RNA–Protein interactions for RNA: ENST00000558880.1

TRAF3-206, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-206ENST00000558880 ARXQ96QS3 562 aa9.49□□□□□ -0.89
TRAF3-206ENST00000558880 ATG3Q9NT62 314 aa9.49□□□□□ -0.89
TRAF3-206ENST00000558880 RGPD3A6NKT7 1758 aaPredicted RBP9.49□□□□□ -0.89
TRAF3-206ENST00000558880 RGPD4Q7Z3J3 1758 aa9.49□□□□□ -0.89
TRAF3-206ENST00000558880 IL16Q14005 1332 aa9.49□□□□□ -0.89
TRAF3-206ENST00000558880 SBF2Q86WG5 1849 aa9.49□□□□□ -0.89
TRAF3-206ENST00000558880 HSP90AB1P08238 724 aaKnown RBP9.48□□□□□ -0.89
TRAF3-206ENST00000558880 CD46P15529 392 aa9.48□□□□□ -0.89
TRAF3-206ENST00000558880 GCGRP47871 477 aa9.48□□□□□ -0.89
TRAF3-206ENST00000558880 SLC39A6Q13433 755 aa9.48□□□□□ -0.89
TRAF3-206ENST00000558880 SLC15A2Q16348 729 aa9.48□□□□□ -0.89
TRAF3-206ENST00000558880 KRT24Q2M2I5 525 aa9.48□□□□□ -0.89
TRAF3-206ENST00000558880 TMUB1Q9BVT8 246 aa9.48□□□□□ -0.89
TRAF3-206ENST00000558880 MBIPQ9NS73 344 aa9.48□□□□□ -0.89
TRAF3-206ENST00000558880 FAM217BQ9NTX9 383 aaPredicted RBP9.48□□□□□ -0.89
TRAF3-206ENST00000558880 ASAP1Q9ULH1 1129 aa9.48□□□□□ -0.89
TRAF3-206ENST00000558880 DLG5Q8TDM6 1919 aa9.48□□□□□ -0.89
TRAF3-206ENST00000558880 KCPQ6ZWJ8 1503 aa9.47□□□□□ -0.89
TRAF3-206ENST00000558880 FUT2Q10981 343 aa9.47□□□□□ -0.89
TRAF3-206ENST00000558880 TAF7Q15545 349 aaPredicted RBP9.47□□□□□ -0.89
TRAF3-206ENST00000558880 PARP9Q8IXQ6 854 aa9.47□□□□□ -0.89
TRAF3-206ENST00000558880 NKX2-3Q8TAU0 364 aa9.47□□□□□ -0.89
TRAF3-206ENST00000558880 TSR2Q969E8 191 aaKnown RBP9.47□□□□□ -0.89
TRAF3-206ENST00000558880 YTHDC1Q96MU7 727 aaKnown RBP9.47□□□□□ -0.89
TRAF3-206ENST00000558880 IFT57Q9NWB7 429 aa9.47□□□□□ -0.89
TRAF3-206ENST00000558880 SIPA1L3O60292 1781 aaPredicted RBP9.46□□□□□ -0.9
TRAF3-206ENST00000558880 SCN11AQ9UI33 1791 aa9.46□□□□□ -0.9
TRAF3-206ENST00000558880 PRAMEF22A3QJZ6 481 aa9.46□□□□□ -0.9
TRAF3-206ENST00000558880 TLL1O43897 1013 aa9.46□□□□□ -0.9
TRAF3-206ENST00000558880 HSPA6P17066 643 aa9.46□□□□□ -0.9
TRAF3-206ENST00000558880 CABP4P57796 275 aa9.46□□□□□ -0.9
TRAF3-206ENST00000558880 EIF4A1P60842 406 aaKnown RBP9.46□□□□□ -0.9
TRAF3-206ENST00000558880 LMOD3Q0VAK6 560 aa9.46□□□□□ -0.9
TRAF3-206ENST00000558880 TXNRD1Q16881 649 aa9.46□□□□□ -0.9
TRAF3-206ENST00000558880 GIGYF2Q6Y7W6 1299 aaKnown RBP9.46□□□□□ -0.9
TRAF3-206ENST00000558880 TSPYL6Q8N831 410 aa9.46□□□□□ -0.9
TRAF3-206ENST00000558880 RTF1Q92541 710 aaKnown RBP9.46□□□□□ -0.9
TRAF3-206ENST00000558880 FANCIQ9NVI1 1328 aa9.46□□□□□ -0.9
TRAF3-206ENST00000558880 DOT1LQ8TEK3 1739 aa9.45□□□□□ -0.9
TRAF3-206ENST00000558880 NEFMP07197 916 aa9.45□□□□□ -0.9
TRAF3-206ENST00000558880 SSTR3P32745 418 aaPredicted RBP9.45□□□□□ -0.9
TRAF3-206ENST00000558880 ZNF790Q6PG37 636 aa9.45□□□□□ -0.9
TRAF3-206ENST00000558880 C8orf58Q8NAV2 365 aa9.45□□□□□ -0.9
TRAF3-206ENST00000558880 ZNF496Q96IT1 587 aaPredicted RBP9.45□□□□□ -0.9
TRAF3-206ENST00000558880 BABAM1Q9NWV8 329 aa9.45□□□□□ -0.9
TRAF3-206ENST00000558880 PAPPAQ13219 1627 aa9.45□□□□□ -0.9
TRAF3-206ENST00000558880 NHSQ6T4R5 1651 aa9.45□□□□□ -0.9
TRAF3-206ENST00000558880 BTBD11A6QL63 1104 aa9.44□□□□□ -0.9
TRAF3-206ENST00000558880 ZPR1O75312 459 aa9.44□□□□□ -0.9
TRAF3-206ENST00000558880 PDE4DQ08499 809 aa9.44□□□□□ -0.9
TRAF3-206ENST00000558880 TPRNQ4KMQ1 711 aa9.44□□□□□ -0.9
TRAF3-206ENST00000558880 ZNF526Q8TF50 670 aaPredicted RBP9.44□□□□□ -0.9
TRAF3-206ENST00000558880 LRRC4BQ9NT99 713 aa9.44□□□□□ -0.9
TRAF3-206ENST00000558880 TMOD3Q9NYL9 352 aa9.44□□□□□ -0.9
TRAF3-206ENST00000558880 E9PSI1 815 aa9.43□□□□□ -0.9
TRAF3-206ENST00000558880 GNAI1P63096 354 aa9.43□□□□□ -0.9
TRAF3-206ENST00000558880 TEFQ10587 303 aa9.43□□□□□ -0.9
TRAF3-206ENST00000558880 ITPK1Q13572 414 aa9.43□□□□□ -0.9
TRAF3-206ENST00000558880 LRP10Q7Z4F1 713 aa9.43□□□□□ -0.9
TRAF3-206ENST00000558880 KDM3BQ7LBC6 1761 aa9.42□□□□□ -0.9
TRAF3-206ENST00000558880 ATP10DQ9P241 1426 aa9.42□□□□□ -0.9
TRAF3-206ENST00000558880 PALLDQ8WX93 1383 aa9.42□□□□□ -0.9
TRAF3-206ENST00000558880 VAMP4O75379 141 aa9.42□□□□□ -0.9
TRAF3-206ENST00000558880 ATP6V1AP38606 617 aa9.42□□□□□ -0.9
TRAF3-206ENST00000558880 KCNQ4P56696 695 aa9.42□□□□□ -0.9
TRAF3-206ENST00000558880 EXOSC9Q06265 439 aaKnown RBP9.42□□□□□ -0.9
TRAF3-206ENST00000558880 AMIGO3Q86WK7 504 aa9.42□□□□□ -0.9
TRAF3-206ENST00000558880 HLA-CQ95604 372 aa9.42□□□□□ -0.9
TRAF3-206ENST00000558880 SYTL4Q96C24 671 aaPredicted RBP9.42□□□□□ -0.9
TRAF3-206ENST00000558880 GPBP1L1Q9HC44 474 aaPredicted RBP9.42□□□□□ -0.9
TRAF3-206ENST00000558880 TSPYL4Q9UJ04 414 aa9.42□□□□□ -0.9
TRAF3-206ENST00000558880 ITGB4P16144 1822 aa9.42□□□□□ -0.9
TRAF3-206ENST00000558880 KDM4AO75164 1064 aa9.41□□□□□ -0.9
TRAF3-206ENST00000558880 NR1I2O75469 434 aa9.41□□□□□ -0.9
TRAF3-206ENST00000558880 MORN1Q5T089 497 aa9.41□□□□□ -0.9
TRAF3-206ENST00000558880 SCUBE3Q8IX30 993 aa9.41□□□□□ -0.9
TRAF3-206ENST00000558880 NLGN2Q8NFZ4 835 aa9.41□□□□□ -0.9
TRAF3-206ENST00000558880 LAS1LQ9Y4W2 734 aaKnown RBP9.41□□□□□ -0.9
TRAF3-206ENST00000558880 USP16Q9Y5T5 823 aa9.41□□□□□ -0.9
TRAF3-206ENST00000558880 UBR2Q8IWV8 1755 aa9.4□□□□□ -0.9
TRAF3-206ENST00000558880 LOC102724428A0A0B4J2F2 783 aa9.4□□□□□ -0.9
TRAF3-206ENST00000558880 PTCD1O75127 700 aaKnown RBP9.4□□□□□ -0.9
TRAF3-206ENST00000558880 MS4A1P11836 297 aa9.4□□□□□ -0.9
TRAF3-206ENST00000558880 POLD1P28340 1107 aa9.4□□□□□ -0.9
TRAF3-206ENST00000558880 SIK1P57059 783 aa9.4□□□□□ -0.9
TRAF3-206ENST00000558880 CALD1Q05682 793 aaKnown RBP9.4□□□□□ -0.9
TRAF3-206ENST00000558880 DNAJC10Q8IXB1 793 aa9.4□□□□□ -0.9
TRAF3-206ENST00000558880 SLC27A5Q9Y2P5 690 aa9.4□□□□□ -0.9
TRAF3-206ENST00000558880 ELL2O00472 640 aaPredicted RBP9.39□□□□□ -0.91
TRAF3-206ENST00000558880 CYP19A1P11511 503 aaPredicted RBP9.39□□□□□ -0.91
TRAF3-206ENST00000558880 YBX3P16989 372 aaKnown RBP eCLIP9.39□□□□□ -0.91
TRAF3-206ENST00000558880 NBPF10Q6P3W6 841 aaKnown RBP9.39□□□□□ -0.91
TRAF3-206ENST00000558880 INTS5Q6P9B9 1019 aaKnown RBP9.39□□□□□ -0.91
TRAF3-206ENST00000558880 NUTM1Q86Y26 1132 aa9.39□□□□□ -0.91
TRAF3-206ENST00000558880 NBPF15Q8N660 670 aa9.39□□□□□ -0.91
TRAF3-206ENST00000558880 LINC00116Q8NCU8 138 aa9.39□□□□□ -0.91
TRAF3-206ENST00000558880 BEGAINQ9BUH8 593 aa9.39□□□□□ -0.91
TRAF3-206ENST00000558880 BTAF1O14981 1849 aa9.39□□□□□ -0.91
TRAF3-206ENST00000558880 VIRMAQ69YN4 1812 aaKnown RBP9.38□□□□□ -0.91
TRAF3-206ENST00000558880 GUCA2AQ02747 115 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms