RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 CANXP27824 592 aaKnown RBP10.05□□□□□ -0.8
SPG11-205ENST00000558080 A0A0G2JLW4 131 aa10.04□□□□□ -0.8
SPG11-205ENST00000558080 ZPR1O75312 459 aa10.04□□□□□ -0.8
SPG11-205ENST00000558080 FCHSD2O94868 740 aa10.04□□□□□ -0.8
SPG11-205ENST00000558080 USPL1Q5W0Q7 1092 aa10.04□□□□□ -0.8
SPG11-205ENST00000558080 ZNF790Q6PG37 636 aa10.04□□□□□ -0.8
SPG11-205ENST00000558080 VSIG10Q8N0Z9 540 aa10.04□□□□□ -0.8
SPG11-205ENST00000558080 NKX2-3Q8TAU0 364 aa10.04□□□□□ -0.8
SPG11-205ENST00000558080 ZNF496Q96IT1 587 aaPredicted RBP10.04□□□□□ -0.8
SPG11-205ENST00000558080 ZBTB1Q9Y2K1 713 aa10.04□□□□□ -0.8
SPG11-205ENST00000558080 SBF1O95248 1867 aa10.04□□□□□ -0.8
SPG11-205ENST00000558080 CACNA1SQ13698 1873 aa10.04□□□□□ -0.8
SPG11-205ENST00000558080 SOS1Q07889 1333 aaPredicted RBP10.04□□□□□ -0.8
SPG11-205ENST00000558080 USP42Q9H9J4 1324 aaKnown RBP10.04□□□□□ -0.8
SPG11-205ENST00000558080 KCNQ3O43525 872 aa10.03□□□□□ -0.8
SPG11-205ENST00000558080 DCTN1Q14203 1278 aa10.03□□□□□ -0.8
SPG11-205ENST00000558080 C10orf71Q711Q0 1435 aa10.03□□□□□ -0.8
SPG11-205ENST00000558080 MCM10Q7L590 875 aa10.03□□□□□ -0.8
SPG11-205ENST00000558080 RTF1Q92541 710 aaKnown RBP10.03□□□□□ -0.8
SPG11-205ENST00000558080 PXDNLA1KZ92 1463 aa10.03□□□□□ -0.8
SPG11-205ENST00000558080 COL15A1P39059 1388 aa10.02□□□□□ -0.8
SPG11-205ENST00000558080 CEMIPQ8WUJ3 1361 aa10.02□□□□□ -0.8
SPG11-205ENST00000558080 HEG1Q9ULI3 1381 aa10.02□□□□□ -0.8
SPG11-205ENST00000558080 NRXN2Q9P2S2 1712 aa10.02□□□□□ -0.8
SPG11-205ENST00000558080 BTBD11A6QL63 1104 aa10.02□□□□□ -0.81
SPG11-205ENST00000558080 STARD3NLO95772 234 aa10.02□□□□□ -0.81
SPG11-205ENST00000558080 DPEP1P16444 411 aa10.02□□□□□ -0.81
SPG11-205ENST00000558080 SLC4A3P48751 1232 aa10.02□□□□□ -0.81
SPG11-205ENST00000558080 TGFB2P61812 414 aa10.02□□□□□ -0.81
SPG11-205ENST00000558080 DDR1Q08345 913 aa10.02□□□□□ -0.81
SPG11-205ENST00000558080 DDX10Q13206 875 aaKnown RBP10.02□□□□□ -0.81
SPG11-205ENST00000558080 FMNL2Q96PY5 1086 aa10.02□□□□□ -0.81
SPG11-205ENST00000558080 ANKRD31Q8N7Z5 1873 aa10.02□□□□□ -0.81
SPG11-205ENST00000558080 KDM3BQ7LBC6 1761 aa10.01□□□□□ -0.81
SPG11-205ENST00000558080 DLEC1Q9Y238 1755 aa10.01□□□□□ -0.81
SPG11-205ENST00000558080 A1BGP04217 495 aa10.01□□□□□ -0.81
SPG11-205ENST00000558080 TM4SF1P30408 202 aa10.01□□□□□ -0.81
SPG11-205ENST00000558080 GGCXP38435 758 aa10.01□□□□□ -0.81
SPG11-205ENST00000558080 COPS2P61201 443 aa10.01□□□□□ -0.81
SPG11-205ENST00000558080 PRR14Q9BWN1 585 aa10.01□□□□□ -0.81
SPG11-205ENST00000558080 RTN4Q9NQC3 1192 aaKnown RBP10.01□□□□□ -0.81
SPG11-205ENST00000558080 NARFQ9UHQ1 456 aa10.01□□□□□ -0.81
SPG11-205ENST00000558080 BCS1LQ9Y276 419 aa10.01□□□□□ -0.81
SPG11-205ENST00000558080 ZNF330Q9Y3S2 320 aaPredicted RBP10.01□□□□□ -0.81
SPG11-205ENST00000558080 BCORQ6W2J9 1755 aa10.01□□□□□ -0.81
SPG11-205ENST00000558080 SCN7AQ01118 1682 aa10□□□□□ -0.81
SPG11-205ENST00000558080 POLRMTO00411 1230 aaKnown RBP10□□□□□ -0.81
SPG11-205ENST00000558080 NEFMP07197 916 aa10□□□□□ -0.81
SPG11-205ENST00000558080 EIF5P55010 431 aaKnown RBP10□□□□□ -0.81
SPG11-205ENST00000558080 TMUB1Q9BVT8 246 aa10□□□□□ -0.81
SPG11-205ENST00000558080 TEX13AQ9BXU3 409 aaPredicted RBP10□□□□□ -0.81
SPG11-205ENST00000558080 LAMB4A4D0S4 1761 aa10□□□□□ -0.81
SPG11-205ENST00000558080 NUP98P52948 1817 aa10□□□□□ -0.81
SPG11-205ENST00000558080 A0A087WZG4 1122 aa9.99□□□□□ -0.81
SPG11-205ENST00000558080 PRAMEF22A3QJZ6 481 aa9.99□□□□□ -0.81
SPG11-205ENST00000558080 HTATSF1O43719 755 aaKnown RBP9.99□□□□□ -0.81
SPG11-205ENST00000558080 PIP4K2AP48426 406 aaPredicted RBP9.99□□□□□ -0.81
SPG11-205ENST00000558080 NFIXQ14938 502 aa9.99□□□□□ -0.81
SPG11-205ENST00000558080 BICDL1Q6ZP65 573 aa9.99□□□□□ -0.81
SPG11-205ENST00000558080 MIS18AQ9NYP9 233 aa9.99□□□□□ -0.81
SPG11-205ENST00000558080 TBC1D2BQ9UPU7 963 aa9.99□□□□□ -0.81
SPG11-205ENST00000558080 USP16Q9Y5T5 823 aa9.99□□□□□ -0.81
SPG11-205ENST00000558080 ATP10DQ9P241 1426 aa9.99□□□□□ -0.81
SPG11-205ENST00000558080 SERPINB2P05120 415 aa9.98□□□□□ -0.81
SPG11-205ENST00000558080 KCNA3P22001 575 aa9.98□□□□□ -0.81
SPG11-205ENST00000558080 CHRNA5P30532 468 aa9.98□□□□□ -0.81
SPG11-205ENST00000558080 TAF7Q15545 349 aaPredicted RBP9.98□□□□□ -0.81
SPG11-205ENST00000558080 DIEXFQ68CQ4 756 aaKnown RBP9.98□□□□□ -0.81
SPG11-205ENST00000558080 ARHGAP27Q6ZUM4 889 aa9.98□□□□□ -0.81
SPG11-205ENST00000558080 ZNF526Q8TF50 670 aaPredicted RBP9.98□□□□□ -0.81
SPG11-205ENST00000558080 PLEKHF1Q96S99 279 aa9.98□□□□□ -0.81
SPG11-205ENST00000558080 SNRPA1P09661 255 aaKnown RBP9.97□□□□□ -0.81
SPG11-205ENST00000558080 IL6STP40189 918 aaPredicted RBP9.97□□□□□ -0.81
SPG11-205ENST00000558080 MLLT3P42568 568 aaPredicted RBP9.97□□□□□ -0.81
SPG11-205ENST00000558080 PTGDRQ13258 359 aa9.97□□□□□ -0.81
SPG11-205ENST00000558080 RALBP1Q15311 655 aa9.97□□□□□ -0.81
SPG11-205ENST00000558080 NPM2Q86SE8 214 aaKnown RBP9.97□□□□□ -0.81
SPG11-205ENST00000558080 THUMPD2Q9BTF0 503 aaKnown RBP9.97□□□□□ -0.81
SPG11-205ENST00000558080 PIM2Q9P1W9 311 aa9.97□□□□□ -0.81
SPG11-205ENST00000558080 GIGYF1O75420 1035 aaPredicted RBP9.96□□□□□ -0.82
SPG11-205ENST00000558080 NFE2L2Q16236 605 aa9.96□□□□□ -0.82
SPG11-205ENST00000558080 TBC1D9BQ66K14 1250 aa9.96□□□□□ -0.82
SPG11-205ENST00000558080 PNNQ9H307 717 aaKnown RBP9.96□□□□□ -0.82
SPG11-205ENST00000558080 PDZRN3Q9UPQ7 1066 aa9.96□□□□□ -0.82
SPG11-205ENST00000558080 PCDHB3Q9Y5E6 796 aa9.96□□□□□ -0.82
SPG11-205ENST00000558080 MAPK8IP3Q9UPT6 1336 aa9.96□□□□□ -0.82
SPG11-205ENST00000558080 COL11A2P13942 1736 aaPredicted RBP9.96□□□□□ -0.82
SPG11-205ENST00000558080 DICER1Q9UPY3 1922 aaKnown RBP9.95□□□□□ -0.82
SPG11-205ENST00000558080 DNAJB2P25686 324 aa9.95□□□□□ -0.82
SPG11-205ENST00000558080 C1QTNF8P60827 252 aa9.95□□□□□ -0.82
SPG11-205ENST00000558080 DALRD3Q5D0E6 543 aaKnown RBP9.95□□□□□ -0.82
SPG11-205ENST00000558080 DZIP3Q86Y13 1208 aaKnown RBP9.95□□□□□ -0.82
SPG11-205ENST00000558080 CCDC24Q8N4L8 307 aa9.95□□□□□ -0.82
SPG11-205ENST00000558080 GPBP1L1Q9HC44 474 aaPredicted RBP9.95□□□□□ -0.82
SPG11-205ENST00000558080 ADCY9O60503 1353 aa9.95□□□□□ -0.82
SPG11-205ENST00000558080 CARMIL3Q8ND23 1372 aa9.95□□□□□ -0.82
SPG11-205ENST00000558080 SLX4Q8IY92 1834 aa9.95□□□□□ -0.82
SPG11-205ENST00000558080 MYBBP1AQ9BQG0 1328 aaKnown RBP9.94□□□□□ -0.82
SPG11-205ENST00000558080 CAMTA2O94983 1202 aa9.94□□□□□ -0.82
SPG11-205ENST00000558080 C2CD5Q86YS7 1000 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms