RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-222ENST00000561431 CAPN12Q6ZSI9 719 aa6.73□□□□□ -1.33
LRRC28-222ENST00000561431 SND1Q7KZF4 910 aaKnown RBP eCLIP6.73□□□□□ -1.33
LRRC28-222ENST00000561431 C2orf49Q9BVC5 232 aaPredicted RBP6.73□□□□□ -1.33
LRRC28-222ENST00000561431 TUT1Q9H6E5 874 aaKnown RBP6.73□□□□□ -1.33
LRRC28-222ENST00000561431 USP3Q9Y6I4 520 aa6.73□□□□□ -1.33
LRRC28-222ENST00000561431 CCDC27Q2M243 656 aa6.72□□□□□ -1.33
LRRC28-222ENST00000561431 C16orf46Q6P387 395 aa6.72□□□□□ -1.33
LRRC28-222ENST00000561431 ZNF295-AS1Q8N0V1 137 aa6.72□□□□□ -1.33
LRRC28-222ENST00000561431 STAG2Q8N3U4 1231 aa6.72□□□□□ -1.33
LRRC28-222ENST00000561431 COL26A1Q96A83 441 aa6.72□□□□□ -1.33
LRRC28-222ENST00000561431 GOLGA2P5Q9HBQ8 144 aa6.72□□□□□ -1.33
LRRC28-222ENST00000561431 NEUROD4Q9HD90 331 aa6.72□□□□□ -1.33
LRRC28-222ENST00000561431 EFSO43281 561 aa6.71□□□□□ -1.34
LRRC28-222ENST00000561431 TATP17735 454 aaPredicted RBP6.71□□□□□ -1.34
LRRC28-222ENST00000561431 ALAS2P22557 587 aa6.71□□□□□ -1.34
LRRC28-222ENST00000561431 BICDL1Q6ZP65 573 aa6.71□□□□□ -1.34
LRRC28-222ENST00000561431 NACC1Q96RE7 527 aa6.71□□□□□ -1.34
LRRC28-222ENST00000561431 ZIC5Q96T25 663 aa6.71□□□□□ -1.34
LRRC28-222ENST00000561431 MARK1Q9P0L2 795 aa6.71□□□□□ -1.34
LRRC28-222ENST00000561431 IQSEC3Q9UPP2 1182 aaPredicted RBP6.71□□□□□ -1.34
LRRC28-222ENST00000561431 SOWAHDA6NJG2 315 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 M0R082 166 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 HYAL3O43820 417 aaPredicted RBP6.7□□□□□ -1.34
LRRC28-222ENST00000561431 H2AFB1P0C5Y9 115 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 H2AFB2P0C5Z0 115 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 MFAP1P55081 439 aaKnown RBP6.7□□□□□ -1.34
LRRC28-222ENST00000561431 FKBP4Q02790 459 aaKnown RBP eCLIP6.7□□□□□ -1.34
LRRC28-222ENST00000561431 SF3B2Q13435 895 aaKnown RBP6.7□□□□□ -1.34
LRRC28-222ENST00000561431 MTMR3Q13615 1198 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 GRIK4Q16099 956 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 SH3PXD2AQ5TCZ1 1133 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 SAMD5Q5TGI4 173 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 SYT9Q86SS6 491 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 ALDH16A1Q8IZ83 802 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 ZNF417Q8TAU3 575 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 ZNF587Q96SQ5 575 aaPredicted RBP6.7□□□□□ -1.34
LRRC28-222ENST00000561431 PHACTR1Q9C0D0 580 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 EGFL7Q9UHF1 273 aa6.7□□□□□ -1.34
LRRC28-222ENST00000561431 EML1O00423 815 aa6.69□□□□□ -1.34
LRRC28-222ENST00000561431 ICMTO60725 284 aa6.69□□□□□ -1.34
LRRC28-222ENST00000561431 TRIM28Q13263 835 aaKnown RBP6.69□□□□□ -1.34
LRRC28-222ENST00000561431 RHPN1Q8TCX5 695 aa6.69□□□□□ -1.34
LRRC28-222ENST00000561431 HELQQ8TDG4 1101 aa6.69□□□□□ -1.34
LRRC28-222ENST00000561431 ZDHHC1Q8WTX9 485 aa6.69□□□□□ -1.34
LRRC28-222ENST00000561431 PRDM6Q9NQX0 595 aa6.69□□□□□ -1.34
LRRC28-222ENST00000561431 ZDHHC3Q9NYG2 299 aa6.69□□□□□ -1.34
LRRC28-222ENST00000561431 STARD13Q9Y3M8 1113 aa6.69□□□□□ -1.34
LRRC28-222ENST00000561431 GJA3Q9Y6H8 435 aa6.69□□□□□ -1.34
LRRC28-222ENST00000561431 SMARCA4P51532 1647 aa6.68□□□□□ -1.34
LRRC28-222ENST00000561431 ADARB2-AS1A8MUL3 147 aa6.68□□□□□ -1.34
LRRC28-222ENST00000561431 FAM13AO94988 1023 aa6.68□□□□□ -1.34
LRRC28-222ENST00000561431 LAMC2Q13753 1193 aa6.68□□□□□ -1.34
LRRC28-222ENST00000561431 COX20Q5RI15 118 aa6.68□□□□□ -1.34
LRRC28-222ENST00000561431 C8orf86Q6ZUL3 223 aa6.68□□□□□ -1.34
LRRC28-222ENST00000561431 SAP130Q9H0E3 1048 aa6.68□□□□□ -1.34
LRRC28-222ENST00000561431 SIN3BO75182 1162 aa6.67□□□□□ -1.34
LRRC28-222ENST00000561431 ALBP02768 609 aa6.67□□□□□ -1.34
LRRC28-222ENST00000561431 NID1P14543 1247 aa6.67□□□□□ -1.34
LRRC28-222ENST00000561431 BRD2P25440 801 aaKnown RBP6.67□□□□□ -1.34
LRRC28-222ENST00000561431 TXLNAP40222 546 aa6.67□□□□□ -1.34
LRRC28-222ENST00000561431 DGKZQ13574 1117 aa6.67□□□□□ -1.34
LRRC28-222ENST00000561431 RTN1Q16799 776 aa6.67□□□□□ -1.34
LRRC28-222ENST00000561431 MICALL1Q8N3F8 863 aa6.67□□□□□ -1.34
LRRC28-222ENST00000561431 STIM2Q9P246 746 aa6.67□□□□□ -1.34
LRRC28-222ENST00000561431 HIRAP54198 1017 aaPredicted RBP6.66□□□□□ -1.34
LRRC28-222ENST00000561431 ADGRE1Q14246 886 aa6.66□□□□□ -1.34
LRRC28-222ENST00000561431 MBTPS1Q14703 1052 aa6.66□□□□□ -1.34
LRRC28-222ENST00000561431 HIF1AQ16665 826 aa6.66□□□□□ -1.34
LRRC28-222ENST00000561431 C11orf91Q3C1V1 193 aa6.66□□□□□ -1.34
LRRC28-222ENST00000561431 C1orf53Q5VUE5 145 aa6.66□□□□□ -1.34
LRRC28-222ENST00000561431 ABTB2Q8N961 1025 aa6.66□□□□□ -1.34
LRRC28-222ENST00000561431 TMC1Q8TDI8 760 aa6.66□□□□□ -1.34
LRRC28-222ENST00000561431 QTRT2Q9H974 415 aaKnown RBP6.66□□□□□ -1.34
LRRC28-222ENST00000561431 KLK14Q9P0G3 267 aa6.66□□□□□ -1.34
LRRC28-222ENST00000561431 BAZ1AQ9NRL2 1556 aaPredicted RBP6.65□□□□□ -1.34
LRRC28-222ENST00000561431 MPSTP25325 297 aa6.65□□□□□ -1.34
LRRC28-222ENST00000561431 MAPK1P28482 360 aa6.65□□□□□ -1.34
LRRC28-222ENST00000561431 NOM1Q5C9Z4 860 aaKnown RBP6.65□□□□□ -1.34
LRRC28-222ENST00000561431 ALKBH2Q6NS38 261 aa6.65□□□□□ -1.34
LRRC28-222ENST00000561431 TTC16Q8NEE8 873 aa6.65□□□□□ -1.34
LRRC28-222ENST00000561431 TNFRSF25Q93038 417 aa6.65□□□□□ -1.34
LRRC28-222ENST00000561431 IFT43Q96FT9 208 aa6.65□□□□□ -1.34
LRRC28-222ENST00000561431 NCAPD3P42695 1498 aa6.65□□□□□ -1.35
LRRC28-222ENST00000561431 C9orf172C9J069 976 aa6.64□□□□□ -1.35
LRRC28-222ENST00000561431 SELPP16109 830 aa6.64□□□□□ -1.35
LRRC28-222ENST00000561431 MYO19Q96H55 970 aa6.64□□□□□ -1.35
LRRC28-222ENST00000561431 ANKIB1Q9P2G1 1089 aa6.64□□□□□ -1.35
LRRC28-222ENST00000561431 BRPF3Q9ULD4 1205 aa6.64□□□□□ -1.35
LRRC28-222ENST00000561431 LRFN2Q9ULH4 789 aa6.64□□□□□ -1.35
LRRC28-222ENST00000561431 ATAD2BQ9ULI0 1458 aa6.64□□□□□ -1.35
LRRC28-222ENST00000561431 PEG3Q9GZU2 1588 aa6.64□□□□□ -1.35
LRRC28-222ENST00000561431 NDUFB5O43674 189 aa6.63□□□□□ -1.35
LRRC28-222ENST00000561431 SMARCA2P51531 1590 aa6.63□□□□□ -1.35
LRRC28-222ENST00000561431 HMGXB3Q12766 1538 aa6.63□□□□□ -1.35
LRRC28-222ENST00000561431 C20orf204Q6ZNR8 217 aa6.63□□□□□ -1.35
LRRC28-222ENST00000561431 SLC30A3Q99726 388 aa6.63□□□□□ -1.35
LRRC28-222ENST00000561431 MROH2BQ7Z745 1585 aa6.62□□□□□ -1.35
LRRC28-222ENST00000561431 PCSK2P16519 638 aa6.62□□□□□ -1.35
LRRC28-222ENST00000561431 EIF1AXP47813 144 aaKnown RBP6.62□□□□□ -1.35
LRRC28-222ENST00000561431 LRRC69Q6ZNQ3 347 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms