RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 LRSAM1Q6UWE0 723 aa19■□□□□ 0.63
CUX1-213ENST00000549414 SIRT2Q8IXJ6 389 aa19■□□□□ 0.63
CUX1-213ENST00000549414 HOXB7P09629 217 aa19■□□□□ 0.63
CUX1-213ENST00000549414 METTL22Q9BUU2 404 aaPredicted RBP19■□□□□ 0.63
CUX1-213ENST00000549414 BABAM1Q9NWV8 329 aa19■□□□□ 0.63
CUX1-213ENST00000549414 SYT1P21579 422 aa18.99■□□□□ 0.63
CUX1-213ENST00000549414 NCOA7Q8NI08 942 aa18.99■□□□□ 0.63
CUX1-213ENST00000549414 BTG4Q9NY30 223 aa18.99■□□□□ 0.63
CUX1-213ENST00000549414 GIGYF1O75420 1035 aaPredicted RBP18.99■□□□□ 0.63
CUX1-213ENST00000549414 USP5P45974 858 aa18.99■□□□□ 0.63
CUX1-213ENST00000549414 FAM173BQ6P4H8 233 aa18.99■□□□□ 0.63
CUX1-213ENST00000549414 CCDC43Q96MW1 224 aaKnown RBP18.99■□□□□ 0.63
CUX1-213ENST00000549414 ZNF830Q96NB3 372 aaPredicted RBP18.99■□□□□ 0.63
CUX1-213ENST00000549414 SGSM2O43147 1006 aa18.99■□□□□ 0.63
CUX1-213ENST00000549414 NOL7Q9UMY1 257 aaKnown RBP18.99■□□□□ 0.63
CUX1-213ENST00000549414 DZIP1Q86YF9 867 aaKnown RBP18.98■□□□□ 0.63
CUX1-213ENST00000549414 ZNF853P0CG23 659 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 PROSER3Q2NL68 480 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 CFAP100Q494V2 611 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 GOLGA6L1Q8N7Z2 621 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 RNF17Q9BXT8 1623 aaKnown RBP18.98■□□□□ 0.63
CUX1-213ENST00000549414 DCAF8L1A6NGE4 600 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 ZNF165P49910 485 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 APOBRQ0VD83 1088 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 KLHL10Q6JEL2 608 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 MCM5P33992 734 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 IARSP41252 1262 aaKnown RBP18.98■□□□□ 0.63
CUX1-213ENST00000549414 NAP1L1P55209 391 aaKnown RBP18.98■□□□□ 0.63
CUX1-213ENST00000549414 FILIP1LQ4L180 1135 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 CDK5RAP3Q96JB5 506 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 PALD1Q9ULE6 856 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 SNX14Q9Y5W7 946 aa18.98■□□□□ 0.63
CUX1-213ENST00000549414 GCKRQ14397 625 aa18.97■□□□□ 0.63
CUX1-213ENST00000549414 WASF1Q92558 559 aa18.97■□□□□ 0.63
CUX1-213ENST00000549414 CHAMP1Q96JM3 812 aa18.97■□□□□ 0.63
CUX1-213ENST00000549414 MKNK2Q9HBH9 465 aa18.97■□□□□ 0.63
CUX1-213ENST00000549414 DACT1Q9NYF0 836 aa18.97■□□□□ 0.63
CUX1-213ENST00000549414 METAP2P50579 478 aaKnown RBP eCLIP18.97■□□□□ 0.63
CUX1-213ENST00000549414 DZIP3Q86Y13 1208 aaKnown RBP18.97■□□□□ 0.63
CUX1-213ENST00000549414 CCAR1Q8IX12 1150 aaKnown RBP18.97■□□□□ 0.63
CUX1-213ENST00000549414 ATP7BP35670 1465 aa18.97■□□□□ 0.63
CUX1-213ENST00000549414 DDX19AQ9NUU7 478 aaKnown RBP18.97■□□□□ 0.63
CUX1-213ENST00000549414 NIP7Q9Y221 180 aaKnown RBP eCLIP18.97■□□□□ 0.63
CUX1-213ENST00000549414 USP6P35125 1406 aa18.97■□□□□ 0.63
CUX1-213ENST00000549414 PRAMEF22A3QJZ6 481 aa18.96■□□□□ 0.63
CUX1-213ENST00000549414 SLC26A6Q9BXS9 759 aa18.96■□□□□ 0.63
CUX1-213ENST00000549414 TTF1Q15361 905 aaPredicted RBP18.96■□□□□ 0.63
CUX1-213ENST00000549414 DDB1Q16531 1140 aa18.96■□□□□ 0.63
CUX1-213ENST00000549414 IRS4O14654 1257 aaPredicted RBP18.96■□□□□ 0.63
CUX1-213ENST00000549414 TNNI3KQ59H18 835 aa18.96■□□□□ 0.63
CUX1-213ENST00000549414 RUFY3Q7L099 469 aa18.96■□□□□ 0.63
CUX1-213ENST00000549414 IQCA1Q86XH1 822 aa18.96■□□□□ 0.63
CUX1-213ENST00000549414 CDC5LQ99459 802 aaKnown RBP18.96■□□□□ 0.63
CUX1-213ENST00000549414 ANO10Q9NW15 660 aa18.96■□□□□ 0.63
CUX1-213ENST00000549414 FPGT-TNNI3KV9GXZ4 949 aa18.96■□□□□ 0.63
CUX1-213ENST00000549414 IGSF1Q8N6C5 1336 aa18.95■□□□□ 0.62
CUX1-213ENST00000549414 SOGA3Q5TF21 947 aa18.95■□□□□ 0.62
CUX1-213ENST00000549414 SPHKAPQ2M3C7 1700 aa18.95■□□□□ 0.62
CUX1-213ENST00000549414 SSH3Q8TE77 659 aa18.95■□□□□ 0.62
CUX1-213ENST00000549414 A0A1B0GUL7 405 aa18.95■□□□□ 0.62
CUX1-213ENST00000549414 CD2BP2O95400 341 aaKnown RBP18.95■□□□□ 0.62
CUX1-213ENST00000549414 PKP1Q13835 747 aa18.95■□□□□ 0.62
CUX1-213ENST00000549414 MFSD6Q6ZSS7 791 aa18.95■□□□□ 0.62
CUX1-213ENST00000549414 CCDC112Q8NEF3 446 aa18.95■□□□□ 0.62
CUX1-213ENST00000549414 MADDQ8WXG6 1647 aa18.95■□□□□ 0.62
CUX1-213ENST00000549414 PLEKHG1Q9ULL1 1385 aa18.95■□□□□ 0.62
CUX1-213ENST00000549414 PCDH11XQ9BZA7 1347 aa18.94■□□□□ 0.62
CUX1-213ENST00000549414 PCDH11YQ9BZA8 1340 aa18.94■□□□□ 0.62
CUX1-213ENST00000549414 E9PCH4 1651 aa18.94■□□□□ 0.62
CUX1-213ENST00000549414 PLBD2Q8NHP8 589 aa18.94■□□□□ 0.62
CUX1-213ENST00000549414 CTCFLQ8NI51 663 aaPredicted RBP18.94■□□□□ 0.62
CUX1-213ENST00000549414 ZHX3Q9H4I2 956 aa18.94■□□□□ 0.62
CUX1-213ENST00000549414 RXRAP19793 462 aa18.94■□□□□ 0.62
CUX1-213ENST00000549414 SSBP05455 408 aaKnown RBP eCLIP18.94■□□□□ 0.62
CUX1-213ENST00000549414 SSRP1Q08945 709 aaKnown RBP18.94■□□□□ 0.62
CUX1-213ENST00000549414 UNC5CLQ8IV45 518 aa18.94■□□□□ 0.62
CUX1-213ENST00000549414 INTS4Q96HW7 963 aaKnown RBP18.94■□□□□ 0.62
CUX1-213ENST00000549414 CCDC196A0A1B0GTZ2 297 aa18.94■□□□□ 0.62
CUX1-213ENST00000549414 DHX8Q14562 1220 aaKnown RBP18.94■□□□□ 0.62
CUX1-213ENST00000549414 ZNF771Q7L3S4 317 aaPredicted RBP18.93■□□□□ 0.62
CUX1-213ENST00000549414 CLIP2Q9UDT6 1046 aa18.93■□□□□ 0.62
CUX1-213ENST00000549414 C6orf229H3BNL8 230 aa18.93■□□□□ 0.62
CUX1-213ENST00000549414 PRC1O43663 620 aa18.93■□□□□ 0.62
CUX1-213ENST00000549414 DNAJC10Q8IXB1 793 aa18.93■□□□□ 0.62
CUX1-213ENST00000549414 AK7Q96M32 723 aa18.93■□□□□ 0.62
CUX1-213ENST00000549414 RNF113AO15541 343 aaKnown RBP18.93■□□□□ 0.62
CUX1-213ENST00000549414 ZFYP08048 801 aaPredicted RBP18.93■□□□□ 0.62
CUX1-213ENST00000549414 BEND3Q5T5X7 828 aa18.93■□□□□ 0.62
CUX1-213ENST00000549414 CCDC152Q4G0S7 254 aa18.92■□□□□ 0.62
CUX1-213ENST00000549414 EAF2Q96CJ1 260 aaPredicted RBP18.92■□□□□ 0.62
CUX1-213ENST00000549414 RAD50Q92878 1312 aa18.92■□□□□ 0.62
CUX1-213ENST00000549414 EYA2O00167 538 aa18.92■□□□□ 0.62
CUX1-213ENST00000549414 CYP7A1P22680 504 aa18.92■□□□□ 0.62
CUX1-213ENST00000549414 PPFIBP1Q86W92 1011 aa18.92■□□□□ 0.62
CUX1-213ENST00000549414 MIGA1Q8NAN2 632 aa18.92■□□□□ 0.62
CUX1-213ENST00000549414 CEP89Q96ST8 783 aa18.92■□□□□ 0.62
CUX1-213ENST00000549414 RNF41Q9H4P4 317 aaPredicted RBP18.92■□□□□ 0.62
CUX1-213ENST00000549414 UQCRFS1P1P0C7P4 283 aa18.92■□□□□ 0.62
CUX1-213ENST00000549414 SLC27A2O14975 620 aa18.91■□□□□ 0.62
CUX1-213ENST00000549414 NBPF5PQ86XG9 351 aaPredicted RBP18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms