RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 EVI5LQ96CN4 794 aa14.58□□□□□ -0.07
SHMT2-207ENST00000553837 FMNL2Q96PY5 1086 aa14.58□□□□□ -0.07
SHMT2-207ENST00000553837 LARGE1O95461 756 aa14.58□□□□□ -0.08
SHMT2-207ENST00000553837 CDK11BP21127 795 aaKnown RBP14.58□□□□□ -0.08
SHMT2-207ENST00000553837 CABP4P57796 275 aa14.58□□□□□ -0.08
SHMT2-207ENST00000553837 NMIQ13287 307 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-207ENST00000553837 PRPF40BQ6NWY9 871 aaKnown RBP14.58□□□□□ -0.08
SHMT2-207ENST00000553837 BRINP3Q76B58 766 aa14.58□□□□□ -0.08
SHMT2-207ENST00000553837 DDX54Q8TDD1 881 aaKnown RBP14.58□□□□□ -0.08
SHMT2-207ENST00000553837 GPATCH3Q96I76 525 aa14.58□□□□□ -0.08
SHMT2-207ENST00000553837 BOLA2Q9H3K6 86 aa14.58□□□□□ -0.08
SHMT2-207ENST00000553837 RPAP1Q9BWH6 1393 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-207ENST00000553837 NBPF26B4DH59 902 aa14.57□□□□□ -0.08
SHMT2-207ENST00000553837 ADCY5O95622 1261 aa14.57□□□□□ -0.08
SHMT2-207ENST00000553837 FOXD4L6Q3SYB3 417 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-207ENST00000553837 NBPF14Q5TI25 921 aa14.57□□□□□ -0.08
SHMT2-207ENST00000553837 NBPF10Q6P3W6 841 aaKnown RBP14.57□□□□□ -0.08
SHMT2-207ENST00000553837 FOXD4L3Q6VB84 417 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-207ENST00000553837 NBPF15Q8N660 670 aa14.57□□□□□ -0.08
SHMT2-207ENST00000553837 KCNB2Q92953 911 aa14.57□□□□□ -0.08
SHMT2-207ENST00000553837 FEZ1Q99689 392 aa14.57□□□□□ -0.08
SHMT2-207ENST00000553837 ARFGEF2Q9Y6D5 1785 aa14.57□□□□□ -0.08
SHMT2-207ENST00000553837 CASTP20810 708 aaKnown RBP14.57□□□□□ -0.08
SHMT2-207ENST00000553837 NECTIN1Q15223 517 aa14.57□□□□□ -0.08
SHMT2-207ENST00000553837 UBE3BQ7Z3V4 1068 aa14.57□□□□□ -0.08
SHMT2-207ENST00000553837 EDC3Q96F86 508 aaKnown RBP14.57□□□□□ -0.08
SHMT2-207ENST00000553837 TTC12Q9H892 705 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-207ENST00000553837 AFDNP55196 1824 aaKnown RBP14.56□□□□□ -0.08
SHMT2-207ENST00000553837 A0A0D9SFI3 127 aa14.56□□□□□ -0.08
SHMT2-207ENST00000553837 TPM3P06753 285 aa14.56□□□□□ -0.08
SHMT2-207ENST00000553837 CHRM1P11229 460 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-207ENST00000553837 PTPN12Q05209 780 aaKnown RBP14.56□□□□□ -0.08
SHMT2-207ENST00000553837 RUFY2Q8WXA3 655 aa14.56□□□□□ -0.08
SHMT2-207ENST00000553837 USP25Q9UHP3 1055 aa14.56□□□□□ -0.08
SHMT2-207ENST00000553837 CASP7P55210 303 aa14.56□□□□□ -0.08
SHMT2-207ENST00000553837 SLC20A2Q08357 652 aa14.56□□□□□ -0.08
SHMT2-207ENST00000553837 ANKRD7Q92527 254 aa14.56□□□□□ -0.08
SHMT2-207ENST00000553837 COPRSQ9NQ92 184 aa14.56□□□□□ -0.08
SHMT2-207ENST00000553837 CCDC171Q6TFL3 1326 aa14.55□□□□□ -0.08
SHMT2-207ENST00000553837 SPDYE4A6NLX3 237 aa14.55□□□□□ -0.08
SHMT2-207ENST00000553837 JAKMIP1Q96N16 626 aaKnown RBP14.55□□□□□ -0.08
SHMT2-207ENST00000553837 GDPD2Q9HCC8 539 aa14.55□□□□□ -0.08
SHMT2-207ENST00000553837 LIMCH1Q9UPQ0 1083 aa14.55□□□□□ -0.08
SHMT2-207ENST00000553837 TAF6LQ9Y6J9 622 aa14.55□□□□□ -0.08
SHMT2-207ENST00000553837 NDUFB9Q9Y6M9 179 aa14.55□□□□□ -0.08
SHMT2-207ENST00000553837 CHGBP05060 677 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 BRD2P25440 801 aaKnown RBP14.54□□□□□ -0.08
SHMT2-207ENST00000553837 ST3GAL1Q11201 340 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 TFCP2Q12800 502 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 RABL6Q3YEC7 729 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-207ENST00000553837 MPNDQ8N594 471 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 DBNLQ9UJU6 430 aaKnown RBP14.54□□□□□ -0.08
SHMT2-207ENST00000553837 RBM8AQ9Y5S9 174 aaKnown RBP14.54□□□□□ -0.08
SHMT2-207ENST00000553837 PLEKHG2Q9H7P9 1386 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 A0A087WZG4 1122 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 FAM177BA6PVY3 158 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 GADD45BO75293 160 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-207ENST00000553837 TTLL7Q6ZT98 887 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 C17orf53Q8N3J3 647 aaPredicted RBP14.54□□□□□ -0.08
SHMT2-207ENST00000553837 MAP4K1Q92918 833 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 ZSWIM6Q9HCJ5 1215 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 SNRKQ9NRH2 765 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 PARP4Q9UKK3 1724 aaKnown RBP14.54□□□□□ -0.08
SHMT2-207ENST00000553837 LAMB4A4D0S4 1761 aa14.54□□□□□ -0.08
SHMT2-207ENST00000553837 KDM4AO75164 1064 aa14.53□□□□□ -0.08
SHMT2-207ENST00000553837 CCDC183Q5T5S1 534 aa14.53□□□□□ -0.08
SHMT2-207ENST00000553837 CREB3L3Q68CJ9 461 aa14.53□□□□□ -0.08
SHMT2-207ENST00000553837 ZNF589Q86UQ0 364 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-207ENST00000553837 OGFRQ9NZT2 677 aa14.53□□□□□ -0.08
SHMT2-207ENST00000553837 WDR17Q8IZU2 1322 aa14.53□□□□□ -0.08
SHMT2-207ENST00000553837 CTIFO43310 598 aaKnown RBP14.53□□□□□ -0.08
SHMT2-207ENST00000553837 USP48Q86UV5 1035 aa14.53□□□□□ -0.08
SHMT2-207ENST00000553837 PLBD2Q8NHP8 589 aa14.53□□□□□ -0.08
SHMT2-207ENST00000553837 KIAA1524Q8TCG1 905 aa14.53□□□□□ -0.08
SHMT2-207ENST00000553837 FSD1Q9BTV5 496 aa14.53□□□□□ -0.08
SHMT2-207ENST00000553837 PRDM11Q9NQV5 511 aa14.53□□□□□ -0.08
SHMT2-207ENST00000553837 RIOK3O14730 519 aaKnown RBP14.52□□□□□ -0.08
SHMT2-207ENST00000553837 TNNI3KQ59H18 835 aa14.52□□□□□ -0.08
SHMT2-207ENST00000553837 TOM1L2Q6ZVM7 507 aa14.52□□□□□ -0.08
SHMT2-207ENST00000553837 ZCRB1Q8TBF4 217 aaKnown RBP14.52□□□□□ -0.08
SHMT2-207ENST00000553837 PDRG1Q9NUG6 133 aa14.52□□□□□ -0.08
SHMT2-207ENST00000553837 FPGT-TNNI3KV9GXZ4 949 aa14.52□□□□□ -0.08
SHMT2-207ENST00000553837 COL15A1P39059 1388 aa14.52□□□□□ -0.09
SHMT2-207ENST00000553837 MED23Q9ULK4 1368 aa14.52□□□□□ -0.09
SHMT2-207ENST00000553837 TCHHQ07283 1943 aa14.52□□□□□ -0.09
SHMT2-207ENST00000553837 SLC27A2O14975 620 aa14.51□□□□□ -0.09
SHMT2-207ENST00000553837 A1BGP04217 495 aa14.51□□□□□ -0.09
SHMT2-207ENST00000553837 U2AF2P26368 475 aaKnown RBP eCLIP14.51□□□□□ -0.094e-8■■□□□ 14.1
SHMT2-207ENST00000553837 FOXO4P98177 505 aa14.51□□□□□ -0.09
SHMT2-207ENST00000553837 VPS53Q5VIR6 699 aa14.51□□□□□ -0.09
SHMT2-207ENST00000553837 TM6SF1Q9BZW5 370 aa14.51□□□□□ -0.09
SHMT2-207ENST00000553837 WDR33Q9C0J8 1336 aaKnown RBP14.51□□□□□ -0.09
SHMT2-207ENST00000553837 COL5A2P05997 1499 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-207ENST00000553837 KCPQ6ZWJ8 1503 aa14.51□□□□□ -0.09
SHMT2-207ENST00000553837 SYT1P21579 422 aa14.51□□□□□ -0.09
SHMT2-207ENST00000553837 CCDC83Q8IWF9 413 aa14.51□□□□□ -0.09
SHMT2-207ENST00000553837 DBNDD2Q9BQY9 259 aa14.51□□□□□ -0.09
SHMT2-207ENST00000553837 ME3Q16798 604 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 LMBR1LQ6UX01 489 aa14.5□□□□□ -0.09
SHMT2-207ENST00000553837 ZNF771Q7L3S4 317 aaPredicted RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms