RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 CTU1Q7Z7A3 348 aaKnown RBP12.88□□□□□ -0.35
SCFD1-215ENST00000555259 MICALL2Q8IY33 904 aa12.88□□□□□ -0.35
SCFD1-215ENST00000555259 ZNF34Q8IZ26 560 aa12.88□□□□□ -0.35
SCFD1-215ENST00000555259 NLRP3Q96P20 1036 aa12.88□□□□□ -0.35
SCFD1-215ENST00000555259 ZBTB3Q9H5J0 574 aa12.88□□□□□ -0.35
SCFD1-215ENST00000555259 GBA2Q9HCG7 927 aaPredicted RBP12.88□□□□□ -0.35
SCFD1-215ENST00000555259 ABCC4O15439 1325 aa12.88□□□□□ -0.35
SCFD1-215ENST00000555259 ZNF157P51786 506 aaPredicted RBP12.87□□□□□ -0.35
SCFD1-215ENST00000555259 KRT26Q7Z3Y9 468 aa12.87□□□□□ -0.35
SCFD1-215ENST00000555259 C2orf69Q8N8R5 385 aa12.87□□□□□ -0.35
SCFD1-215ENST00000555259 RRP7AQ9Y3A4 280 aaKnown RBP12.87□□□□□ -0.35
SCFD1-215ENST00000555259 YDJCA8MPS7 323 aa12.86□□□□□ -0.35
SCFD1-215ENST00000555259 TAF7Q15545 349 aaPredicted RBP12.86□□□□□ -0.35
SCFD1-215ENST00000555259 PPP1R42Q7Z4L9 355 aa12.86□□□□□ -0.35
SCFD1-215ENST00000555259 MPNDQ8N594 471 aa12.86□□□□□ -0.35
SCFD1-215ENST00000555259 MIS18AQ9NYP9 233 aa12.86□□□□□ -0.35
SCFD1-215ENST00000555259 HPS5Q9UPZ3 1129 aa12.86□□□□□ -0.35
SCFD1-215ENST00000555259 MYL6BP14649 208 aa12.86□□□□□ -0.35
SCFD1-215ENST00000555259 CNGB1Q14028 1251 aaPredicted RBP12.86□□□□□ -0.35
SCFD1-215ENST00000555259 SAMD7Q7Z3H4 446 aa12.86□□□□□ -0.35
SCFD1-215ENST00000555259 SP8Q8IXZ3 490 aa12.86□□□□□ -0.35
SCFD1-215ENST00000555259 CSRNP1Q96S65 589 aa12.86□□□□□ -0.35
SCFD1-215ENST00000555259 ZBTB12Q9Y330 459 aaPredicted RBP12.86□□□□□ -0.35
SCFD1-215ENST00000555259 CLSPNQ9HAW4 1339 aa12.85□□□□□ -0.35
SCFD1-215ENST00000555259 AKAP11Q9UKA4 1901 aa12.85□□□□□ -0.35
SCFD1-215ENST00000555259 ADM5C9JUS6 153 aa12.85□□□□□ -0.35
SCFD1-215ENST00000555259 HTATSF1O43719 755 aaKnown RBP12.85□□□□□ -0.35
SCFD1-215ENST00000555259 BBOX1O75936 387 aa12.85□□□□□ -0.35
SCFD1-215ENST00000555259 EGFRP00533 1210 aa12.85□□□□□ -0.35
SCFD1-215ENST00000555259 SLC10A3P09131 477 aa12.85□□□□□ -0.35
SCFD1-215ENST00000555259 PARP10Q53GL7 1025 aa12.85□□□□□ -0.35
SCFD1-215ENST00000555259 SLC10A5Q5PT55 438 aa12.85□□□□□ -0.35
SCFD1-215ENST00000555259 GIGYF2Q6Y7W6 1299 aaKnown RBP12.85□□□□□ -0.35
SCFD1-215ENST00000555259 DPF2Q92785 391 aa12.85□□□□□ -0.35
SCFD1-215ENST00000555259 TBC1D10BQ4KMP7 808 aaPredicted RBP12.84□□□□□ -0.35
SCFD1-215ENST00000555259 DUOX1Q9NRD9 1551 aa12.83□□□□□ -0.36
SCFD1-215ENST00000555259 DCPSQ96C86 337 aaKnown RBP12.83□□□□□ -0.36
SCFD1-215ENST00000555259 UTP14AQ9BVJ6 771 aaKnown RBP12.83□□□□□ -0.36
SCFD1-215ENST00000555259 BRCA2P51587 3418 aa12.83□□□□□ -0.36
SCFD1-215ENST00000555259 POLR2AP24928 1970 aaKnown RBP12.82□□□□□ -0.36
SCFD1-215ENST00000555259 CENPFP49454 3210 aa12.82□□□□□ -0.36
SCFD1-215ENST00000555259 PSMD14O00487 310 aa12.82□□□□□ -0.36
SCFD1-215ENST00000555259 U2AF1L5P0DN76 240 aaPredicted RBP12.82□□□□□ -0.36
SCFD1-215ENST00000555259 U2AF1Q01081 240 aaKnown RBP eCLIP12.82□□□□□ -0.368e-6■■□□□ 11.7
SCFD1-215ENST00000555259 PKN2Q16513 984 aaKnown RBP12.82□□□□□ -0.36
SCFD1-215ENST00000555259 GCC1Q96CN9 775 aa12.82□□□□□ -0.36
SCFD1-215ENST00000555259 CFAP53Q96M91 514 aa12.82□□□□□ -0.36
SCFD1-215ENST00000555259 NUDCQ9Y266 331 aa12.82□□□□□ -0.36
SCFD1-215ENST00000555259 EIF4A1P60842 406 aaKnown RBP12.81□□□□□ -0.36
SCFD1-215ENST00000555259 REM2Q8IYK8 340 aaPredicted RBP12.81□□□□□ -0.36
SCFD1-215ENST00000555259 HTTP42858 3142 aa12.81□□□□□ -0.36
SCFD1-215ENST00000555259 KDM3BQ7LBC6 1761 aa12.81□□□□□ -0.36
SCFD1-215ENST00000555259 GRAPQ13588 217 aa12.81□□□□□ -0.36
SCFD1-215ENST00000555259 RBM26Q5T8P6 1007 aaKnown RBP12.81□□□□□ -0.36
SCFD1-215ENST00000555259 DDX46Q7L014 1031 aaKnown RBP12.81□□□□□ -0.36
SCFD1-215ENST00000555259 RASAL3Q86YV0 1011 aa12.81□□□□□ -0.36
SCFD1-215ENST00000555259 GRAPLQ8TC17 118 aaPredicted RBP12.81□□□□□ -0.36
SCFD1-215ENST00000555259 PNISRQ8TF01 805 aaKnown RBP12.81□□□□□ -0.36
SCFD1-215ENST00000555259 DBNDD1Q9H9R9 158 aa12.81□□□□□ -0.36
SCFD1-215ENST00000555259 HCLS1P14317 486 aaPredicted RBP12.8□□□□□ -0.36
SCFD1-215ENST00000555259 RPS12P25398 132 aaKnown RBP12.8□□□□□ -0.36
SCFD1-215ENST00000555259 LAMB2P55268 1798 aa12.8□□□□□ -0.36
SCFD1-215ENST00000555259 SULF1Q8IWU6 871 aa12.8□□□□□ -0.36
SCFD1-215ENST00000555259 HDAC9Q9UKV0 1011 aa12.8□□□□□ -0.36
SCFD1-215ENST00000555259 ANKRD36CQ5JPF3 1778 aa12.79□□□□□ -0.36
SCFD1-215ENST00000555259 ERBB4Q15303 1308 aa12.79□□□□□ -0.36
SCFD1-215ENST00000555259 WASHC4Q2M389 1173 aa12.79□□□□□ -0.36
SCFD1-215ENST00000555259 LRP10Q7Z4F1 713 aa12.79□□□□□ -0.36
SCFD1-215ENST00000555259 ZNF296Q8WUU4 475 aaPredicted RBP12.79□□□□□ -0.36
SCFD1-215ENST00000555259 CDCA5Q96FF9 252 aa12.79□□□□□ -0.36
SCFD1-215ENST00000555259 GGA3Q9NZ52 723 aa12.79□□□□□ -0.36
SCFD1-215ENST00000555259 RTL9Q8NET4 1388 aa12.78□□□□□ -0.36
SCFD1-215ENST00000555259 ASTN2O75129 1339 aaPredicted RBP12.78□□□□□ -0.36
SCFD1-215ENST00000555259 KIF4BQ2VIQ3 1234 aa12.78□□□□□ -0.36
SCFD1-215ENST00000555259 HABP4Q5JVS0 413 aaKnown RBP12.78□□□□□ -0.36
SCFD1-215ENST00000555259 TMC4Q7Z404 712 aa12.78□□□□□ -0.36
SCFD1-215ENST00000555259 LRRC37AA6NMS7 1700 aa12.78□□□□□ -0.36
SCFD1-215ENST00000555259 TRIM26Q12899 539 aaPredicted RBP12.77□□□□□ -0.36
SCFD1-215ENST00000555259 THUMPD2Q9BTF0 503 aaKnown RBP12.77□□□□□ -0.36
SCFD1-215ENST00000555259 KCNQ5Q9NR82 932 aa12.77□□□□□ -0.36
SCFD1-215ENST00000555259 TAF1P21675 1872 aa12.77□□□□□ -0.37
SCFD1-215ENST00000555259 RIMBP2O15034 1052 aa12.77□□□□□ -0.37
SCFD1-215ENST00000555259 ECE2O60344 883 aa12.77□□□□□ -0.37
SCFD1-215ENST00000555259 TBC1D8O95759 1140 aa12.77□□□□□ -0.37
SCFD1-215ENST00000555259 NLRP10Q86W26 655 aa12.77□□□□□ -0.37
SCFD1-215ENST00000555259 NSFL1CQ9UNZ2 370 aaKnown RBP12.77□□□□□ -0.37
SCFD1-215ENST00000555259 FKBP1BP68106 108 aa12.76□□□□□ -0.37
SCFD1-215ENST00000555259 PDIA6Q15084 440 aa12.76□□□□□ -0.37
SCFD1-215ENST00000555259 FBXO46Q6PJ61 603 aaPredicted RBP12.76□□□□□ -0.37
SCFD1-215ENST00000555259 PCGF6Q9BYE7 350 aa12.76□□□□□ -0.37
SCFD1-215ENST00000555259 POLLQ9UGP5 575 aa12.76□□□□□ -0.37
SCFD1-215ENST00000555259 TRMT112Q9UI30 125 aaKnown RBP12.76□□□□□ -0.37
SCFD1-215ENST00000555259 PAPPA2Q9BXP8 1791 aa12.75□□□□□ -0.37
SCFD1-215ENST00000555259 SH3TC1Q8TE82 1336 aa12.75□□□□□ -0.37
SCFD1-215ENST00000555259 C6orf229H3BNL8 230 aa12.75□□□□□ -0.37
SCFD1-215ENST00000555259 DOK7Q18PE1 504 aa12.75□□□□□ -0.37
SCFD1-215ENST00000555259 PROSER3Q2NL68 480 aa12.75□□□□□ -0.37
SCFD1-215ENST00000555259 HSP90AB3PQ58FF7 597 aa12.75□□□□□ -0.37
SCFD1-215ENST00000555259 NOM1Q5C9Z4 860 aaKnown RBP12.75□□□□□ -0.37
SCFD1-215ENST00000555259 SZT2Q5T011 3432 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms