■■■□□ 2.83
NME3-208	ENST00000565379	RTL5	Q5HYW3	569 aa	Predicted RBP	32.7	■■■□□ 2.83
NME3-208	ENST00000565379	FAM89A	Q96GI7	184 aa		32.7	■■■□□ 2.83
NME3-208	ENST00000565379	DDX60	Q8IY21	1712 aa	Known RBP	32.7	■■■□□ 2.83
NME3-208	ENST00000565379	CENPB	P07199	599 aa	Predicted RBP	32.69	■■■□□ 2.82
NME3-208	ENST00000565379	POTEI	P0CG38	1075 aa		32.69	■■■□□ 2.82
NME3-208	ENST00000565379	POTEJ	P0CG39	1038 aa		32.69	■■■□□ 2.82
NME3-208	ENST00000565379	PSMD1	Q99460	953 aa		32.69	■■■□□ 2.82
NME3-208	ENST00000565379	PDE3A	Q14432	1141 aa		32.68	■■■□□ 2.82
NME3-208	ENST00000565379	COL4A1	P02462	1669 aa		32.68	■■■□□ 2.82
NME3-208	ENST00000565379	CLUAP1	Q96AJ1	413 aa		32.67	■■■□□ 2.82
NME3-208	ENST00000565379	RRP1	P56182	461 aa	Known RBP	32.66	■■■□□ 2.82
NME3-208	ENST00000565379		H7C1W4	665 aa		32.65	■■■□□ 2.82
NME3-208	ENST00000565379	CC2D2B	Q6DHV5	1058 aa		32.65	■■■□□ 2.82
NME3-208	ENST00000565379	C9orf78	Q9NZ63	289 aa	Predicted RBP	32.65	■■■□□ 2.82
NME3-208	ENST00000565379	CDHR2	Q9BYE9	1310 aa		32.64	■■■□□ 2.82
NME3-208	ENST00000565379	ATP6V0A2	Q9Y487	856 aa		32.64	■■■□□ 2.82
NME3-208	ENST00000565379	FZD9	O00144	591 aa		32.63	■■■□□ 2.81
NME3-208	ENST00000565379	GRM8	O00222	908 aa		32.63	■■■□□ 2.81
NME3-208	ENST00000565379	PLIN1	O60240	522 aa		32.63	■■■□□ 2.81
NME3-208	ENST00000565379	HDAC5	Q9UQL6	1122 aa		32.63	■■■□□ 2.81
NME3-208	ENST00000565379	JARID2	Q92833	1246 aa	Predicted RBP	32.62	■■■□□ 2.81
NME3-208	ENST00000565379	UTY	O14607	1347 aa		32.61	■■■□□ 2.81
NME3-208	ENST00000565379	TMEM57	Q8N5G2	664 aa		32.61	■■■□□ 2.81
NME3-208	ENST00000565379	L3MBTL3	Q96JM7	780 aa	Predicted RBP	32.61	■■■□□ 2.81
NME3-208	ENST00000565379	TNN	Q9UQP3	1299 aa		32.61	■■■□□ 2.81
NME3-208	ENST00000565379	IRS4	O14654	1257 aa	Predicted RBP	32.6	■■■□□ 2.81
NME3-208	ENST00000565379	GRAP	Q13588	217 aa		32.6	■■■□□ 2.81
NME3-208	ENST00000565379	CHADL	Q6NUI6	762 aa		32.6	■■■□□ 2.81
NME3-208	ENST00000565379	DDX46	Q7L014	1031 aa	Known RBP	32.6	■■■□□ 2.81
NME3-208	ENST00000565379	GRAPL	Q8TC17	118 aa	Predicted RBP	32.6	■■■□□ 2.81
NME3-208	ENST00000565379	UBE3B	Q7Z3V4	1068 aa		32.59	■■■□□ 2.81
NME3-208	ENST00000565379	LARGE2	Q8N3Y3	721 aa		32.59	■■■□□ 2.81
NME3-208	ENST00000565379	RLBP1	P12271	317 aa		32.58	■■■□□ 2.81
NME3-208	ENST00000565379	AOC3	Q16853	763 aa		32.58	■■■□□ 2.81
NME3-208	ENST00000565379	USP44	Q9H0E7	712 aa		32.58	■■■□□ 2.81
NME3-208	ENST00000565379	CHMP4B	Q9H444	224 aa	Known RBP	32.58	■■■□□ 2.81
NME3-208	ENST00000565379	TAF1D	Q9H5J8	278 aa	Predicted RBP	32.58	■■■□□ 2.81
NME3-208	ENST00000565379	IQCA1L	A6NCM1	817 aa		32.57	■■■□□ 2.8
NME3-208	ENST00000565379	CASP7	P55210	303 aa		32.57	■■■□□ 2.8
NME3-208	ENST00000565379	ITPRIP	Q8IWB1	547 aa		32.57	■■■□□ 2.8
NME3-208	ENST00000565379	PANK1	Q8TE04	598 aa		32.57	■■■□□ 2.8
NME3-208	ENST00000565379	CELF1	Q92879	486 aa	Known RBP	32.57	■■■□□ 2.8
NME3-208	ENST00000565379	PDE8A	O60658	829 aa		32.56	■■■□□ 2.8
NME3-208	ENST00000565379	BBOX1	O75936	387 aa		32.56	■■■□□ 2.8
NME3-208	ENST00000565379	GNAI3	P08754	354 aa		32.56	■■■□□ 2.8
NME3-208	ENST00000565379	JDP2	Q8WYK2	163 aa		32.56	■■■□□ 2.8
NME3-208	ENST00000565379	PLA2G12B	Q9BX93	195 aa		32.56	■■■□□ 2.8
NME3-208	ENST00000565379	SUPT16H	Q9Y5B9	1047 aa	Known RBP	32.56	■■■□□ 2.8
NME3-208	ENST00000565379	PPIP5K2	O43314	1243 aa		32.55	■■■□□ 2.8
NME3-208	ENST00000565379	MVP	Q14764	893 aa	Known RBP	32.55	■■■□□ 2.8
NME3-208	ENST00000565379	SF3B3	Q15393	1217 aa	Known RBP	32.55	■■■□□ 2.8
NME3-208	ENST00000565379	SP8	Q8IXZ3	490 aa		32.55	■■■□□ 2.8
NME3-208	ENST00000565379	GJA3	Q9Y6H8	435 aa		32.55	■■■□□ 2.8

Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms