RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 TBC1D10BQ4KMP7 808 aaPredicted RBP18.86■□□□□ 0.61
PTCH1-217ENST00000548420 USP16Q9Y5T5 823 aa18.86■□□□□ 0.61
PTCH1-217ENST00000548420 RIC1Q4ADV7 1423 aa18.85■□□□□ 0.61
PTCH1-217ENST00000548420 KCNQ3O43525 872 aa18.85■□□□□ 0.61
PTCH1-217ENST00000548420 NPM2Q86SE8 214 aaKnown RBP18.85■□□□□ 0.61
PTCH1-217ENST00000548420 VPS33BQ9H267 617 aa18.85■□□□□ 0.61
PTCH1-217ENST00000548420 ASTN2O75129 1339 aaPredicted RBP18.84■□□□□ 0.61
PTCH1-217ENST00000548420 PRAMEF22A3QJZ6 481 aa18.84■□□□□ 0.61
PTCH1-217ENST00000548420 TM4SF4P48230 202 aa18.84■□□□□ 0.61
PTCH1-217ENST00000548420 C3orf67Q6ZVT6 689 aa18.84■□□□□ 0.61
PTCH1-217ENST00000548420 RTFDC1Q9BY42 306 aaPredicted RBP18.84■□□□□ 0.61
PTCH1-217ENST00000548420 ZNF652Q9Y2D9 606 aa18.84■□□□□ 0.61
PTCH1-217ENST00000548420 TNIP1Q15025 636 aa18.83■□□□□ 0.6
PTCH1-217ENST00000548420 MOB2Q70IA6 237 aa18.83■□□□□ 0.6
PTCH1-217ENST00000548420 MORC1Q86VD1 984 aa18.83■□□□□ 0.6
PTCH1-217ENST00000548420 CDCA5Q96FF9 252 aa18.83■□□□□ 0.6
PTCH1-217ENST00000548420 CRAMP1Q96RY5 1269 aa18.83■□□□□ 0.6
PTCH1-217ENST00000548420 GTF2E1P29083 439 aaPredicted RBP18.82■□□□□ 0.6
PTCH1-217ENST00000548420 OTOP1Q7RTM1 612 aa18.82■□□□□ 0.6
PTCH1-217ENST00000548420 RPGRQ92834 1020 aaKnown RBP18.82■□□□□ 0.6
PTCH1-217ENST00000548420 DCPSQ96C86 337 aaKnown RBP18.82■□□□□ 0.6
PTCH1-217ENST00000548420 SIPA1L3O60292 1781 aaPredicted RBP18.82■□□□□ 0.6
PTCH1-217ENST00000548420 KIAA2012Q0VF49 1180 aa18.81■□□□□ 0.6
PTCH1-217ENST00000548420 RBM26Q5T8P6 1007 aaKnown RBP18.81■□□□□ 0.6
PTCH1-217ENST00000548420 TRIM17Q9Y577 477 aa18.81■□□□□ 0.6
PTCH1-217ENST00000548420 NBPF26B4DH59 902 aa18.8■□□□□ 0.6
PTCH1-217ENST00000548420 NBPF10Q6P3W6 841 aaKnown RBP18.8■□□□□ 0.6
PTCH1-217ENST00000548420 IL17REQ8NFR9 667 aa18.8■□□□□ 0.6
PTCH1-217ENST00000548420 FMNL2Q96PY5 1086 aa18.8■□□□□ 0.6
PTCH1-217ENST00000548420 CFHR5Q9BXR6 569 aa18.8■□□□□ 0.6
PTCH1-217ENST00000548420 COL25A1Q9BXS0 654 aaPredicted RBP18.8■□□□□ 0.6
PTCH1-217ENST00000548420 ATP6V0A2Q9Y487 856 aa18.8■□□□□ 0.6
PTCH1-217ENST00000548420 DPF2Q92785 391 aa18.79■□□□□ 0.6
PTCH1-217ENST00000548420 ARMC5Q96C12 935 aa18.79■□□□□ 0.6
PTCH1-217ENST00000548420 PRO3102Q9H379 93 aa18.79■□□□□ 0.6
PTCH1-217ENST00000548420 UNC80Q8N2C7 3258 aa18.79■□□□□ 0.6
PTCH1-217ENST00000548420 HMOX1P09601 288 aa18.78■□□□□ 0.6
PTCH1-217ENST00000548420 RBM17Q96I25 401 aaKnown RBP18.78■□□□□ 0.6
PTCH1-217ENST00000548420 PSMD14O00487 310 aa18.77■□□□□ 0.6
PTCH1-217ENST00000548420 SOX1O00570 391 aaPredicted RBP18.77■□□□□ 0.6
PTCH1-217ENST00000548420 RGL2O15211 777 aa18.77■□□□□ 0.6
PTCH1-217ENST00000548420 GGA3Q9NZ52 723 aa18.77■□□□□ 0.6
PTCH1-217ENST00000548420 PTPN22Q9Y2R2 807 aa18.77■□□□□ 0.6
PTCH1-217ENST00000548420 UBE2Q2LH0YL09 131 aa18.76■□□□□ 0.59
PTCH1-217ENST00000548420 CAP1Q01518 475 aa18.76■□□□□ 0.59
PTCH1-217ENST00000548420 MKRN3Q13064 507 aaKnown RBP18.76■□□□□ 0.59
PTCH1-217ENST00000548420 SUPT20HQ8NEM7 779 aa18.76■□□□□ 0.59
PTCH1-217ENST00000548420 LAMA3Q16787 3333 aa18.76■□□□□ 0.59
PTCH1-217ENST00000548420 SULF1Q8IWU6 871 aa18.75■□□□□ 0.59
PTCH1-217ENST00000548420 KCNQ5Q9NR82 932 aa18.74■□□□□ 0.59
PTCH1-217ENST00000548420 CC2D1BQ5T0F9 858 aaKnown RBP18.73■□□□□ 0.59
PTCH1-217ENST00000548420 DPP8Q6V1X1 898 aaPredicted RBP18.73■□□□□ 0.59
PTCH1-217ENST00000548420 LRCH3Q96II8 777 aa18.73■□□□□ 0.59
PTCH1-217ENST00000548420 NYXQ9GZU5 481 aa18.73■□□□□ 0.59
PTCH1-217ENST00000548420 DUOX1Q9NRD9 1551 aa18.72■□□□□ 0.59
PTCH1-217ENST00000548420 FKBP1BP68106 108 aa18.72■□□□□ 0.59
PTCH1-217ENST00000548420 TEFQ10587 303 aa18.72■□□□□ 0.59
PTCH1-217ENST00000548420 KIF4BQ2VIQ3 1234 aa18.72■□□□□ 0.59
PTCH1-217ENST00000548420 MPNDQ8N594 471 aa18.72■□□□□ 0.59
PTCH1-217ENST00000548420 SCAF8Q9UPN6 1271 aaKnown RBP18.72■□□□□ 0.59
PTCH1-217ENST00000548420 NUP98P52948 1817 aa18.72■□□□□ 0.59
PTCH1-217ENST00000548420 UBN2Q6ZU65 1347 aa18.72■□□□□ 0.59
PTCH1-217ENST00000548420 SUSD4Q5VX71 490 aa18.71■□□□□ 0.59
PTCH1-217ENST00000548420 ABCC4O15439 1325 aa18.71■□□□□ 0.59
PTCH1-217ENST00000548420 ZNF333Q96JL9 665 aa18.7■□□□□ 0.58
PTCH1-217ENST00000548420 RTL9Q8NET4 1388 aa18.69■□□□□ 0.58
PTCH1-217ENST00000548420 ANGEL2Q5VTE6 544 aaKnown RBP18.69■□□□□ 0.58
PTCH1-217ENST00000548420 SP8Q8IXZ3 490 aa18.69■□□□□ 0.58
PTCH1-217ENST00000548420 TMEM106CQ9BVX2 250 aa18.69■□□□□ 0.58
PTCH1-217ENST00000548420 GPTP24298 496 aa18.68■□□□□ 0.58
PTCH1-217ENST00000548420 PRAMEF18Q5VWM3 479 aa18.68■□□□□ 0.58
PTCH1-217ENST00000548420 CD99L2Q8TCZ2 262 aa18.68■□□□□ 0.58
PTCH1-217ENST00000548420 DBNDD1Q9H9R9 158 aa18.68■□□□□ 0.58
PTCH1-217ENST00000548420 WTIPA6NIX2 430 aaPredicted RBP18.67■□□□□ 0.58
PTCH1-217ENST00000548420 NTSR2O95665 410 aa18.67■□□□□ 0.58
PTCH1-217ENST00000548420 TAF1P21675 1872 aa18.67■□□□□ 0.58
PTCH1-217ENST00000548420 ZNF609O15014 1411 aa18.66■□□□□ 0.58
PTCH1-217ENST00000548420 RPS12P25398 132 aaKnown RBP18.66■□□□□ 0.58
PTCH1-217ENST00000548420 ZEB1P37275 1124 aaPredicted RBP18.66■□□□□ 0.58
PTCH1-217ENST00000548420 SREBF2Q12772 1141 aa18.66■□□□□ 0.58
PTCH1-217ENST00000548420 SCARF1Q14162 830 aa18.66■□□□□ 0.58
PTCH1-217ENST00000548420 TMX4Q9H1E5 349 aaPredicted RBP18.66■□□□□ 0.58
PTCH1-217ENST00000548420 IBTKQ9P2D0 1353 aaPredicted RBP18.66■□□□□ 0.58
PTCH1-217ENST00000548420 SCN9AQ15858 1988 aa18.65■□□□□ 0.58
PTCH1-217ENST00000548420 BTBD11A6QL63 1104 aa18.65■□□□□ 0.58
PTCH1-217ENST00000548420 CEMIPQ8WUJ3 1361 aa18.65■□□□□ 0.58
PTCH1-217ENST00000548420 VCANP13611 3396 aa18.65■□□□□ 0.58
PTCH1-217ENST00000548420 KDM3BQ7LBC6 1761 aa18.64■□□□□ 0.57
PTCH1-217ENST00000548420 GNAT3A8MTJ3 354 aa18.64■□□□□ 0.57
PTCH1-217ENST00000548420 SNRPA1P09661 255 aaKnown RBP18.64■□□□□ 0.57
PTCH1-217ENST00000548420 BBOX1O75936 387 aa18.63■□□□□ 0.57
PTCH1-217ENST00000548420 PTPN12Q05209 780 aaKnown RBP18.63■□□□□ 0.57
PTCH1-217ENST00000548420 ERVV-1B6SEH8 477 aa18.62■□□□□ 0.57
PTCH1-217ENST00000548420 MYCP01106 439 aaPredicted RBP18.62■□□□□ 0.57
PTCH1-217ENST00000548420 TTLL7Q6ZT98 887 aa18.62■□□□□ 0.57
PTCH1-217ENST00000548420 IFNL1Q8IU54 200 aa18.62■□□□□ 0.57
PTCH1-217ENST00000548420 ZNF34Q8IZ26 560 aa18.62■□□□□ 0.57
PTCH1-217ENST00000548420 NGEFQ8N5V2 710 aa18.62■□□□□ 0.57
PTCH1-217ENST00000548420 DPF3Q92784 378 aa18.62■□□□□ 0.57
PTCH1-217ENST00000548420 ERO1AQ96HE7 468 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms