RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 MASTLQ96GX5 879 aa11.54□□□□□ -0.56
LDLR-210ENST00000559340 TMX4Q9H1E5 349 aaPredicted RBP11.54□□□□□ -0.56
LDLR-210ENST00000559340 CHD4Q14839 1912 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 CSF1RP07333 972 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 CCDC57Q2TAC2 916 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 STYK1Q6J9G0 422 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 SYNE4Q8N205 404 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 CCDC24Q8N4L8 307 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 TTLL11Q8NHH1 800 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 SUCLG2Q96I99 432 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 CRAMP1Q96RY5 1269 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 CRBNQ96SW2 442 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 CDC5LQ99459 802 aaKnown RBP11.53□□□□□ -0.56
LDLR-210ENST00000559340 ZBTB40Q9NUA8 1239 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 CHMP3Q9Y3E7 222 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 LRRFIP2Q9Y608 721 aaKnown RBP11.53□□□□□ -0.56
LDLR-210ENST00000559340 ABCC12Q96J65 1359 aa11.53□□□□□ -0.56
LDLR-210ENST00000559340 DLEC1Q9Y238 1755 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 ANKRD18BA2A2Z9 1011 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 GRIN3BO60391 1043 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 HMMRO75330 724 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 SRGNP10124 158 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 HOXA10P31260 410 aaPredicted RBP11.52□□□□□ -0.57
LDLR-210ENST00000559340 FOXO4P98177 505 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 IFIT5Q13325 482 aaKnown RBP11.52□□□□□ -0.57
LDLR-210ENST00000559340 CRY2Q49AN0 593 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 TAF7LQ5H9L4 462 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 LMBR1LQ6UX01 489 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 TMC4Q7Z404 712 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 RPAP2Q8IXW5 612 aaPredicted RBP11.52□□□□□ -0.57
LDLR-210ENST00000559340 ZNF622Q969S3 477 aaKnown RBP eCLIP11.52□□□□□ -0.577e-11■□□□□ 9.9
LDLR-210ENST00000559340 PIM2Q9P1W9 311 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 CACNA1SQ13698 1873 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 RTL9Q8NET4 1388 aa11.52□□□□□ -0.57
LDLR-210ENST00000559340 BBOX1O75936 387 aa11.51□□□□□ -0.57
LDLR-210ENST00000559340 ATP8B2P98198 1209 aa11.51□□□□□ -0.57
LDLR-210ENST00000559340 RABL6Q3YEC7 729 aaPredicted RBP11.51□□□□□ -0.57
LDLR-210ENST00000559340 PELP1Q8IZL8 1130 aaKnown RBP11.51□□□□□ -0.57
LDLR-210ENST00000559340 BICC1Q9H694 974 aaKnown RBP11.51□□□□□ -0.57
LDLR-210ENST00000559340 TAF1P21675 1872 aa11.51□□□□□ -0.57
LDLR-210ENST00000559340 DPEP1P16444 411 aa11.5□□□□□ -0.57
LDLR-210ENST00000559340 IGHMBP2P38935 993 aaKnown RBP11.5□□□□□ -0.57
LDLR-210ENST00000559340 GRIPAP1Q4V328 841 aa11.5□□□□□ -0.57
LDLR-210ENST00000559340 ERICH6BQ5W0A0 696 aa11.5□□□□□ -0.57
LDLR-210ENST00000559340 ANKRD18AQ8IVF6 992 aa11.5□□□□□ -0.57
LDLR-210ENST00000559340 TTLL6Q8N841 843 aa11.5□□□□□ -0.57
LDLR-210ENST00000559340 TNRC6CQ9HCJ0 1690 aaKnown RBP11.49□□□□□ -0.57
LDLR-210ENST00000559340 BRCA1P38398 1863 aaKnown RBP11.49□□□□□ -0.57
LDLR-210ENST00000559340 A0A0G2JLW4 131 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 ITGA6P23229 1130 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 RPS8P62241 208 aaKnown RBP11.49□□□□□ -0.57
LDLR-210ENST00000559340 MTX1Q13505 466 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 GRAPQ13588 217 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 DALRD3Q5D0E6 543 aaKnown RBP11.49□□□□□ -0.57
LDLR-210ENST00000559340 EPHA10Q5JZY3 1008 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 SOGA3Q5TF21 947 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 CC2D2BQ6DHV5 1058 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 NLGN2Q8NFZ4 835 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 GRAPLQ8TC17 118 aaPredicted RBP11.49□□□□□ -0.57
LDLR-210ENST00000559340 KAZALD1Q96I82 304 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 MPHOSPH8Q99549 860 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 GREM2Q9H772 168 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 FBXO3Q9UK99 471 aa11.49□□□□□ -0.57
LDLR-210ENST00000559340 SRGAP3O43295 1099 aa11.48□□□□□ -0.57
LDLR-210ENST00000559340 CHRNA5P30532 468 aa11.48□□□□□ -0.57
LDLR-210ENST00000559340 HSP90AB4PQ58FF6 505 aa11.48□□□□□ -0.57
LDLR-210ENST00000559340 ANKRD44Q8N8A2 993 aa11.48□□□□□ -0.57
LDLR-210ENST00000559340 EXOC6Q8TAG9 804 aa11.48□□□□□ -0.57
LDLR-210ENST00000559340 CCDC85AQ96PX6 553 aaPredicted RBP11.48□□□□□ -0.57
LDLR-210ENST00000559340 COL11A2P13942 1736 aaPredicted RBP11.48□□□□□ -0.57
LDLR-210ENST00000559340 SLX4Q8IY92 1834 aa11.48□□□□□ -0.57
LDLR-210ENST00000559340 SPEF2Q9C093 1822 aa11.48□□□□□ -0.57
LDLR-210ENST00000559340 ARFGEF1Q9Y6D6 1849 aa11.48□□□□□ -0.57
LDLR-210ENST00000559340 G3BP1Q13283 466 aaKnown RBP eCLIP11.47□□□□□ -0.57
LDLR-210ENST00000559340 FAM161AQ3B820 660 aa11.47□□□□□ -0.57
LDLR-210ENST00000559340 CEP85Q6P2H3 762 aa11.47□□□□□ -0.57
LDLR-210ENST00000559340 C3orf67Q6ZVT6 689 aa11.47□□□□□ -0.57
LDLR-210ENST00000559340 C1orf115Q9H7X2 142 aa11.47□□□□□ -0.57
LDLR-210ENST00000559340 CNNM1Q9NRU3 951 aa11.47□□□□□ -0.57
LDLR-210ENST00000559340 BSDC1Q9NW68 430 aaPredicted RBP11.47□□□□□ -0.57
LDLR-210ENST00000559340 KIAA1551Q9HCM1 1747 aa11.46□□□□□ -0.57
LDLR-210ENST00000559340 KCNA3P22001 575 aa11.46□□□□□ -0.57
LDLR-210ENST00000559340 IRX6P78412 446 aaPredicted RBP11.46□□□□□ -0.57
LDLR-210ENST00000559340 LDHAL6AQ6ZMR3 332 aa11.46□□□□□ -0.57
LDLR-210ENST00000559340 SP8Q8IXZ3 490 aa11.46□□□□□ -0.57
LDLR-210ENST00000559340 SSH3Q8TE77 659 aa11.46□□□□□ -0.57
LDLR-210ENST00000559340 ANKRD2Q9GZV1 360 aa11.46□□□□□ -0.57
LDLR-210ENST00000559340 RWDD1Q9H446 243 aaPredicted RBP11.46□□□□□ -0.57
LDLR-210ENST00000559340 COPRSQ9NQ92 184 aa11.46□□□□□ -0.57
LDLR-210ENST00000559340 SEC31BQ9NQW1 1179 aa11.46□□□□□ -0.57
LDLR-210ENST00000559340 UTRNP46939 3433 aa11.45□□□□□ -0.58
LDLR-210ENST00000559340 PPEF1O14829 653 aaPredicted RBP11.45□□□□□ -0.58
LDLR-210ENST00000559340 YBX3P16989 372 aaKnown RBP eCLIP11.45□□□□□ -0.583e-9■□□□□ 8.2
LDLR-210ENST00000559340 OS9Q13438 667 aaPredicted RBP11.45□□□□□ -0.58
LDLR-210ENST00000559340 POLA2Q14181 598 aa11.45□□□□□ -0.58
LDLR-210ENST00000559340 PRPF40BQ6NWY9 871 aaKnown RBP11.45□□□□□ -0.58
LDLR-210ENST00000559340 CELF1Q92879 486 aaKnown RBP11.45□□□□□ -0.58
LDLR-210ENST00000559340 ATP6V0A2Q9Y487 856 aa11.45□□□□□ -0.58
LDLR-210ENST00000559340 MROH5Q6ZUA9 1318 aa11.44□□□□□ -0.58
LDLR-210ENST00000559340 EYA2O00167 538 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms