RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 WWC1Q8IX03 1113 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 DDX54Q8TDD1 881 aaKnown RBP6.84□□□□□ -1.31
SPG11-220ENST00000559933 TSR2Q969E8 191 aaKnown RBP6.84□□□□□ -1.31
SPG11-220ENST00000559933 TBC1D2Q9BYX2 928 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 LGR6Q9HBX8 967 aa6.84□□□□□ -1.31
SPG11-220ENST00000559933 RGS17Q9UGC6 210 aaPredicted RBP6.84□□□□□ -1.31
SPG11-220ENST00000559933 MS4A1P11836 297 aa6.83□□□□□ -1.32
SPG11-220ENST00000559933 PHKG2P15735 406 aa6.83□□□□□ -1.32
SPG11-220ENST00000559933 PLEKHO1Q53GL0 409 aaPredicted RBP6.83□□□□□ -1.32
SPG11-220ENST00000559933 GAS2L2Q8NHY3 880 aa6.83□□□□□ -1.32
SPG11-220ENST00000559933 NUDT12Q9BQG2 462 aa6.83□□□□□ -1.32
SPG11-220ENST00000559933 QTRT2Q9H974 415 aaKnown RBP6.83□□□□□ -1.32
SPG11-220ENST00000559933 MIS18AQ9NYP9 233 aa6.83□□□□□ -1.32
SPG11-220ENST00000559933 PCDHGC3Q9UN70 934 aa6.83□□□□□ -1.32
SPG11-220ENST00000559933 LAS1LQ9Y4W2 734 aaKnown RBP6.83□□□□□ -1.32
SPG11-220ENST00000559933 ADAMTS7Q9UKP4 1686 aa6.83□□□□□ -1.32
SPG11-220ENST00000559933 BRWD3Q6RI45 1802 aa6.83□□□□□ -1.32
SPG11-220ENST00000559933 SIPA1L3O60292 1781 aaPredicted RBP6.82□□□□□ -1.32
SPG11-220ENST00000559933 SCN11AQ9UI33 1791 aa6.82□□□□□ -1.32
SPG11-220ENST00000559933 TTC24A2A3L6 582 aaPredicted RBP6.82□□□□□ -1.32
SPG11-220ENST00000559933 GNAT3A8MTJ3 354 aa6.82□□□□□ -1.32
SPG11-220ENST00000559933 NEFMP07197 916 aa6.82□□□□□ -1.32
SPG11-220ENST00000559933 GJA5P36382 358 aa6.82□□□□□ -1.32
SPG11-220ENST00000559933 KRT24Q2M2I5 525 aa6.82□□□□□ -1.32
SPG11-220ENST00000559933 POTEAQ6S8J7 498 aa6.82□□□□□ -1.32
SPG11-220ENST00000559933 IL17REQ8NFR9 667 aa6.82□□□□□ -1.32
SPG11-220ENST00000559933 ZCRB1Q8TBF4 217 aaKnown RBP6.82□□□□□ -1.32
SPG11-220ENST00000559933 GJD4Q96KN9 370 aaPredicted RBP6.82□□□□□ -1.32
SPG11-220ENST00000559933 PKD2L1Q9P0L9 805 aa6.82□□□□□ -1.32
SPG11-220ENST00000559933 RGS12O14924 1447 aa6.82□□□□□ -1.32
SPG11-220ENST00000559933 PCDH11XQ9BZA7 1347 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 PCDH11YQ9BZA8 1340 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 FANCIQ9NVI1 1328 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 MRC1P22897 1456 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 RNMTO43148 476 aaKnown RBP6.81□□□□□ -1.32
SPG11-220ENST00000559933 KCNQ3O43525 872 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 CCNYL3P0C7X3 344 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 AKAP4Q5JQC9 854 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 C1orf141Q5JVX7 400 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 RSBN1LQ6PCB5 846 aaPredicted RBP6.81□□□□□ -1.32
SPG11-220ENST00000559933 MARCH10Q8NA82 808 aaPredicted RBP6.81□□□□□ -1.32
SPG11-220ENST00000559933 PRR7Q8TB68 274 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 PNNQ9H307 717 aaKnown RBP6.81□□□□□ -1.32
SPG11-220ENST00000559933 TRPC5Q9UL62 973 aaPredicted RBP6.81□□□□□ -1.32
SPG11-220ENST00000559933 SPG7Q9UQ90 795 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 CEMIPQ8WUJ3 1361 aa6.81□□□□□ -1.32
SPG11-220ENST00000559933 SRCAPQ6ZRS2 3230 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 KDM3BQ7LBC6 1761 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 WNT7AO00755 349 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 SLFN5Q08AF3 891 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 DDB1Q16531 1140 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 CCDC27Q2M243 656 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 AMOTQ4VCS5 1084 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 DUSP27Q5VZP5 1158 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 PTF1AQ7RTS3 328 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 RIC3Q7Z5B4 369 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 SEPT12Q8IYM1 358 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 RTF1Q92541 710 aaKnown RBP6.8□□□□□ -1.32
SPG11-220ENST00000559933 ACSBG1Q96GR2 724 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 ZBTB3Q9H5J0 574 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 MBIPQ9NS73 344 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 THRAP3Q9Y2W1 955 aaKnown RBP6.8□□□□□ -1.32
SPG11-220ENST00000559933 EP400Q96L91 3159 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 ITGB4P16144 1822 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 C5P01031 1676 aa6.8□□□□□ -1.32
SPG11-220ENST00000559933 PAPPAQ13219 1627 aa6.79□□□□□ -1.32
SPG11-220ENST00000559933 SPTLC1O15269 473 aa6.79□□□□□ -1.32
SPG11-220ENST00000559933 WNT7BP56706 349 aa6.79□□□□□ -1.32
SPG11-220ENST00000559933 SLC39A6Q13433 755 aa6.79□□□□□ -1.32
SPG11-220ENST00000559933 PTPRNQ16849 979 aa6.79□□□□□ -1.32
SPG11-220ENST00000559933 CSPP1Q1MSJ5 1256 aa6.79□□□□□ -1.32
SPG11-220ENST00000559933 IFNL2Q8IZJ0 200 aa6.79□□□□□ -1.32
SPG11-220ENST00000559933 EXOC5O00471 708 aa6.78□□□□□ -1.32
SPG11-220ENST00000559933 ELL2O00472 640 aaPredicted RBP6.78□□□□□ -1.32
SPG11-220ENST00000559933 LCE2BO14633 110 aa6.78□□□□□ -1.32
SPG11-220ENST00000559933 TCERG1O14776 1098 aaKnown RBP6.78□□□□□ -1.32
SPG11-220ENST00000559933 ZNF853P0CG23 659 aa6.78□□□□□ -1.32
SPG11-220ENST00000559933 EXOSC9Q06265 439 aaKnown RBP6.78□□□□□ -1.32
SPG11-220ENST00000559933 LMOD3Q0VAK6 560 aa6.78□□□□□ -1.32
SPG11-220ENST00000559933 ZNF772Q68DY9 489 aaPredicted RBP6.78□□□□□ -1.32
SPG11-220ENST00000559933 ZNF787Q6DD87 383 aa6.78□□□□□ -1.32
SPG11-220ENST00000559933 DESI1Q6ICB0 168 aa6.78□□□□□ -1.32
SPG11-220ENST00000559933 TSPYL6Q8N831 410 aa6.78□□□□□ -1.32
SPG11-220ENST00000559933 SNIP1Q8TAD8 396 aaKnown RBP6.78□□□□□ -1.32
SPG11-220ENST00000559933 BCL2L13Q9BXK5 485 aa6.78□□□□□ -1.32
SPG11-220ENST00000559933 TOR4AQ9NXH8 423 aa6.78□□□□□ -1.32
SPG11-220ENST00000559933 KCPQ6ZWJ8 1503 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 PRAMEF22A3QJZ6 481 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 E9PSI1 815 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 KCNQ2O43526 872 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 TEFQ10587 303 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 PRPF38BQ5VTL8 546 aaKnown RBP6.77□□□□□ -1.33
SPG11-220ENST00000559933 WDR63Q8IWG1 891 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 TRMT2AQ8IZ69 625 aaKnown RBP6.77□□□□□ -1.33
SPG11-220ENST00000559933 C8orf58Q8NAV2 365 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 NFATC2IPQ8NCF5 419 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 SYTL4Q96C24 671 aaPredicted RBP6.77□□□□□ -1.33
SPG11-220ENST00000559933 DCAF5Q96JK2 942 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 MRGPRX2Q96LB1 330 aa6.77□□□□□ -1.33
SPG11-220ENST00000559933 SLC52A2Q9HAB3 445 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms