RNA–Protein interactions for RNA: ENST00000560998.5

RABGGTA-220, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 5

Gene RABGGTA, Length 1,997 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-220ENST00000560998 PCDH11YQ9BZA8 1340 aa16.59■□□□□ 0.25
RABGGTA-220ENST00000560998 ZNF335Q9H4Z2 1342 aaPredicted RBP16.59■□□□□ 0.25
RABGGTA-220ENST00000560998 TOM1L2Q6ZVM7 507 aa16.58■□□□□ 0.25
RABGGTA-220ENST00000560998 GPATCH3Q96I76 525 aa16.58■□□□□ 0.25
RABGGTA-220ENST00000560998 BCL11BQ9C0K0 894 aaPredicted RBP16.58■□□□□ 0.25
RABGGTA-220ENST00000560998 MORC2Q9Y6X9 1032 aaPredicted RBP16.58■□□□□ 0.25
RABGGTA-220ENST00000560998 WDR33Q9C0J8 1336 aaKnown RBP16.58■□□□□ 0.24
RABGGTA-220ENST00000560998 SASH1O94885 1247 aa16.58■□□□□ 0.24
RABGGTA-220ENST00000560998 IFIT2P09913 472 aaKnown RBP16.58■□□□□ 0.24
RABGGTA-220ENST00000560998 HSPA4P34932 840 aa16.58■□□□□ 0.24
RABGGTA-220ENST00000560998 NCBP1Q09161 790 aaKnown RBP16.58■□□□□ 0.24
RABGGTA-220ENST00000560998 ZCRB1Q8TBF4 217 aaKnown RBP16.58■□□□□ 0.24
RABGGTA-220ENST00000560998 UBR2Q8IWV8 1755 aa16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 SMTNL1A8MU46 457 aa16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 PIP4K2AP48426 406 aaPredicted RBP16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 G3BP1Q13283 466 aaKnown RBP eCLIP16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 AACSQ86V21 672 aa16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 C17orf53Q8N3J3 647 aaPredicted RBP16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 DNAJC2Q99543 621 aaKnown RBP16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 RAD50Q92878 1312 aa16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 FAM177BA6PVY3 158 aa16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 SLFN14P0C7P3 912 aa16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 EPHA10Q5JZY3 1008 aa16.57■□□□□ 0.24
RABGGTA-220ENST00000560998 LSG1Q9H089 658 aaKnown RBP16.56■□□□□ 0.24
RABGGTA-220ENST00000560998 TSPYL1Q9H0U9 437 aa16.56■□□□□ 0.24
RABGGTA-220ENST00000560998 PAPPAQ13219 1627 aa16.56■□□□□ 0.24
RABGGTA-220ENST00000560998 SHANK3Q9BYB0 1731 aa16.56■□□□□ 0.24
RABGGTA-220ENST00000560998 ERVV-2B6SEH9 535 aa16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 TIGD1Q96MW7 591 aa16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 CARD10Q9BWT7 1032 aa16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 KDM4FA0A1W2PPD8 638 aa16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 NKX1-1Q15270 411 aaPredicted RBP16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 USP48Q86UV5 1035 aa16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 EAF2Q96CJ1 260 aaPredicted RBP16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 CHAMP1Q96JM3 812 aa16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 KCNF1Q9H3M0 494 aa16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 PAXBP1Q9Y5B6 917 aa16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 COL15A1P39059 1388 aa16.55■□□□□ 0.24
RABGGTA-220ENST00000560998 TAF7LQ5H9L4 462 aa16.54■□□□□ 0.24
RABGGTA-220ENST00000560998 CWC27Q6UX04 472 aaKnown RBP16.54■□□□□ 0.24
RABGGTA-220ENST00000560998 PLBD2Q8NHP8 589 aa16.54■□□□□ 0.24
RABGGTA-220ENST00000560998 CALCOCO1Q9P1Z2 691 aa16.54■□□□□ 0.24
RABGGTA-220ENST00000560998 KCPQ6ZWJ8 1503 aa16.54■□□□□ 0.24
RABGGTA-220ENST00000560998 RPAP1Q9BWH6 1393 aaPredicted RBP16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 HCLS1P14317 486 aaPredicted RBP16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 IL2RBP14784 551 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 UBE2HP62256 183 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 IRX5P78411 483 aaPredicted RBP16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 TERF2Q15554 542 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 KRT222Q8N1A0 295 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 PYCARDQ9ULZ3 195 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 NHSL1Q5SYE7 1610 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 NBPF26B4DH59 902 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 NBPF14Q5TI25 921 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 NBPF10Q6P3W6 841 aaKnown RBP16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 NBPF15Q8N660 670 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 KLHDC4Q8TBB5 520 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 RUFY2Q8WXA3 655 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 EVI5LQ96CN4 794 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 SIL1Q9H173 461 aa16.53■□□□□ 0.24
RABGGTA-220ENST00000560998 GADD45BO75293 160 aaPredicted RBP16.52■□□□□ 0.24
RABGGTA-220ENST00000560998 RABL6Q3YEC7 729 aaPredicted RBP16.52■□□□□ 0.24
RABGGTA-220ENST00000560998 FOXD4L5Q5VV16 416 aaPredicted RBP16.52■□□□□ 0.24
RABGGTA-220ENST00000560998 FOXD4L4Q8WXT5 416 aaPredicted RBP16.52■□□□□ 0.24
RABGGTA-220ENST00000560998 FUCA2Q9BTY2 467 aa16.52■□□□□ 0.24
RABGGTA-220ENST00000560998 UPF3BQ9BZI7 483 aaKnown RBP16.52■□□□□ 0.24
RABGGTA-220ENST00000560998 COPRSQ9NQ92 184 aa16.52■□□□□ 0.24
RABGGTA-220ENST00000560998 NUP188Q5SRE5 1749 aa16.52■□□□□ 0.24
RABGGTA-220ENST00000560998 RFX5P48382 616 aaPredicted RBP16.51■□□□□ 0.23
RABGGTA-220ENST00000560998 UBE3BQ7Z3V4 1068 aa16.51■□□□□ 0.23
RABGGTA-220ENST00000560998 CCDC8Q9H0W5 538 aaPredicted RBP16.51■□□□□ 0.23
RABGGTA-220ENST00000560998 SNX14Q9Y5W7 946 aa16.51■□□□□ 0.23
RABGGTA-220ENST00000560998 ATP5J2-PTCD1G3V325 749 aa16.51■□□□□ 0.23
RABGGTA-220ENST00000560998 PTCD1O75127 700 aaKnown RBP16.51■□□□□ 0.23
RABGGTA-220ENST00000560998 CASP7P55210 303 aa16.51■□□□□ 0.23
RABGGTA-220ENST00000560998 KIF18AQ8NI77 898 aa16.51■□□□□ 0.23
RABGGTA-220ENST00000560998 TLR7Q9NYK1 1049 aaKnown RBP16.51■□□□□ 0.23
RABGGTA-220ENST00000560998 KCNJ4P48050 445 aa16.5■□□□□ 0.23
RABGGTA-220ENST00000560998 STRN4Q9NRL3 753 aa16.5■□□□□ 0.23
RABGGTA-220ENST00000560998 TNS2Q63HR2 1409 aa16.5■□□□□ 0.23
RABGGTA-220ENST00000560998 A0A087WZG4 1122 aa16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 IGSF3O75054 1194 aa16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 RASEFQ8IZ41 740 aa16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 MPNDQ8N594 471 aa16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 TULP2O00295 520 aa16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 EVA1CP58658 441 aa16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 PTPN12Q05209 780 aaKnown RBP16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 NOL8Q76FK4 1167 aaKnown RBP16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 ZNF397Q8NF99 534 aaPredicted RBP16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 DDX54Q8TDD1 881 aaKnown RBP16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 ATP6V1DQ9Y5K8 247 aa16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 TOGARAM1Q9Y4F4 1720 aa16.49■□□□□ 0.23
RABGGTA-220ENST00000560998 HIP1O00291 1037 aa16.48■□□□□ 0.23
RABGGTA-220ENST00000560998 PTH1RQ03431 593 aa16.48■□□□□ 0.23
RABGGTA-220ENST00000560998 FAM53CQ9NYF3 392 aa16.48■□□□□ 0.23
RABGGTA-220ENST00000560998 TJP1Q07157 1748 aa16.48■□□□□ 0.23
RABGGTA-220ENST00000560998 TTLL7Q6ZT98 887 aa16.47■□□□□ 0.23
RABGGTA-220ENST00000560998 CCDC112Q8NEF3 446 aa16.47■□□□□ 0.23
RABGGTA-220ENST00000560998 TTC14Q96N46 770 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms