RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 KDM5AP29375 1690 aaKnown RBP11.08□□□□□ -0.64
SPG11-213ENST00000558988 TMEM94Q12767 1356 aa11.08□□□□□ -0.64
SPG11-213ENST00000558988 TRIM66O15016 1216 aa11.08□□□□□ -0.64
SPG11-213ENST00000558988 GIGYF1O75420 1035 aaPredicted RBP11.08□□□□□ -0.64
SPG11-213ENST00000558988 CSB-PGBD3P0DP91 1061 aa11.08□□□□□ -0.64
SPG11-213ENST00000558988 CC2D2BQ6DHV5 1058 aa11.08□□□□□ -0.64
SPG11-213ENST00000558988 PGBD3Q8N328 593 aa11.08□□□□□ -0.64
SPG11-213ENST00000558988 EPS8L1Q8TE68 723 aa11.08□□□□□ -0.64
SPG11-213ENST00000558988 ARHGEF10LQ9HCE6 1279 aa11.08□□□□□ -0.64
SPG11-213ENST00000558988 IQGAP3Q86VI3 1631 aa11.07□□□□□ -0.64
SPG11-213ENST00000558988 COBLO75128 1261 aa11.07□□□□□ -0.64
SPG11-213ENST00000558988 KCNA6P17658 529 aa11.07□□□□□ -0.64
SPG11-213ENST00000558988 POLR3EQ9NVU0 708 aa11.07□□□□□ -0.64
SPG11-213ENST00000558988 XIRP1Q702N8 1843 aaKnown RBP11.07□□□□□ -0.64
SPG11-213ENST00000558988 MED1Q15648 1581 aaPredicted RBP11.07□□□□□ -0.64
SPG11-213ENST00000558988 TMEM131LA2VDJ0 1609 aa11.06□□□□□ -0.64
SPG11-213ENST00000558988 CYP2U1Q7Z449 544 aa11.06□□□□□ -0.64
SPG11-213ENST00000558988 C14orf37Q86TY3 774 aa11.06□□□□□ -0.64
SPG11-213ENST00000558988 EFHC2Q5JST6 749 aa11.05□□□□□ -0.64
SPG11-213ENST00000558988 KLF15Q9UIH9 416 aa11.05□□□□□ -0.64
SPG11-213ENST00000558988 ZFYVE9O95405 1425 aa11.04□□□□□ -0.64
SPG11-213ENST00000558988 MSX1P28360 303 aa11.04□□□□□ -0.64
SPG11-213ENST00000558988 ZNF326Q5BKZ1 582 aaKnown RBP11.04□□□□□ -0.64
SPG11-213ENST00000558988 PLEKHG1Q9ULL1 1385 aa11.03□□□□□ -0.64
SPG11-213ENST00000558988 SOCS7O14512 581 aa11.03□□□□□ -0.64
SPG11-213ENST00000558988 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.03□□□□□ -0.64
SPG11-213ENST00000558988 RAB6BQ9NRW1 208 aa11.03□□□□□ -0.64
SPG11-213ENST00000558988 RRBP1Q9P2E9 1410 aaKnown RBP11.02□□□□□ -0.64
SPG11-213ENST00000558988 SCTRP47872 440 aa11.02□□□□□ -0.65
SPG11-213ENST00000558988 FCHSD1Q86WN1 690 aa11.02□□□□□ -0.65
SPG11-213ENST00000558988 MSH6P52701 1360 aa11.02□□□□□ -0.65
SPG11-213ENST00000558988 NKTRP30414 1462 aaKnown RBP11.01□□□□□ -0.65
SPG11-213ENST00000558988 APBA3O96018 575 aa11.01□□□□□ -0.65
SPG11-213ENST00000558988 CENPCQ03188 943 aa11.01□□□□□ -0.65
SPG11-213ENST00000558988 MCTP1Q6DN14 999 aa11.01□□□□□ -0.65
SPG11-213ENST00000558988 NWD1Q149M9 1564 aa11.01□□□□□ -0.65
SPG11-213ENST00000558988 SPHKAPQ2M3C7 1700 aa11.01□□□□□ -0.65
SPG11-213ENST00000558988 ADH6P28332 368 aa11□□□□□ -0.65
SPG11-213ENST00000558988 NAIPQ13075 1403 aa11□□□□□ -0.65
SPG11-213ENST00000558988 ROBO1Q9Y6N7 1651 aa10.99□□□□□ -0.65
SPG11-213ENST00000558988 PNMA1Q8ND90 353 aa10.99□□□□□ -0.65
SPG11-213ENST00000558988 CNKSR1Q969H4 720 aa10.99□□□□□ -0.65
SPG11-213ENST00000558988 OSBPL3Q9H4L5 887 aa10.99□□□□□ -0.65
SPG11-213ENST00000558988 CHD2O14647 1828 aaKnown RBP10.98□□□□□ -0.65
SPG11-213ENST00000558988 PRRT3Q5FWE3 981 aa10.98□□□□□ -0.65
SPG11-213ENST00000558988 ZSCAN10Q96SZ4 725 aaPredicted RBP10.98□□□□□ -0.65
SPG11-213ENST00000558988 ESYT1Q9BSJ8 1104 aa10.98□□□□□ -0.65
SPG11-213ENST00000558988 TBX22Q9Y458 520 aa10.98□□□□□ -0.65
SPG11-213ENST00000558988 ADAMTS13Q76LX8 1427 aa10.98□□□□□ -0.65
SPG11-213ENST00000558988 TRAK2O60296 914 aa10.97□□□□□ -0.65
SPG11-213ENST00000558988 IL2RAP01589 272 aa10.97□□□□□ -0.65
SPG11-213ENST00000558988 C4orf17Q53FE4 359 aa10.97□□□□□ -0.65
SPG11-213ENST00000558988 ZC3H15Q8WU90 426 aaKnown RBP10.97□□□□□ -0.65
SPG11-213ENST00000558988 CLTCL1P53675 1640 aa10.97□□□□□ -0.65
SPG11-213ENST00000558988 TRPM2O94759 1503 aa10.96□□□□□ -0.65
SPG11-213ENST00000558988 FAM135BQ49AJ0 1406 aa10.96□□□□□ -0.65
SPG11-213ENST00000558988 SLAIN2Q9P270 581 aa10.96□□□□□ -0.65
SPG11-213ENST00000558988 AMOTL2Q9Y2J4 779 aa10.96□□□□□ -0.65
SPG11-213ENST00000558988 PCDHB9Q9Y5E1 797 aa10.96□□□□□ -0.65
SPG11-213ENST00000558988 DIP2AQ14689 1571 aa10.95□□□□□ -0.66
SPG11-213ENST00000558988 HFM1A2PYH4 1435 aa10.95□□□□□ -0.66
SPG11-213ENST00000558988 SPDYE3A6NKU9 549 aa10.95□□□□□ -0.66
SPG11-213ENST00000558988 GNASQ5JWF2 1037 aa10.95□□□□□ -0.66
SPG11-213ENST00000558988 CCDC125Q86Z20 511 aa10.95□□□□□ -0.66
SPG11-213ENST00000558988 FAM229AH3BQW9 127 aa10.94□□□□□ -0.66
SPG11-213ENST00000558988 YBX3P16989 372 aaKnown RBP eCLIP10.94□□□□□ -0.66
SPG11-213ENST00000558988 ATF3P18847 181 aa10.94□□□□□ -0.66
SPG11-213ENST00000558988 ZCCHC2Q9C0B9 1178 aaKnown RBP10.94□□□□□ -0.66
SPG11-213ENST00000558988 RSPH6AQ9H0K4 717 aa10.94□□□□□ -0.66
SPG11-213ENST00000558988 CRISPLD1Q9H336 500 aa10.94□□□□□ -0.66
SPG11-213ENST00000558988 HMX1Q9NP08 348 aaPredicted RBP10.94□□□□□ -0.66
SPG11-213ENST00000558988 HCN2Q9UL51 889 aa10.94□□□□□ -0.66
SPG11-213ENST00000558988 PHLPP1O60346 1717 aa10.94□□□□□ -0.66
SPG11-213ENST00000558988 PTPRUQ92729 1446 aa10.93□□□□□ -0.66
SPG11-213ENST00000558988 KIF1BO60333 1816 aa10.93□□□□□ -0.66
SPG11-213ENST00000558988 H2AFB1P0C5Y9 115 aa10.93□□□□□ -0.66
SPG11-213ENST00000558988 H2AFB2P0C5Z0 115 aa10.93□□□□□ -0.66
SPG11-213ENST00000558988 TMEM214Q6NUQ4 689 aaKnown RBP10.93□□□□□ -0.66
SPG11-213ENST00000558988 PCDHGC4Q9Y5F7 938 aa10.93□□□□□ -0.66
SPG11-213ENST00000558988 METP08581 1390 aa10.92□□□□□ -0.66
SPG11-213ENST00000558988 NRXN3Q9Y4C0 1643 aa10.92□□□□□ -0.66
SPG11-213ENST00000558988 AP1G2O75843 785 aa10.92□□□□□ -0.66
SPG11-213ENST00000558988 DNAAF2Q9NVR5 837 aaKnown RBP10.92□□□□□ -0.66
SPG11-213ENST00000558988 HRH3Q9Y5N1 445 aa10.92□□□□□ -0.66
SPG11-213ENST00000558988 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.92□□□□□ -0.66
SPG11-213ENST00000558988 PIK3R4Q99570 1358 aa10.91□□□□□ -0.66
SPG11-213ENST00000558988 NEXMIFQ5QGS0 1516 aa10.91□□□□□ -0.66
SPG11-213ENST00000558988 PAX4O43316 350 aa10.91□□□□□ -0.66
SPG11-213ENST00000558988 GNRH1P01148 92 aa10.91□□□□□ -0.66
SPG11-213ENST00000558988 TXKP42681 527 aa10.91□□□□□ -0.66
SPG11-213ENST00000558988 FIGNL1Q6PIW4 674 aa10.91□□□□□ -0.66
SPG11-213ENST00000558988 FHDC1Q9C0D6 1143 aaPredicted RBP10.91□□□□□ -0.66
SPG11-213ENST00000558988 C19orf44Q9H6X5 657 aa10.91□□□□□ -0.66
SPG11-213ENST00000558988 AVENQ9NQS1 362 aaPredicted RBP10.91□□□□□ -0.66
SPG11-213ENST00000558988 SETBP1Q9Y6X0 1596 aa10.9□□□□□ -0.66
SPG11-213ENST00000558988 CD33P20138 364 aa10.9□□□□□ -0.66
SPG11-213ENST00000558988 PCBP4P57723 403 aaKnown RBP10.9□□□□□ -0.66
SPG11-213ENST00000558988 RNF20Q5VTR2 975 aa10.9□□□□□ -0.66
SPG11-213ENST00000558988 ARID1BQ8NFD5 2236 aaPredicted RBP10.9□□□□□ -0.66
SPG11-213ENST00000558988 GTF2E1P29083 439 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms