RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 ZNF516Q92618 1163 aa10.08□□□□□ -0.8
ATXN3-219ENST00000553488 MRC1P22897 1456 aa10.08□□□□□ -0.8
ATXN3-219ENST00000553488 ANKRD31Q8N7Z5 1873 aa10.08□□□□□ -0.8
ATXN3-219ENST00000553488 RFC4P35249 363 aa10.07□□□□□ -0.8
ATXN3-219ENST00000553488 FSTL1Q12841 308 aa10.07□□□□□ -0.8
ATXN3-219ENST00000553488 SRP68Q9UHB9 627 aaKnown RBP10.07□□□□□ -0.8
ATXN3-219ENST00000553488 PARP3Q9Y6F1 533 aa10.07□□□□□ -0.8
ATXN3-219ENST00000553488 COL11A2P13942 1736 aaPredicted RBP10.07□□□□□ -0.8
ATXN3-219ENST00000553488 CRKLP46109 303 aaKnown RBP10.06□□□□□ -0.8
ATXN3-219ENST00000553488 KMT5BQ4FZB7 885 aa10.06□□□□□ -0.8
ATXN3-219ENST00000553488 PIM2Q9P1W9 311 aa10.06□□□□□ -0.8
ATXN3-219ENST00000553488 FER1L6Q2WGJ9 1857 aa10.06□□□□□ -0.8
ATXN3-219ENST00000553488 KDM2BQ8NHM5 1336 aa10.06□□□□□ -0.8
ATXN3-219ENST00000553488 SCN7AQ01118 1682 aa10.06□□□□□ -0.8
ATXN3-219ENST00000553488 POLRMTO00411 1230 aaKnown RBP10.05□□□□□ -0.8
ATXN3-219ENST00000553488 HSP90AB1P08238 724 aaKnown RBP10.05□□□□□ -0.8
ATXN3-219ENST00000553488 CD46P15529 392 aa10.05□□□□□ -0.8
ATXN3-219ENST00000553488 GCGRP47871 477 aa10.05□□□□□ -0.8
ATXN3-219ENST00000553488 DALRD3Q5D0E6 543 aaKnown RBP10.05□□□□□ -0.8
ATXN3-219ENST00000553488 ZNF530Q6P9A1 599 aaPredicted RBP10.05□□□□□ -0.8
ATXN3-219ENST00000553488 SULF1Q8IWU6 871 aa10.05□□□□□ -0.8
ATXN3-219ENST00000553488 REPIN1Q9BWE0 567 aaKnown RBP10.05□□□□□ -0.8
ATXN3-219ENST00000553488 RNF181Q9P0P0 153 aa10.05□□□□□ -0.8
ATXN3-219ENST00000553488 PCDHB3Q9Y5E6 796 aa10.05□□□□□ -0.8
ATXN3-219ENST00000553488 ZC3H4Q9UPT8 1303 aaKnown RBP10.05□□□□□ -0.8
ATXN3-219ENST00000553488 DDX11L8A8MPP1 907 aa10.04□□□□□ -0.8
ATXN3-219ENST00000553488 CHRNA5P30532 468 aa10.04□□□□□ -0.8
ATXN3-219ENST00000553488 PRELPP51888 382 aa10.04□□□□□ -0.8
ATXN3-219ENST00000553488 MDM2Q00987 491 aaPredicted RBP10.04□□□□□ -0.8
ATXN3-219ENST00000553488 AMHR2Q16671 573 aa10.04□□□□□ -0.8
ATXN3-219ENST00000553488 BLOC1S3Q6QNY0 202 aa10.04□□□□□ -0.8
ATXN3-219ENST00000553488 AEBP1Q8IUX7 1158 aa10.04□□□□□ -0.8
ATXN3-219ENST00000553488 C16orf71Q8IYS4 520 aaPredicted RBP10.04□□□□□ -0.8
ATXN3-219ENST00000553488 CACNA1SQ13698 1873 aa10.04□□□□□ -0.8
ATXN3-219ENST00000553488 ARFGEF2Q9Y6D5 1785 aa10.03□□□□□ -0.8
ATXN3-219ENST00000553488 PTCD1O75127 700 aaKnown RBP10.03□□□□□ -0.8
ATXN3-219ENST00000553488 ZPR1O75312 459 aa10.03□□□□□ -0.8
ATXN3-219ENST00000553488 TM4SF1P30408 202 aa10.03□□□□□ -0.8
ATXN3-219ENST00000553488 CABP4P57796 275 aa10.03□□□□□ -0.8
ATXN3-219ENST00000553488 COPS2P61201 443 aa10.03□□□□□ -0.8
ATXN3-219ENST00000553488 RASSF7Q02833 373 aa10.03□□□□□ -0.8
ATXN3-219ENST00000553488 PLEKHO1Q53GL0 409 aaPredicted RBP10.03□□□□□ -0.8
ATXN3-219ENST00000553488 INTS5Q6P9B9 1019 aaKnown RBP10.03□□□□□ -0.8
ATXN3-219ENST00000553488 RRAGCQ9HB90 399 aa10.03□□□□□ -0.8
ATXN3-219ENST00000553488 SOS1Q07889 1333 aaPredicted RBP10.03□□□□□ -0.8
ATXN3-219ENST00000553488 SIPA1L3O60292 1781 aaPredicted RBP10.02□□□□□ -0.81
ATXN3-219ENST00000553488 TNNT2P45379 298 aaPredicted RBP10.02□□□□□ -0.81
ATXN3-219ENST00000553488 AMOTQ4VCS5 1084 aa10.02□□□□□ -0.81
ATXN3-219ENST00000553488 KRI1Q8N9T8 703 aaKnown RBP10.02□□□□□ -0.81
ATXN3-219ENST00000553488 SMC1BQ8NDV3 1235 aa10.02□□□□□ -0.81
ATXN3-219ENST00000553488 GPCPD1Q9NPB8 672 aa10.02□□□□□ -0.81
ATXN3-219ENST00000553488 FAM217BQ9NTX9 383 aaPredicted RBP10.02□□□□□ -0.81
ATXN3-219ENST00000553488 COL15A1P39059 1388 aa10.01□□□□□ -0.81
ATXN3-219ENST00000553488 CARMIL3Q8ND23 1372 aa10.01□□□□□ -0.81
ATXN3-219ENST00000553488 RGS20O76081 388 aa10.01□□□□□ -0.81
ATXN3-219ENST00000553488 CLCN1P35523 988 aa10.01□□□□□ -0.81
ATXN3-219ENST00000553488 RDH13Q8NBN7 331 aa10.01□□□□□ -0.81
ATXN3-219ENST00000553488 NFATC2IPQ8NCF5 419 aa10.01□□□□□ -0.81
ATXN3-219ENST00000553488 NKX2-3Q8TAU0 364 aa10.01□□□□□ -0.81
ATXN3-219ENST00000553488 BCORQ6W2J9 1755 aa10.01□□□□□ -0.81
ATXN3-219ENST00000553488 MTHFSP49914 203 aa10□□□□□ -0.81
ATXN3-219ENST00000553488 USPL1Q5W0Q7 1092 aa10□□□□□ -0.81
ATXN3-219ENST00000553488 DNAJC10Q8IXB1 793 aa10□□□□□ -0.81
ATXN3-219ENST00000553488 TNS4Q8IZW8 715 aa10□□□□□ -0.81
ATXN3-219ENST00000553488 GLTPD2A6NH11 291 aa9.99□□□□□ -0.81
ATXN3-219ENST00000553488 NFKBIEO00221 500 aa9.99□□□□□ -0.81
ATXN3-219ENST00000553488 TRIM66O15016 1216 aa9.99□□□□□ -0.81
ATXN3-219ENST00000553488 HSPA1AP0DMV8 641 aaKnown RBP9.99□□□□□ -0.81
ATXN3-219ENST00000553488 HSPA1BP0DMV9 641 aaKnown RBP9.99□□□□□ -0.81
ATXN3-219ENST00000553488 LMNB1P20700 586 aa9.99□□□□□ -0.81
ATXN3-219ENST00000553488 FUT2Q10981 343 aa9.99□□□□□ -0.81
ATXN3-219ENST00000553488 NFIXQ14938 502 aa9.99□□□□□ -0.81
ATXN3-219ENST00000553488 C1orf141Q5JVX7 400 aa9.99□□□□□ -0.81
ATXN3-219ENST00000553488 SLX4Q8IY92 1834 aa9.98□□□□□ -0.81
ATXN3-219ENST00000553488 POTECB2RU33 542 aa9.98□□□□□ -0.81
ATXN3-219ENST00000553488 CYP19A1P11511 503 aaPredicted RBP9.98□□□□□ -0.81
ATXN3-219ENST00000553488 MORN1Q5T089 497 aa9.98□□□□□ -0.81
ATXN3-219ENST00000553488 SLC52A2Q9HAB3 445 aa9.98□□□□□ -0.81
ATXN3-219ENST00000553488 NARFQ9UHQ1 456 aa9.98□□□□□ -0.81
ATXN3-219ENST00000553488 ZBTB1Q9Y2K1 713 aa9.98□□□□□ -0.81
ATXN3-219ENST00000553488 VEGFAP15692 232 aaPredicted RBP9.97□□□□□ -0.81
ATXN3-219ENST00000553488 IL13P35225 146 aa9.97□□□□□ -0.81
ATXN3-219ENST00000553488 SULT6B1Q6IMI4 303 aa9.97□□□□□ -0.81
ATXN3-219ENST00000553488 SCUBE3Q8IX30 993 aa9.97□□□□□ -0.81
ATXN3-219ENST00000553488 SCN4AP35499 1836 aa9.97□□□□□ -0.81
ATXN3-219ENST00000553488 ADAMTSL1Q8N6G6 1762 aa9.96□□□□□ -0.81
ATXN3-219ENST00000553488 SERPINB2P05120 415 aa9.96□□□□□ -0.82
ATXN3-219ENST00000553488 PUS10Q3MIT2 529 aaKnown RBP9.96□□□□□ -0.82
ATXN3-219ENST00000553488 AKAP4Q5JQC9 854 aa9.96□□□□□ -0.82
ATXN3-219ENST00000553488 PPP1R18Q6NYC8 613 aa9.96□□□□□ -0.82
ATXN3-219ENST00000553488 NR1I2O75469 434 aa9.95□□□□□ -0.82
ATXN3-219ENST00000553488 SLC39A6Q13433 755 aa9.95□□□□□ -0.82
ATXN3-219ENST00000553488 TTLL6Q8N841 843 aa9.95□□□□□ -0.82
ATXN3-219ENST00000553488 THAP11Q96EK4 314 aa9.95□□□□□ -0.82
ATXN3-219ENST00000553488 PANK3Q9H999 370 aa9.95□□□□□ -0.82
ATXN3-219ENST00000553488 LGR6Q9HBX8 967 aa9.95□□□□□ -0.82
ATXN3-219ENST00000553488 RNMTO43148 476 aaKnown RBP9.94□□□□□ -0.82
ATXN3-219ENST00000553488 TLL1O43897 1013 aa9.94□□□□□ -0.82
ATXN3-219ENST00000553488 C2CD5Q86YS7 1000 aa9.94□□□□□ -0.82
ATXN3-219ENST00000553488 POLR3GLQ9BT43 218 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms