RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 HHIPL1Q96JK4 782 aa16.95■□□□□ 0.3
SCAF11-208ENST00000546534 PGAP2Q9UHJ9 254 aa16.95■□□□□ 0.3
SCAF11-208ENST00000546534 ZNRF3Q9ULT6 936 aa16.95■□□□□ 0.3
SCAF11-208ENST00000546534 NUP98P52948 1817 aa16.94■□□□□ 0.3
SCAF11-208ENST00000546534 CCER1Q8TC90 406 aaPredicted RBP16.94■□□□□ 0.3
SCAF11-208ENST00000546534 VPS33BQ9H267 617 aa16.94■□□□□ 0.3
SCAF11-208ENST00000546534 ATP6V0A2Q9Y487 856 aa16.94■□□□□ 0.3
SCAF11-208ENST00000546534 LAMB4A4D0S4 1761 aa16.94■□□□□ 0.3
SCAF11-208ENST00000546534 HIRAP54198 1017 aaPredicted RBP16.93■□□□□ 0.3
SCAF11-208ENST00000546534 EIF4A1P60842 406 aaKnown RBP16.93■□□□□ 0.3
SCAF11-208ENST00000546534 DGKZQ13574 1117 aa16.93■□□□□ 0.3
SCAF11-208ENST00000546534 CIAPIN1Q6FI81 312 aa16.93■□□□□ 0.3
SCAF11-208ENST00000546534 GIGYF2Q6Y7W6 1299 aaKnown RBP16.93■□□□□ 0.3
SCAF11-208ENST00000546534 TMX4Q9H1E5 349 aaPredicted RBP16.93■□□□□ 0.3
SCAF11-208ENST00000546534 ZNF408Q9H9D4 720 aa16.93■□□□□ 0.3
SCAF11-208ENST00000546534 PCDH10Q9P2E7 1040 aa16.93■□□□□ 0.3
SCAF11-208ENST00000546534 PPP1R42Q7Z4L9 355 aa16.92■□□□□ 0.3
SCAF11-208ENST00000546534 PNISRQ8TF01 805 aaKnown RBP16.92■□□□□ 0.3
SCAF11-208ENST00000546534 NLRP3Q96P20 1036 aa16.92■□□□□ 0.3
SCAF11-208ENST00000546534 ZIC5Q96T25 663 aa16.92■□□□□ 0.3
SCAF11-208ENST00000546534 RTFDC1Q9BY42 306 aaPredicted RBP16.92■□□□□ 0.3
SCAF11-208ENST00000546534 PPP2R1AP30153 589 aa16.91■□□□□ 0.3
SCAF11-208ENST00000546534 SUPT20HQ8NEM7 779 aa16.91■□□□□ 0.3
SCAF11-208ENST00000546534 TRPM4Q8TD43 1214 aa16.91■□□□□ 0.3
SCAF11-208ENST00000546534 ZC3H15Q8WU90 426 aaKnown RBP16.91■□□□□ 0.3
SCAF11-208ENST00000546534 CASP8AP2Q9UKL3 1982 aa16.9■□□□□ 0.3
SCAF11-208ENST00000546534 RAD17O75943 681 aa16.9■□□□□ 0.3
SCAF11-208ENST00000546534 PARP10Q53GL7 1025 aa16.9■□□□□ 0.3
SCAF11-208ENST00000546534 SLC10A5Q5PT55 438 aa16.9■□□□□ 0.3
SCAF11-208ENST00000546534 DPP8Q6V1X1 898 aaPredicted RBP16.9■□□□□ 0.3
SCAF11-208ENST00000546534 CDC37L1Q7L3B6 337 aa16.9■□□□□ 0.3
SCAF11-208ENST00000546534 BCL2L13Q9BXK5 485 aa16.9■□□□□ 0.3
SCAF11-208ENST00000546534 ABCC4O15439 1325 aa16.9■□□□□ 0.3
SCAF11-208ENST00000546534 CDHR2Q9BYE9 1310 aa16.9■□□□□ 0.3
SCAF11-208ENST00000546534 KIAA2012Q0VF49 1180 aa16.89■□□□□ 0.29
SCAF11-208ENST00000546534 NOGQ13253 232 aa16.89■□□□□ 0.29
SCAF11-208ENST00000546534 SHTN1A0MZ66 631 aa16.88■□□□□ 0.29
SCAF11-208ENST00000546534 TNIP1Q15025 636 aa16.88■□□□□ 0.29
SCAF11-208ENST00000546534 DLK2Q6UY11 383 aa16.88■□□□□ 0.29
SCAF11-208ENST00000546534 USP48Q86UV5 1035 aa16.88■□□□□ 0.29
SCAF11-208ENST00000546534 SP8Q8IXZ3 490 aa16.88■□□□□ 0.29
SCAF11-208ENST00000546534 MPNDQ8N594 471 aa16.88■□□□□ 0.29
SCAF11-208ENST00000546534 THUMPD2Q9BTF0 503 aaKnown RBP16.88■□□□□ 0.29
SCAF11-208ENST00000546534 UTP14AQ9BVJ6 771 aaKnown RBP16.88■□□□□ 0.29
SCAF11-208ENST00000546534 CNOT7Q9UIV1 285 aaKnown RBP16.88■□□□□ 0.29
SCAF11-208ENST00000546534 KDM3BQ7LBC6 1761 aa16.87■□□□□ 0.29
SCAF11-208ENST00000546534 BBOX1O75936 387 aa16.87■□□□□ 0.29
SCAF11-208ENST00000546534 HUNKP57058 714 aa16.87■□□□□ 0.29
SCAF11-208ENST00000546534 YDJCA8MPS7 323 aa16.86■□□□□ 0.29
SCAF11-208ENST00000546534 LRP10Q7Z4F1 713 aa16.86■□□□□ 0.29
SCAF11-208ENST00000546534 ERBB4Q15303 1308 aa16.86■□□□□ 0.29
SCAF11-208ENST00000546534 H7C1D1 291 aa16.85■□□□□ 0.29
SCAF11-208ENST00000546534 HCLS1P14317 486 aaPredicted RBP16.85■□□□□ 0.29
SCAF11-208ENST00000546534 PDIA6Q15084 440 aa16.85■□□□□ 0.29
SCAF11-208ENST00000546534 MICALL2Q8IY33 904 aa16.85■□□□□ 0.29
SCAF11-208ENST00000546534 FAM155AB1AL88 458 aaPredicted RBP16.84■□□□□ 0.29
SCAF11-208ENST00000546534 NEFMP07197 916 aa16.84■□□□□ 0.29
SCAF11-208ENST00000546534 PROSER3Q2NL68 480 aa16.83■□□□□ 0.28
SCAF11-208ENST00000546534 SAMD7Q7Z3H4 446 aa16.83■□□□□ 0.28
SCAF11-208ENST00000546534 ANXA1P04083 346 aa16.82■□□□□ 0.28
SCAF11-208ENST00000546534 EIF2S2P20042 333 aaKnown RBP16.82■□□□□ 0.28
SCAF11-208ENST00000546534 GRAPQ13588 217 aa16.82■□□□□ 0.28
SCAF11-208ENST00000546534 NFE2L2Q16236 605 aa16.82■□□□□ 0.28
SCAF11-208ENST00000546534 RGMBQ6NW40 437 aa16.82■□□□□ 0.28
SCAF11-208ENST00000546534 DDX46Q7L014 1031 aaKnown RBP16.82■□□□□ 0.28
SCAF11-208ENST00000546534 KRT26Q7Z3Y9 468 aa16.82■□□□□ 0.28
SCAF11-208ENST00000546534 NLRP10Q86W26 655 aa16.82■□□□□ 0.28
SCAF11-208ENST00000546534 GRAPLQ8TC17 118 aaPredicted RBP16.82■□□□□ 0.28
SCAF11-208ENST00000546534 DPF2Q92785 391 aa16.82■□□□□ 0.28
SCAF11-208ENST00000546534 PLEKHF1Q96S99 279 aa16.82■□□□□ 0.28
SCAF11-208ENST00000546534 GBA2Q9HCG7 927 aaPredicted RBP16.82■□□□□ 0.28
SCAF11-208ENST00000546534 DLG5Q8TDM6 1919 aa16.81■□□□□ 0.28
SCAF11-208ENST00000546534 PSMD14O00487 310 aa16.81■□□□□ 0.28
SCAF11-208ENST00000546534 EGFRP00533 1210 aa16.81■□□□□ 0.28
SCAF11-208ENST00000546534 SOX10P56693 466 aa16.81■□□□□ 0.28
SCAF11-208ENST00000546534 KIF23Q02241 960 aaPredicted RBP16.81■□□□□ 0.28
SCAF11-208ENST00000546534 TBC1D10BQ4KMP7 808 aaPredicted RBP16.81■□□□□ 0.28
SCAF11-208ENST00000546534 SAGE1Q9NXZ1 904 aa16.81■□□□□ 0.28
SCAF11-208ENST00000546534 DUOX1Q9NRD9 1551 aa16.81■□□□□ 0.28
SCAF11-208ENST00000546534 TRPA1O75762 1119 aa16.8■□□□□ 0.28
SCAF11-208ENST00000546534 C2orf69Q8N8R5 385 aa16.8■□□□□ 0.28
SCAF11-208ENST00000546534 CCDC102AQ96A19 550 aa16.8■□□□□ 0.28
SCAF11-208ENST00000546534 RNF186Q9NXI6 227 aa16.8■□□□□ 0.28
SCAF11-208ENST00000546534 TRMT112Q9UI30 125 aaKnown RBP16.8■□□□□ 0.28
SCAF11-208ENST00000546534 ADM5C9JUS6 153 aa16.79■□□□□ 0.28
SCAF11-208ENST00000546534 ZNF157P51786 506 aaPredicted RBP16.79■□□□□ 0.28
SCAF11-208ENST00000546534 DBNDD1Q9H9R9 158 aa16.79■□□□□ 0.28
SCAF11-208ENST00000546534 TSPYL4Q9UJ04 414 aa16.79■□□□□ 0.28
SCAF11-208ENST00000546534 LAMB2P55268 1798 aa16.79■□□□□ 0.28
SCAF11-208ENST00000546534 PDE4DIPQ5VU43 2346 aa16.79■□□□□ 0.28
SCAF11-208ENST00000546534 SH3TC1Q8TE82 1336 aa16.78■□□□□ 0.28
SCAF11-208ENST00000546534 AIMP1Q12904 312 aaKnown RBP16.78■□□□□ 0.28
SCAF11-208ENST00000546534 WASHC4Q2M389 1173 aa16.78■□□□□ 0.28
SCAF11-208ENST00000546534 HSP90AB3PQ58FF7 597 aa16.78■□□□□ 0.28
SCAF11-208ENST00000546534 RBM26Q5T8P6 1007 aaKnown RBP16.78■□□□□ 0.28
SCAF11-208ENST00000546534 CHRDL2Q6WN34 429 aa16.78■□□□□ 0.28
SCAF11-208ENST00000546534 COPS6Q7L5N1 327 aa16.78■□□□□ 0.28
SCAF11-208ENST00000546534 TMC4Q7Z404 712 aa16.78■□□□□ 0.28
SCAF11-208ENST00000546534 DCPSQ96C86 337 aaKnown RBP16.78■□□□□ 0.28
SCAF11-208ENST00000546534 KCNQ5Q9NR82 932 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms