RNA–Protein interactions for RNA: ENST00000559937.1

SMAD3-212, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-212ENST00000559937 TFCP2Q12800 502 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 KRT32Q14532 448 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 ANKRD1Q15327 319 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 USPL1Q5W0Q7 1092 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 CREB3L3Q68CJ9 461 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 RUFY3Q7L099 469 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 TMEM87AQ8NBN3 555 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.7□□□□□ -0.86
SMAD3-212ENST00000559937 HAUS7Q99871 368 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 ISCA1Q9BUE6 129 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 PDRG1Q9NUG6 133 aa9.7□□□□□ -0.86
SMAD3-212ENST00000559937 TLR7Q9NYK1 1049 aaKnown RBP9.7□□□□□ -0.86
SMAD3-212ENST00000559937 A0A0D9SFI3 127 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 ATP5J2-PTCD1G3V325 749 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 SLC27A2O14975 620 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 PTCD1O75127 700 aaKnown RBP9.69□□□□□ -0.86
SMAD3-212ENST00000559937 IL15P40933 162 aaPredicted RBP9.69□□□□□ -0.86
SMAD3-212ENST00000559937 KCNJ4P48050 445 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 LAMB2P55268 1798 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 EVA1CP58658 441 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 PRPF40BQ6NWY9 871 aaKnown RBP9.69□□□□□ -0.86
SMAD3-212ENST00000559937 LMBR1LQ6UX01 489 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 TTLL7Q6ZT98 887 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 GAS2L3Q86XJ1 694 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 SH3TC1Q8TE82 1336 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 SYAP1Q96A49 352 aaPredicted RBP9.69□□□□□ -0.86
SMAD3-212ENST00000559937 ABCC12Q96J65 1359 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 FAM227BQ96M60 508 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 JAKMIP1Q96N16 626 aaKnown RBP9.69□□□□□ -0.86
SMAD3-212ENST00000559937 PLA2G12BQ9BX93 195 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 BOLA2Q9H3K6 86 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 TMOD3Q9NYL9 352 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 DBNLQ9UJU6 430 aaKnown RBP9.69□□□□□ -0.86
SMAD3-212ENST00000559937 ATP6V1DQ9Y5K8 247 aa9.69□□□□□ -0.86
SMAD3-212ENST00000559937 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.69□□□□□ -0.86
SMAD3-212ENST00000559937 NWD2Q9ULI1 1742 aa9.68□□□□□ -0.86
SMAD3-212ENST00000559937 CDHR2Q9BYE9 1310 aa9.68□□□□□ -0.86
SMAD3-212ENST00000559937 NUTM2BA6NNL0 878 aaPredicted RBP9.68□□□□□ -0.86
SMAD3-212ENST00000559937 NUTM2EB1AL46 878 aaPredicted RBP9.68□□□□□ -0.86
SMAD3-212ENST00000559937 EYA2O00167 538 aa9.68□□□□□ -0.86
SMAD3-212ENST00000559937 PRPF40AO75400 957 aaKnown RBP9.68□□□□□ -0.86
SMAD3-212ENST00000559937 A1BGP04217 495 aa9.68□□□□□ -0.86
SMAD3-212ENST00000559937 PIP4K2AP48426 406 aaPredicted RBP9.68□□□□□ -0.86
SMAD3-212ENST00000559937 ZSCAN23Q3MJ62 389 aa9.68□□□□□ -0.86
SMAD3-212ENST00000559937 MEX3CQ5U5Q3 659 aaKnown RBP9.68□□□□□ -0.86
SMAD3-212ENST00000559937 ZNF772Q68DY9 489 aaPredicted RBP9.68□□□□□ -0.86
SMAD3-212ENST00000559937 ATG9AQ7Z3C6 839 aa9.68□□□□□ -0.86
SMAD3-212ENST00000559937 NUTM2AQ8IVF1 878 aaPredicted RBP9.68□□□□□ -0.86
SMAD3-212ENST00000559937 KBTBD3Q8NAB2 608 aa9.68□□□□□ -0.86
SMAD3-212ENST00000559937 KLHDC4Q8TBB5 520 aa9.68□□□□□ -0.86
SMAD3-212ENST00000559937 SMC3Q9UQE7 1217 aa9.68□□□□□ -0.86
SMAD3-212ENST00000559937 U3KPZ7 1027 aaPredicted RBP9.68□□□□□ -0.86
SMAD3-212ENST00000559937 DDX60Q8IY21 1712 aaKnown RBP9.68□□□□□ -0.86
SMAD3-212ENST00000559937 ZNF831Q5JPB2 1677 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 BCL9O00512 1426 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 TAF5LO75529 589 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 PCCAP05165 728 aaPredicted RBP9.67□□□□□ -0.86
SMAD3-212ENST00000559937 ZSCAN22P10073 491 aaPredicted RBP9.67□□□□□ -0.86
SMAD3-212ENST00000559937 NCLP19338 710 aaKnown RBP9.67□□□□□ -0.86
SMAD3-212ENST00000559937 CCDC173Q0VFZ6 552 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 TCIRG1Q13488 830 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 CSPP1Q1MSJ5 1256 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 ADCK5Q3MIX3 580 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 CAVIN1Q6NZI2 390 aaKnown RBP9.67□□□□□ -0.86
SMAD3-212ENST00000559937 BLOC1S2Q6QNY1 142 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 KIF6Q6ZMV9 814 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 NOL8Q76FK4 1167 aaKnown RBP9.67□□□□□ -0.86
SMAD3-212ENST00000559937 GPT2Q8TD30 523 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 DDX54Q8TDD1 881 aaKnown RBP9.67□□□□□ -0.86
SMAD3-212ENST00000559937 PPP1R9BQ96SB3 815 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 DBNDD2Q9BQY9 259 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 PANK2Q9BZ23 570 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 STRN4Q9NRL3 753 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 LRP5O75197 1615 aa9.67□□□□□ -0.86
SMAD3-212ENST00000559937 AKAP11Q9UKA4 1901 aa9.66□□□□□ -0.86
SMAD3-212ENST00000559937 STX6O43752 255 aa9.66□□□□□ -0.86
SMAD3-212ENST00000559937 STARD3NLO95772 234 aa9.66□□□□□ -0.86
SMAD3-212ENST00000559937 PDCP20941 246 aa9.66□□□□□ -0.86
SMAD3-212ENST00000559937 RPS6KB1P23443 525 aa9.66□□□□□ -0.86
SMAD3-212ENST00000559937 LRRFIP1Q32MZ4 808 aaKnown RBP9.66□□□□□ -0.86
SMAD3-212ENST00000559937 MCMDC2Q4G0Z9 681 aa9.66□□□□□ -0.86
SMAD3-212ENST00000559937 HSP90AB3PQ58FF7 597 aa9.66□□□□□ -0.86
SMAD3-212ENST00000559937 LRSAM1Q6UWE0 723 aa9.66□□□□□ -0.86
SMAD3-212ENST00000559937 ANP32BQ92688 251 aaKnown RBP9.66□□□□□ -0.86
SMAD3-212ENST00000559937 HELLSQ9NRZ9 838 aa9.66□□□□□ -0.86
SMAD3-212ENST00000559937 MAP3K15Q6ZN16 1313 aa9.65□□□□□ -0.86
SMAD3-212ENST00000559937 PHF14O94880 888 aa9.65□□□□□ -0.86
SMAD3-212ENST00000559937 F13A1P00488 732 aa9.65□□□□□ -0.86
SMAD3-212ENST00000559937 SYT1P21579 422 aa9.65□□□□□ -0.86
SMAD3-212ENST00000559937 NASPP49321 788 aaPredicted RBP9.65□□□□□ -0.86
SMAD3-212ENST00000559937 GIGYF2Q6Y7W6 1299 aaKnown RBP9.65□□□□□ -0.86
SMAD3-212ENST00000559937 JARID2Q92833 1246 aaPredicted RBP9.65□□□□□ -0.86
SMAD3-212ENST00000559937 DSCC1Q9BVC3 393 aa9.65□□□□□ -0.86
SMAD3-212ENST00000559937 ZBTB3Q9H5J0 574 aa9.65□□□□□ -0.86
SMAD3-212ENST00000559937 AKAP2Q9Y2D5 859 aa9.65□□□□□ -0.86
SMAD3-212ENST00000559937 DOCK2Q92608 1830 aa9.65□□□□□ -0.86
SMAD3-212ENST00000559937 AFF2P51816 1311 aa9.64□□□□□ -0.87
SMAD3-212ENST00000559937 LETM1O95202 739 aaPredicted RBP9.64□□□□□ -0.87
SMAD3-212ENST00000559937 LARGE1O95461 756 aa9.64□□□□□ -0.87
SMAD3-212ENST00000559937 CSF1RP07333 972 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms