RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 ILDR2Q71H61 639 aa6.09□□□□□ -1.43
TMEM260-210ENST00000556422 NUTM1Q86Y26 1132 aa6.09□□□□□ -1.43
TMEM260-210ENST00000556422 LINS1Q8NG48 757 aa6.09□□□□□ -1.43
TMEM260-210ENST00000556422 GPBP1L1Q9HC44 474 aaPredicted RBP6.09□□□□□ -1.43
TMEM260-210ENST00000556422 CHMP5Q9NZZ3 219 aa6.09□□□□□ -1.43
TMEM260-210ENST00000556422 WNK3Q9BYP7 1800 aa6.09□□□□□ -1.43
TMEM260-210ENST00000556422 ERC2O15083 957 aa6.09□□□□□ -1.43
TMEM260-210ENST00000556422 CHMLP26374 656 aa6.09□□□□□ -1.43
TMEM260-210ENST00000556422 PIP4K2AP48426 406 aaPredicted RBP6.09□□□□□ -1.43
TMEM260-210ENST00000556422 CCDC82Q8N4S0 544 aa6.09□□□□□ -1.43
TMEM260-210ENST00000556422 GRM8O00222 908 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 PES1O00541 588 aaKnown RBP6.08□□□□□ -1.44
TMEM260-210ENST00000556422 RAB11FIP3O75154 756 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 KCNJ4P48050 445 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 AIMP1Q12904 312 aaKnown RBP6.08□□□□□ -1.44
TMEM260-210ENST00000556422 ZRSR2Q15696 482 aaKnown RBP6.08□□□□□ -1.44
TMEM260-210ENST00000556422 SUCLG2Q96I99 432 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 ESYT1Q9BSJ8 1104 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 PRDM11Q9NQV5 511 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 COL16A1Q07092 1604 aaPredicted RBP6.08□□□□□ -1.44
TMEM260-210ENST00000556422 USP42Q9H9J4 1324 aaKnown RBP6.08□□□□□ -1.44
TMEM260-210ENST00000556422 MYL6BP14649 208 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 KIF1BPQ96EK5 621 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 PA2G4Q9UQ80 394 aaKnown RBP6.08□□□□□ -1.44
TMEM260-210ENST00000556422 TNS2Q63HR2 1409 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 GOLGA6L3A6NEY3 463 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 NEURL1BA8MQ27 555 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 TDO2P48775 406 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 MYBPC2Q14324 1141 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 RABEP1Q15276 862 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 COPS6Q7L5N1 327 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 CCDC125Q86Z20 511 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 XAGE3Q8WTP9 111 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 GTPBP4Q9BZE4 634 aaKnown RBP6.08□□□□□ -1.44
TMEM260-210ENST00000556422 BICC1Q9H694 974 aaKnown RBP6.08□□□□□ -1.44
TMEM260-210ENST00000556422 YY1AP1Q9H869 796 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 PNMA2Q9UL42 364 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 PLCH1Q4KWH8 1693 aa6.08□□□□□ -1.44
TMEM260-210ENST00000556422 REC8O95072 547 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 SNRPA1P09661 255 aaKnown RBP6.07□□□□□ -1.44
TMEM260-210ENST00000556422 MCM4P33991 863 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 C9orf78Q9NZ63 289 aaPredicted RBP6.07□□□□□ -1.44
TMEM260-210ENST00000556422 PALD1Q9ULE6 856 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 ROBO1Q9Y6N7 1651 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 PCDH11XQ9BZA7 1347 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 PCDH11YQ9BZA8 1340 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 SSFA2P28290 1259 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 RAB3GAP1Q15042 981 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 EPHA10Q5JZY3 1008 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 ZNF280DQ6N043 979 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 IL17RAQ96F46 866 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 COL22A1Q8NFW1 1626 aaPredicted RBP6.07□□□□□ -1.44
TMEM260-210ENST00000556422 TRIM6-TRIM34B2RNG4 842 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 SASH1O94885 1247 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 HSP90AB1P08238 724 aaKnown RBP6.07□□□□□ -1.44
TMEM260-210ENST00000556422 GCKRQ14397 625 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 NKX1-1Q15270 411 aaPredicted RBP6.07□□□□□ -1.44
TMEM260-210ENST00000556422 MFSD4BQ5TF39 518 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 TOM1L2Q6ZVM7 507 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 ANKRD13AQ8IZ07 590 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 RILPL2Q969X0 211 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 FMNL2Q96PY5 1086 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 TRIM34Q9BYJ4 488 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 PPME1Q9Y570 386 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 CEP83Q9Y592 693 aa6.07□□□□□ -1.44
TMEM260-210ENST00000556422 NBPF26B4DH59 902 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 DDX58O95786 925 aaKnown RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 MAP4K4O95819 1239 aaPredicted RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 CLCN1P35523 988 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 NBPF14Q5TI25 921 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 NBPF10Q6P3W6 841 aaKnown RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 LARP1Q6PKG0 1096 aaKnown RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 NBPF15Q8N660 670 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 PROCA1Q8NCQ7 364 aaPredicted RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 TNPO1Q92973 898 aaKnown RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 METTL22Q9BUU2 404 aaPredicted RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 ERICH4A6NGS2 130 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 SH3BP5O60239 455 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 CABP4P57796 275 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 WDR78Q5VTH9 848 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 RIC3Q7Z5B4 369 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 TTC5Q8N0Z6 440 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 ZCRB1Q8TBF4 217 aaKnown RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 CIZ1Q9ULV3 898 aaPredicted RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 FRMD4BQ9Y2L6 1034 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 COL14A1Q05707 1796 aaKnown RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 HMGN5P82970 282 aaKnown RBP6.06□□□□□ -1.44
TMEM260-210ENST00000556422 ANKRD13DQ6ZTN6 518 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 RAI14Q9P0K7 980 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 COL15A1P39059 1388 aa6.06□□□□□ -1.44
TMEM260-210ENST00000556422 SCP2P22307 547 aa6.05□□□□□ -1.44
TMEM260-210ENST00000556422 CASP7P55210 303 aa6.05□□□□□ -1.44
TMEM260-210ENST00000556422 L1TD1Q5T7N2 865 aaKnown RBP6.05□□□□□ -1.44
TMEM260-210ENST00000556422 KLHDC4Q8TBB5 520 aa6.05□□□□□ -1.44
TMEM260-210ENST00000556422 MYCBPQ99417 103 aaPredicted RBP6.05□□□□□ -1.44
TMEM260-210ENST00000556422 MYD88Q99836 296 aa6.05□□□□□ -1.44
TMEM260-210ENST00000556422 SUDS3Q9H7L9 328 aaPredicted RBP6.05□□□□□ -1.44
TMEM260-210ENST00000556422 TTC41PQ6P2S7 1318 aa6.05□□□□□ -1.44
TMEM260-210ENST00000556422 ANKRD62A6NC57 917 aa6.05□□□□□ -1.44
TMEM260-210ENST00000556422 IL2RBP14784 551 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms