RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 EIF2AK2P19525 551 aaKnown RBP4.12□□□□□ -1.75
LIMA1-207ENST00000551486 JAG1P78504 1218 aa4.12□□□□□ -1.75
LIMA1-207ENST00000551486 GPLD1P80108 840 aa4.12□□□□□ -1.75
LIMA1-207ENST00000551486 NFIAQ12857 509 aa4.12□□□□□ -1.75
LIMA1-207ENST00000551486 CCDC102BQ68D86 513 aa4.12□□□□□ -1.75
LIMA1-207ENST00000551486 TPCN2Q8NHX9 752 aa4.12□□□□□ -1.75
LIMA1-207ENST00000551486 C11orf16Q9NQ32 467 aa4.12□□□□□ -1.75
LIMA1-207ENST00000551486 TGFBR3LH3BV60 316 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 M0R2N6 131 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 RARAP10276 462 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 SPINK2P20155 84 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 MLLT1Q03111 559 aaPredicted RBP4.11□□□□□ -1.75
LIMA1-207ENST00000551486 POTEAQ6S8J7 498 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 KRT25Q7Z3Z0 450 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 DTX1Q86Y01 620 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 ZDHHC13Q8IUH4 622 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 WWC1Q8IX03 1113 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 CACTIN-AS1Q8N1I8 211 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 STAG2Q8N3U4 1231 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 IL22RA1Q8N6P7 574 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 GAS2L2Q8NHY3 880 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 ASIC4Q96FT7 647 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 NGLY1Q96IV0 654 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 DBNDD2Q9BQY9 259 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 MUC3BQ9H195 1237 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 GDPD2Q9HCC8 539 aa4.11□□□□□ -1.75
LIMA1-207ENST00000551486 PIK3CDO00329 1044 aa4.1□□□□□ -1.75
LIMA1-207ENST00000551486 GHRHP01286 108 aa4.1□□□□□ -1.75
LIMA1-207ENST00000551486 UVSSAQ2YD98 709 aa4.1□□□□□ -1.75
LIMA1-207ENST00000551486 RNF43Q68DV7 783 aa4.1□□□□□ -1.75
LIMA1-207ENST00000551486 GDF6Q6KF10 455 aaPredicted RBP4.1□□□□□ -1.75
LIMA1-207ENST00000551486 Q6ZS46 218 aa4.1□□□□□ -1.75
LIMA1-207ENST00000551486 GIMAP7Q8NHV1 300 aa4.1□□□□□ -1.75
LIMA1-207ENST00000551486 UTP4Q969X6 686 aaKnown RBP4.1□□□□□ -1.75
LIMA1-207ENST00000551486 ADGRE2Q9UHX3 823 aa4.1□□□□□ -1.75
LIMA1-207ENST00000551486 ANGEL1Q9UNK9 670 aaKnown RBP4.1□□□□□ -1.75
LIMA1-207ENST00000551486 USP17L5A8MUK1 530 aa4.09□□□□□ -1.75
LIMA1-207ENST00000551486 ZBTB42B2RXF5 422 aa4.09□□□□□ -1.75
LIMA1-207ENST00000551486 NRLP54845 237 aa4.09□□□□□ -1.75
LIMA1-207ENST00000551486 RTN1Q16799 776 aa4.09□□□□□ -1.75
LIMA1-207ENST00000551486 OGFOD2Q6N063 350 aa4.09□□□□□ -1.75
LIMA1-207ENST00000551486 HFE2Q6ZVN8 426 aa4.09□□□□□ -1.75
LIMA1-207ENST00000551486 AGGF1Q8N302 714 aaeCLIP4.09□□□□□ -1.75
LIMA1-207ENST00000551486 CHMP7Q8WUX9 453 aaPredicted RBP4.09□□□□□ -1.75
LIMA1-207ENST00000551486 PLD4Q96BZ4 506 aa4.09□□□□□ -1.75
LIMA1-207ENST00000551486 ATAD2Q6PL18 1390 aa4.09□□□□□ -1.75
LIMA1-207ENST00000551486 PALM3A6NDB9 673 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-207ENST00000551486 ADAMTS4O75173 837 aa4.08□□□□□ -1.76
LIMA1-207ENST00000551486 SASH3O75995 380 aa4.08□□□□□ -1.76
LIMA1-207ENST00000551486 PSAPP07602 524 aa4.08□□□□□ -1.76
LIMA1-207ENST00000551486 TARSP26639 723 aaKnown RBP4.08□□□□□ -1.76
LIMA1-207ENST00000551486 PLAURQ03405 335 aa4.08□□□□□ -1.76
LIMA1-207ENST00000551486 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.08□□□□□ -1.76
LIMA1-207ENST00000551486 TRIM42Q8IWZ5 723 aa4.08□□□□□ -1.76
LIMA1-207ENST00000551486 DEPDC4Q8N2C3 294 aa4.08□□□□□ -1.76
LIMA1-207ENST00000551486 LARGE2Q8N3Y3 721 aa4.08□□□□□ -1.76
LIMA1-207ENST00000551486 POU5F2Q8N7G0 328 aa4.08□□□□□ -1.76
LIMA1-207ENST00000551486 UBL7Q96S82 380 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-207ENST00000551486 C2orf49Q9BVC5 232 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-207ENST00000551486 C7orf69Q9H7B7 122 aa4.08□□□□□ -1.76
LIMA1-207ENST00000551486 LOC102724428A0A0B4J2F2 783 aa4.07□□□□□ -1.76
LIMA1-207ENST00000551486 ZBTB7BO15156 539 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-207ENST00000551486 SART1O43290 800 aaKnown RBP4.07□□□□□ -1.76
LIMA1-207ENST00000551486 C8AP07357 584 aa4.07□□□□□ -1.76
LIMA1-207ENST00000551486 IDH3AP50213 366 aa4.07□□□□□ -1.76
LIMA1-207ENST00000551486 ARSDP51689 593 aa4.07□□□□□ -1.76
LIMA1-207ENST00000551486 SIK1P57059 783 aa4.07□□□□□ -1.76
LIMA1-207ENST00000551486 CLEC10AQ8IUN9 316 aa4.07□□□□□ -1.76
LIMA1-207ENST00000551486 SCG3Q8WXD2 468 aaKnown RBP4.07□□□□□ -1.76
LIMA1-207ENST00000551486 IFT43Q96FT9 208 aa4.07□□□□□ -1.76
LIMA1-207ENST00000551486 TLR7Q9NYK1 1049 aaKnown RBP4.07□□□□□ -1.76
LIMA1-207ENST00000551486 ZFATQ9P243 1243 aa4.07□□□□□ -1.76
LIMA1-207ENST00000551486 PPME1Q9Y570 386 aa4.07□□□□□ -1.76
LIMA1-207ENST00000551486 HMX2A2RU54 273 aa4.06□□□□□ -1.76
LIMA1-207ENST00000551486 PRR19A6NJB7 356 aa4.06□□□□□ -1.76
LIMA1-207ENST00000551486 INPP5BP32019 993 aa4.06□□□□□ -1.76
LIMA1-207ENST00000551486 SETDB1Q15047 1291 aa4.06□□□□□ -1.76
LIMA1-207ENST00000551486 ACAD11Q709F0 780 aa4.06□□□□□ -1.76
LIMA1-207ENST00000551486 ARMC10Q8N2F6 343 aa4.06□□□□□ -1.76
LIMA1-207ENST00000551486 TSEN2Q8NCE0 465 aaKnown RBP4.06□□□□□ -1.76
LIMA1-207ENST00000551486 SHKBP1Q8TBC3 707 aa4.06□□□□□ -1.76
LIMA1-207ENST00000551486 KCNF1Q9H3M0 494 aa4.06□□□□□ -1.76
LIMA1-207ENST00000551486 ATG3Q9NT62 314 aa4.06□□□□□ -1.76
LIMA1-207ENST00000551486 FAM177BA6PVY3 158 aa4.05□□□□□ -1.76
LIMA1-207ENST00000551486 JUNBP17275 347 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-207ENST00000551486 CD68P34810 354 aaPredicted RBP4.05□□□□□ -1.76
LIMA1-207ENST00000551486 FAM117BQ6P1L5 589 aa4.05□□□□□ -1.76
LIMA1-207ENST00000551486 PLEKHM2Q8IWE5 1019 aa4.05□□□□□ -1.76
LIMA1-207ENST00000551486 ABI1Q8IZP0 508 aa4.05□□□□□ -1.76
LIMA1-207ENST00000551486 OGFOD1Q8N543 542 aa4.05□□□□□ -1.76
LIMA1-207ENST00000551486 MYRFLQ96LU7 910 aa4.05□□□□□ -1.76
LIMA1-207ENST00000551486 FBXL18Q96ME1 805 aa4.05□□□□□ -1.76
LIMA1-207ENST00000551486 FAM83CQ9BQN1 747 aa4.05□□□□□ -1.76
LIMA1-207ENST00000551486 ALG2Q9H553 416 aa4.05□□□□□ -1.76
LIMA1-207ENST00000551486 DMGDHQ9UI17 866 aaKnown RBP4.05□□□□□ -1.76
LIMA1-207ENST00000551486 WDR64B1ANS9 1081 aa4.04□□□□□ -1.76
LIMA1-207ENST00000551486 J3QW42 95 aa4.04□□□□□ -1.76
LIMA1-207ENST00000551486 C21orf2O43822 256 aa4.04□□□□□ -1.76
LIMA1-207ENST00000551486 CLDN10P78369 228 aa4.04□□□□□ -1.76
LIMA1-207ENST00000551486 DUOXA2Q1HG44 320 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms