RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 CRY2Q49AN0 593 aa17.59■□□□□ 0.41
VIPAS39-208ENST00000556412 DDX46Q7L014 1031 aaKnown RBP17.59■□□□□ 0.41
VIPAS39-208ENST00000556412 TTLL11Q8NHH1 800 aa17.59■□□□□ 0.41
VIPAS39-208ENST00000556412 CHMP4BQ9H444 224 aaKnown RBP17.59■□□□□ 0.41
VIPAS39-208ENST00000556412 NPR1P16066 1061 aa17.58■□□□□ 0.41
VIPAS39-208ENST00000556412 SF3B3Q15393 1217 aaKnown RBP17.58■□□□□ 0.41
VIPAS39-208ENST00000556412 FAM161AQ3B820 660 aa17.58■□□□□ 0.41
VIPAS39-208ENST00000556412 MASTLQ96GX5 879 aa17.58■□□□□ 0.41
VIPAS39-208ENST00000556412 RBM17Q96I25 401 aaKnown RBP17.58■□□□□ 0.41
VIPAS39-208ENST00000556412 GREM2Q9H772 168 aa17.58■□□□□ 0.41
VIPAS39-208ENST00000556412 PDZRN3Q9UPQ7 1066 aa17.58■□□□□ 0.41
VIPAS39-208ENST00000556412 TNRC6CQ9HCJ0 1690 aaKnown RBP17.58■□□□□ 0.4
VIPAS39-208ENST00000556412 SRCAPQ6ZRS2 3230 aa17.58■□□□□ 0.4
VIPAS39-208ENST00000556412 LRP5O75197 1615 aa17.57■□□□□ 0.4
VIPAS39-208ENST00000556412 ANKRD44Q8N8A2 993 aa17.57■□□□□ 0.4
VIPAS39-208ENST00000556412 SEC31BQ9NQW1 1179 aa17.57■□□□□ 0.4
VIPAS39-208ENST00000556412 STYK1Q6J9G0 422 aa17.56■□□□□ 0.4
VIPAS39-208ENST00000556412 EXOC6Q8TAG9 804 aa17.56■□□□□ 0.4
VIPAS39-208ENST00000556412 ZBTB40Q9NUA8 1239 aa17.56■□□□□ 0.4
VIPAS39-208ENST00000556412 CSF1RP07333 972 aa17.56■□□□□ 0.4
VIPAS39-208ENST00000556412 KCNA3P22001 575 aa17.56■□□□□ 0.4
VIPAS39-208ENST00000556412 ITGA6P23229 1130 aa17.56■□□□□ 0.4
VIPAS39-208ENST00000556412 CCDC57Q2TAC2 916 aa17.56■□□□□ 0.4
VIPAS39-208ENST00000556412 PELP1Q8IZL8 1130 aaKnown RBP17.56■□□□□ 0.4
VIPAS39-208ENST00000556412 PIM2Q9P1W9 311 aa17.56■□□□□ 0.4
VIPAS39-208ENST00000556412 ZNF219Q9P2Y4 722 aaPredicted RBP17.56■□□□□ 0.4
VIPAS39-208ENST00000556412 IFIT5Q13325 482 aaKnown RBP17.55■□□□□ 0.4
VIPAS39-208ENST00000556412 RABL6Q3YEC7 729 aaPredicted RBP17.55■□□□□ 0.4
VIPAS39-208ENST00000556412 TAF7LQ5H9L4 462 aa17.55■□□□□ 0.4
VIPAS39-208ENST00000556412 CNKSR1Q969H4 720 aa17.55■□□□□ 0.4
VIPAS39-208ENST00000556412 ANKRD18BA2A2Z9 1011 aa17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 ALDH1B1P30837 517 aa17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 HOXA10P31260 410 aaPredicted RBP17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 TTLL6Q8N841 843 aa17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 BCS1LQ9Y276 419 aa17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 N4BP2Q86UW6 1770 aaPredicted RBP17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 SRGAP3O43295 1099 aa17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 NEFLP07196 543 aa17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 GRAPQ13588 217 aa17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 PRPF40BQ6NWY9 871 aaKnown RBP17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 GRAPLQ8TC17 118 aaPredicted RBP17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 CELF1Q92879 486 aaKnown RBP17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 CRAMP1Q96RY5 1269 aa17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 CDC5LQ99459 802 aaKnown RBP17.54■□□□□ 0.4
VIPAS39-208ENST00000556412 DALRD3Q5D0E6 543 aaKnown RBP17.53■□□□□ 0.4
VIPAS39-208ENST00000556412 ANKRD18AQ8IVF6 992 aa17.53■□□□□ 0.4
VIPAS39-208ENST00000556412 DDX60Q8IY21 1712 aaKnown RBP17.53■□□□□ 0.4
VIPAS39-208ENST00000556412 PPEF1O14829 653 aaPredicted RBP17.52■□□□□ 0.4
VIPAS39-208ENST00000556412 ZNF594Q96JF6 807 aaPredicted RBP17.52■□□□□ 0.4
VIPAS39-208ENST00000556412 ANKRD31Q8N7Z5 1873 aa17.52■□□□□ 0.4
VIPAS39-208ENST00000556412 IGHMBP2P38935 993 aaKnown RBP17.51■□□□□ 0.39
VIPAS39-208ENST00000556412 RPS8P62241 208 aaKnown RBP17.51■□□□□ 0.39
VIPAS39-208ENST00000556412 CEP85Q6P2H3 762 aa17.51■□□□□ 0.39
VIPAS39-208ENST00000556412 KLHDC4Q8TBB5 520 aa17.51■□□□□ 0.39
VIPAS39-208ENST00000556412 RTL9Q8NET4 1388 aa17.51■□□□□ 0.39
VIPAS39-208ENST00000556412 PNMA6EA0A0J9YXQ4 647 aa17.51■□□□□ 0.39
VIPAS39-208ENST00000556412 MPHOSPH8Q99549 860 aa17.51■□□□□ 0.39
VIPAS39-208ENST00000556412 COL11A2P13942 1736 aaPredicted RBP17.49■□□□□ 0.39
VIPAS39-208ENST00000556412 LAMB2P55268 1798 aa17.49■□□□□ 0.39
VIPAS39-208ENST00000556412 C21orf2O43822 256 aa17.49■□□□□ 0.39
VIPAS39-208ENST00000556412 BBOX1O75936 387 aa17.49■□□□□ 0.39
VIPAS39-208ENST00000556412 ATP8B2P98198 1209 aa17.49■□□□□ 0.39
VIPAS39-208ENST00000556412 SLC51AQ86UW1 340 aa17.49■□□□□ 0.39
VIPAS39-208ENST00000556412 TMX4Q9H1E5 349 aaPredicted RBP17.49■□□□□ 0.39
VIPAS39-208ENST00000556412 MTX1Q13505 466 aa17.49■□□□□ 0.39
VIPAS39-208ENST00000556412 OLFM4Q6UX06 510 aa17.49■□□□□ 0.39
VIPAS39-208ENST00000556412 SIL1Q9H173 461 aa17.49■□□□□ 0.39
VIPAS39-208ENST00000556412 KIF13BQ9NQT8 1826 aa17.48■□□□□ 0.39
VIPAS39-208ENST00000556412 GPR162Q16538 588 aa17.48■□□□□ 0.39
VIPAS39-208ENST00000556412 LDHAL6AQ6ZMR3 332 aa17.48■□□□□ 0.39
VIPAS39-208ENST00000556412 RPAP2Q8IXW5 612 aaPredicted RBP17.48■□□□□ 0.39
VIPAS39-208ENST00000556412 CNNM1Q9NRU3 951 aa17.48■□□□□ 0.39
VIPAS39-208ENST00000556412 PA2G4Q9UQ80 394 aaKnown RBP17.48■□□□□ 0.39
VIPAS39-208ENST00000556412 RFX5P48382 616 aaPredicted RBP17.47■□□□□ 0.39
VIPAS39-208ENST00000556412 ATP6V0A2Q9Y487 856 aa17.47■□□□□ 0.39
VIPAS39-208ENST00000556412 PCDHB15Q9Y5E8 787 aa17.47■□□□□ 0.39
VIPAS39-208ENST00000556412 HMMRO75330 724 aa17.46■□□□□ 0.39
VIPAS39-208ENST00000556412 COL4A1P02462 1669 aa17.46■□□□□ 0.39
VIPAS39-208ENST00000556412 PTPN12Q05209 780 aaKnown RBP17.46■□□□□ 0.39
VIPAS39-208ENST00000556412 PUS3Q9BZE2 481 aaKnown RBP17.46■□□□□ 0.39
VIPAS39-208ENST00000556412 KIAA1551Q9HCM1 1747 aa17.46■□□□□ 0.39
VIPAS39-208ENST00000556412 BSDC1Q9NW68 430 aaPredicted RBP17.46■□□□□ 0.39
VIPAS39-208ENST00000556412 YBX3P16989 372 aaKnown RBP eCLIP17.45■□□□□ 0.38
VIPAS39-208ENST00000556412 POLA2Q14181 598 aa17.45■□□□□ 0.38
VIPAS39-208ENST00000556412 TMC4Q7Z404 712 aa17.45■□□□□ 0.38
VIPAS39-208ENST00000556412 SIRT2Q8IXJ6 389 aa17.45■□□□□ 0.38
VIPAS39-208ENST00000556412 SSH3Q8TE77 659 aa17.45■□□□□ 0.38
VIPAS39-208ENST00000556412 AAMPQ13685 434 aa17.44■□□□□ 0.38
VIPAS39-208ENST00000556412 LRRC24Q50LG9 513 aa17.44■□□□□ 0.38
VIPAS39-208ENST00000556412 SP8Q8IXZ3 490 aa17.44■□□□□ 0.38
VIPAS39-208ENST00000556412 SURF6O75683 361 aaKnown RBP17.44■□□□□ 0.38
VIPAS39-208ENST00000556412 OS9Q13438 667 aaPredicted RBP17.44■□□□□ 0.38
VIPAS39-208ENST00000556412 CCDC93Q567U6 631 aa17.44■□□□□ 0.38
VIPAS39-208ENST00000556412 C7orf43Q8WVR3 580 aa17.44■□□□□ 0.38
VIPAS39-208ENST00000556412 ANKIB1Q9P2G1 1089 aa17.44■□□□□ 0.38
VIPAS39-208ENST00000556412 NSFL1CQ9UNZ2 370 aaKnown RBP17.44■□□□□ 0.38
VIPAS39-208ENST00000556412 EYA2O00167 538 aa17.43■□□□□ 0.38
VIPAS39-208ENST00000556412 SOGA3Q5TF21 947 aa17.43■□□□□ 0.38
VIPAS39-208ENST00000556412 HELBQ8NG08 1087 aaPredicted RBP17.43■□□□□ 0.38
VIPAS39-208ENST00000556412 COPRSQ9NQ92 184 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms